Rorug07G0308200

Chaperone protein DNAj

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0001890
Physical Location & Seq
Reverse (-)
30966347 .. 30966565
219 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0308200.1

Sequence Viewer

Length: 219 bp
ATGGGAAGCAGCAGCAAGCCGTTGGGACCCACAGGGGAGTTCTTCAGGAGAAGGGACGAGTGGAGGAAGCACCCGATGCTTTCGAATCAGCTCCGCCACGCCACTCCCGGCCTCGGCATCGCTCTCGTCGCCTTCGGTGTCTACTTGGTCGGCGAGCAGTTCTACAACCGCGTCATCTCTCCTCCTTCTTCTCACTCCTCCTCCTCCTCTTCTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

72

Amino Acids

7.94

Weight (kDa)

10.4

Isoelectric Point (pI)

57.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NDUF_B12 PF08122 17 - 55 3.2e-08 NADH-ubiquinone oxidoreductase B12 subunit family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 141
AccII CGCG 1 cut(s) 171
AciI CCGC 2 cut(s) 94, 169
AcuI CTGAAG 1 cut(s) 28
AfiI CCNNNNNNNGG 1 cut(s) 113
AluBI AGCT 1 cut(s) 91
AluI AGCT 1 cut(s) 91
AoxI GGCC 1 cut(s) 109
ApeKI GCWGC 2 cut(s) 9, 12
AspS9I GGNCC 1 cut(s) 26
AsuC2I CCSGG 1 cut(s) 108
AsuII TTCGAA 1 cut(s) 83
AvaII GGWCC 1 cut(s) 26
BbvI GCAGC 2 cut(s) 21, 24
BceAI ACGGC 1 cut(s) 4
BcgI CGANNNNNNTGC 2 cut(s) 106, 140
BcnI CCSGG 1 cut(s) 108
BisI GCNGC 2 cut(s) 10, 13
BlsI GCNGC 2 cut(s) 11, 14
Bme1390I CCNGG 1 cut(s) 108
Bme18I GGWCC 1 cut(s) 26
BmgT120I GGNCC 1 cut(s) 26
BmiI GGNNCC 2 cut(s) 27, 28
BmrFI CCNGG 1 cut(s) 108
BmsI GCATC 2 cut(s) 66, 126
Bpu14I TTCGAA 1 cut(s) 83
BpuMI CCSGG 1 cut(s) 108
BsaJI CCNNGG 1 cut(s) 112
BsaXI ACNNNNNCTCC 2 cut(s) 185, 215
Bsc4I CCNNNNNNNGG 1 cut(s) 113
BseDI CCNNGG 1 cut(s) 112
BseLI CCNNNNNNNGG 1 cut(s) 113
BseRI GAGGAG 5 cut(s) 171, 187, 190, 193, 196
BseXI GCAGC 2 cut(s) 21, 24
Bsh1236I CGCG 1 cut(s) 171
BshFI GGCC 1 cut(s) 111
BsiSI CCGG 1 cut(s) 108
BslFI GGGAC 2 cut(s) 39, 68
BslI CCNNNNNNNGG 1 cut(s) 113
BsmFI GGGAC 2 cut(s) 39, 68
BsnI GGCC 1 cut(s) 111
Bsp119I TTCGAA 1 cut(s) 83
BspACI CCGC 2 cut(s) 94, 169
BspANI GGCC 1 cut(s) 111
BspFNI CGCG 1 cut(s) 171
BspLI GGNNCC 2 cut(s) 27, 28
BspT104I TTCGAA 1 cut(s) 83
BssECI CCNNGG 1 cut(s) 112
Bst6I CTCTTC 1 cut(s) 214
BstAPI GCANNNNNTGC 1 cut(s) 76
BstBI TTCGAA 1 cut(s) 83
BstC8I GCNNGC 2 cut(s) 17, 155
BstFNI CGCG 1 cut(s) 171
BstMWI GCNNNNNNNGC 2 cut(s) 76, 128
BstSCI CCNGG 1 cut(s) 106
BstUI CGCG 1 cut(s) 171
BstV1I GCAGC 2 cut(s) 21, 24
BsuRI GGCC 1 cut(s) 111
BtgZI GCGATG 1 cut(s) 103
BtsIMutI CAGTG 1 cut(s) 214
Cac8I GCNNGC 2 cut(s) 17, 155
Cfr13I GGNCC 1 cut(s) 26
CseI GACGC 1 cut(s) 160
CviJI RGCY 3 cut(s) 19, 91, 111
CviKI_1 RGCY 3 cut(s) 19, 91, 111
Eam1104I CTCTTC 1 cut(s) 214
EarI CTCTTC 1 cut(s) 214
EciI GGCGGA 1 cut(s) 83
Eco47I GGWCC 1 cut(s) 26
Eco57I CTGAAG 1 cut(s) 28
EcoO109I RGGNCCY 1 cut(s) 26
FaqI GGGAC 2 cut(s) 39, 68
FblI GTMKAC 1 cut(s) 141
Fnu4HI GCNGC 2 cut(s) 10, 13
Fsp4HI GCNGC 2 cut(s) 10, 13
GluI GCNGC 2 cut(s) 10, 13
HaeIII GGCC 1 cut(s) 111
HapII CCGG 1 cut(s) 108
HgaI GACGC 1 cut(s) 160
HinfI GANTC 1 cut(s) 85
HpaII CCGG 1 cut(s) 108
Hpy166II GTNNAC 1 cut(s) 142
Hpy188III TCNNGA 1 cut(s) 46
Hpy8I GTNNAC 1 cut(s) 142
Hpy99I CGWCG 1 cut(s) 131
HpyAV CCTTC 3 cut(s) 45, 142, 195
HpyF10VI GCNNNNNNNGC 2 cut(s) 76, 128
KflI GGGWCCC 1 cut(s) 26
LmnI GCTCC 1 cut(s) 96
LpnPI CCDG 3 cut(s) 18, 31, 121
Lsp1109I GCAGC 2 cut(s) 21, 24
LweI GCATC 2 cut(s) 66, 126
MboII GAAGA 3 cut(s) 34, 180, 201
MnlI CCTC 7 cut(s) 57, 122, 192, 208, 211, 214, 217
MspI CCGG 1 cut(s) 108
MspR9I CCNGG 1 cut(s) 108
MvnI CGCG 1 cut(s) 171
MwoI GCNNNNNNNGC 2 cut(s) 76, 128
NciI CCSGG 1 cut(s) 108
NlaIV GGNNCC 2 cut(s) 27, 28
NmeAIII GCCGAG 1 cut(s) 93
NspV TTCGAA 1 cut(s) 83
PfeI GAWTC 1 cut(s) 85
PkrI GCNGC 2 cut(s) 11, 14
PpuMI RGGWCCY 1 cut(s) 26
Psp5II RGGWCCY 1 cut(s) 26
PspN4I GGNNCC 2 cut(s) 27, 28
PspPI GGNCC 1 cut(s) 26
PspPPI RGGWCCY 1 cut(s) 26
SatI GCNGC 2 cut(s) 10, 13
Sau96I GGNCC 1 cut(s) 26
ScrFI CCNGG 1 cut(s) 108
SetI ASST 1 cut(s) 93
SfaNI GCATC 2 cut(s) 66, 126
SfuI TTCGAA 1 cut(s) 83
SinI GGWCC 1 cut(s) 26
SsiI CCGC 2 cut(s) 94, 169
StyD4I CCNGG 1 cut(s) 106
TaqI TCGA 1 cut(s) 83
TfiI GAWTC 1 cut(s) 85
TseI GCWGC 2 cut(s) 9, 12
VpaK11BI GGWCC 1 cut(s) 26
XmiI GTMKAC 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.