Rw7G038380

Chaperone protein DNAj

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Forward (+)
58445861 .. 58454373
8513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G038380.1

Sequence Viewer

Length: 1413 bp
ATGCGCAAATTGAGCTTGCTAGGCCTGTGCCGGAGGCGTTTGGTTTCGTCATTGGCCGGAGAATCGCCCATTCATCAACGGAGGCTTTGCTCGGTGACCGAGGCATTGTATCGAACACAAGGTTTGAGCAGCTCTTCTGGTTCCGTAGCTGGTTTCGCTACTTCGTTTGGGAATCGTTATTTCCATGCGTCAGGGTTTTGCTGCGCACCGGAACGAGACTACTACGAAACTCTTGGCGTTTCTCGGAGCGCAAGCAAAGATGAGATTAAGAAGGCTTTTCGCACGCTGGCCAAAAAATACCATCCTGATGCAAACAGGGACAATCCTTCTTATAAGAGAAAATTTCAAGAGATAAGAGAAGCTTATGAGACATTGCAAGATCCTGAAAAGAGGGCAGAATATGACATGAAGCAATCAAGTGGGTATACTACTGGTGATGCAGAAGGTTTTAGATATAATTATCAAACACATGGTTCTACTGCTGATGCAGAGGGGTTTGGACATGGTTTTAAACCTCATTTCTCCAGTTCATTTCATAAAATATTCTCAGAGATCTTTGAACATGAATTCGATCAAGTTGCACCTGACATTCAGGTGGAGCTGTCTCTCTCTTTTTCTGAAGCTACTAGAGGATGCACAAAGAATCTGTCTGTCACTGCACATGTTCCCTGTGATTCTTGTGATGGGCGTGGCTATCCACTAAAGGCCAAGACAAAATTGTGTCCTATTTGCAGAGGTATTGGGAGAGTTACAATTCCTCCGTTCACATCAACATGCAGTACTTGTAAAGGGTCAGGCCAAATAATCAAGGAACATTGTATGTCATGTGGAGGATTAGGGATAGTTGAAGGTGCAAGAGAGGTTGAAGTTACCATCCCAGCAGGTGTGGATTCTGGAGATACAATCCGCGTACCGGAGGCTGGGAATAGTGGGCCACGGGGAAGTCAGCCAGGTTGGTTATACATTAAGCTAAAGGTTGCTGAAGATCCTGTTTTTGCTAGAGATGGTGCAGATGTTTATGTGGACTCTAATATCAGCTTTACTCAAGCTATTCTTGGTGGTAAGGTTGAGGTGCCAACTTTAACCGGGAAGACAGAAGTAAAAATACCAAAGGGGGTTCAGCCTGGAGAACACGTGGTACTAAGAGGCAAAGGACTACCGAAGCATGGTTTCCTAGTTCACCATGGAGACCAATATGTTCGCTTTCGAGTCCAGTTTCCGACTAAAATAAATGAACGTCAACATGCGATATTAGAAGAATTTGCGAAGGAGGAGATAATTCATGGAAACAGCAACTCCAACGATAAAGACTGGTTTCAGCGGATAATTGAACGTGTTATGGGTCAGAGATTTGTGCTTGACTTCTCGATATTCTTATTGATCCTTTTTTTGCTGAGCAAAACCACGGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

470

Amino Acids

52.09

Weight (kDa)

8.66

Isoelectric Point (pI)

34.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 73 - 135 2e-26 DnaJ domain
DnaJ_C PF01556 197 - 407 2.5e-45 DnaJ C terminal domain
DnaJ_CXXCXGXG PF00684 224 - 278 4.1e-08 DnaJ central domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 333
AarI CACCTGC 1 cut(s) 872
Acc16I TGCGCA 2 cut(s) 5, 205
Acc36I ACCTGC 1 cut(s) 872
AccB1I GGYRCC 1 cut(s) 1072
AccI GTMKAC 1 cut(s) 425
AccII CGCG 1 cut(s) 909
AciI CCGC 2 cut(s) 907, 1321
AclWI GGATC 3 cut(s) 374, 980, 1375
AcoI YGGCCR 2 cut(s) 54, 288
AcsI RAATTY 3 cut(s) 341, 566, 1259
AcuI CTGAAG 2 cut(s) 639, 1002
AcvI CACGTG 1 cut(s) 1135
AfaI GTAC 3 cut(s) 781, 912, 1140
AfiI CCNNNNNNNGG 3 cut(s) 913, 920, 1166
AflIII ACRYGT 3 cut(s) 661, 1132, 1333
AgsI TTSAA 5 cut(s) 347, 560, 848, 866, 1331
AjnI CCWGG 2 cut(s) 949, 1123
AluBI AGCT 9 cut(s) 15, 132, 149, 362, 601, 623, 970, 1038, 1049
AluI AGCT 9 cut(s) 15, 132, 149, 362, 601, 623, 970, 1038, 1049
Alw26I GTCTC 4 cut(s) 210, 362, 609, 1182
AlwI GGATC 3 cut(s) 374, 980, 1375
AoxI GGCC 6 cut(s) 22, 54, 288, 705, 796, 932
ApeKI GCWGC 2 cut(s) 129, 201
ApoI RAATTY 3 cut(s) 341, 566, 1259
ArsI GACNNNNNNTTYG 2 cut(s) 632, 664
AspLEI GCGC 3 cut(s) 6, 206, 251
AspS9I GGNCC 1 cut(s) 932
AsuC2I CCSGG 1 cut(s) 1087
AsuHPI GGTGA 3 cut(s) 106, 446, 1172
BalI TGGCCA 1 cut(s) 290
BanI GGYRCC 1 cut(s) 1072
BarI GAAGNNNNNNTAC 2 cut(s) 1089, 1121
BbrPI CACGTG 1 cut(s) 1135
BbsI GAAGAC 1 cut(s) 1097
BbvI GCAGC 2 cut(s) 141, 188
BccI CCATC 4 cut(s) 309, 677, 881, 998
BcgI CGANNNNNNTGC 2 cut(s) 560, 594
BciT130I CCWGG 2 cut(s) 951, 1125
BcnI CCSGG 1 cut(s) 1087
BcoDI GTCTC 4 cut(s) 210, 362, 609, 1182
BfaI CTAG 4 cut(s) 20, 627, 999, 1175
BfuAI ACCTGC 1 cut(s) 872
BglII AGATCT 1 cut(s) 552
BisI GCNGC 2 cut(s) 130, 202
BlpI GCTNAGC 1 cut(s) 1394
BlsI GCNGC 2 cut(s) 131, 203
BmcAI AGTACT 1 cut(s) 781
Bme1390I CCNGG 3 cut(s) 951, 1087, 1125
BmgT120I GGNCC 1 cut(s) 932
BmiI GGNNCC 2 cut(s) 142, 1074
BmrFI CCNGG 3 cut(s) 951, 1087, 1125
BmsI GCATC 4 cut(s) 298, 427, 475, 623
BpiI GAAGAC 1 cut(s) 1097
BpmI CTGGAG 3 cut(s) 508, 915, 1146
Bpu1102I GCTNAGC 1 cut(s) 1394
BpuEI CTTGAG 1 cut(s) 1029
BpuMI CCSGG 1 cut(s) 1087
BsaAI YACGTR 1 cut(s) 1135
BsaI GGTCTC 1 cut(s) 1182
BsaJI CCNNGG 4 cut(s) 99, 935, 1183, 1404
BsaWI WCCGGW 2 cut(s) 208, 913
BsaXI ACNNNNNCTCC 6 cut(s) 742, 772, 1119, 1149, 1280, 1310
Bsc4I CCNNNNNNNGG 3 cut(s) 913, 920, 1166
Bse1I ACTGG 4 cut(s) 436, 525, 1213, 1316
Bse3DI GCAATG 1 cut(s) 371
BseBI CCWGG 2 cut(s) 951, 1125
BseDI CCNNGG 4 cut(s) 99, 935, 1183, 1404
BseGI GGATG 3 cut(s) 301, 638, 873
BseLI CCNNNNNNNGG 3 cut(s) 913, 920, 1166
BseMI GCAATG 1 cut(s) 371
BseMII CTCAG 2 cut(s) 561, 1385
BseNI ACTGG 4 cut(s) 436, 525, 1213, 1316
BseRI GAGGAG 1 cut(s) 1286
BseXI GCAGC 2 cut(s) 141, 188
BseYI CCCAGC 2 cut(s) 877, 920
BsgI GTGCAG 2 cut(s) 642, 1029
Bsh1236I CGCG 1 cut(s) 909
BshFI GGCC 6 cut(s) 24, 56, 290, 707, 798, 934
BshNI GGYRCC 1 cut(s) 1072
BsiSI CCGG 5 cut(s) 31, 57, 209, 914, 1086
BslFI GGGAC 1 cut(s) 332
BslI CCNNNNNNNGG 3 cut(s) 913, 920, 1166
BsmAI GTCTC 4 cut(s) 210, 362, 609, 1182
BsmFI GGGAC 1 cut(s) 332
BsnI GGCC 6 cut(s) 24, 56, 290, 707, 798, 934
Bso31I GGTCTC 1 cut(s) 1182
Bsp143I GATC 5 cut(s) 379, 552, 571, 985, 1380
Bsp1720I GCTNAGC 1 cut(s) 1394
Bsp19I CCATGG 1 cut(s) 1183
BspACI CCGC 2 cut(s) 907, 1321
BspANI GGCC 6 cut(s) 24, 56, 290, 707, 798, 934
BspCNI CTCAG 2 cut(s) 560, 1386
BspFNI CGCG 1 cut(s) 909
BspLI GGNNCC 2 cut(s) 142, 1074
BspMI ACCTGC 1 cut(s) 872
BspPI GGATC 3 cut(s) 374, 980, 1375
BspQI GCTCTTC 1 cut(s) 139
BspT107I GGYRCC 1 cut(s) 1072
BspTNI GGTCTC 1 cut(s) 1182
BsrDI GCAATG 1 cut(s) 371
BsrI ACTGG 4 cut(s) 436, 525, 1213, 1316
BssECI CCNNGG 4 cut(s) 99, 935, 1183, 1404
BssMI GATC 5 cut(s) 379, 552, 571, 985, 1380
BssNAI GTATAC 1 cut(s) 426
BssT1I CCWWGG 1 cut(s) 1183
Bst1107I GTATAC 1 cut(s) 426
Bst2UI CCWGG 2 cut(s) 951, 1125
Bst6I CTCTTC 1 cut(s) 139
BstBAI YACGTR 1 cut(s) 1135
BstC8I GCNNGC 4 cut(s) 17, 253, 284, 288
BstDEI CTNAG 3 cut(s) 547, 1142, 1394
BstDSI CCRYGG 3 cut(s) 935, 1183, 1404
BstEII GGTNACC 1 cut(s) 94
BstF5I GGATG 3 cut(s) 301, 638, 873
BstFNI CGCG 1 cut(s) 909
BstHHI GCGC 3 cut(s) 6, 206, 251
BstKTI GATC 5 cut(s) 382, 555, 574, 988, 1383
BstMAI GTCTC 4 cut(s) 210, 362, 609, 1182
BstMBI GATC 5 cut(s) 379, 552, 571, 985, 1380
BstMWI GCNNNNNNNGC 3 cut(s) 12, 21, 155
BstNI CCWGG 2 cut(s) 951, 1125
BstNSI RCATGY 3 cut(s) 665, 777, 1247
BstPI GGTNACC 1 cut(s) 94
BstSCI CCNGG 3 cut(s) 949, 1085, 1123
BstUI CGCG 1 cut(s) 909
BstV1I GCAGC 2 cut(s) 141, 188
BstV2I GAAGAC 1 cut(s) 1097
BstX2I RGATCY 3 cut(s) 379, 552, 985
BstYI RGATCY 3 cut(s) 379, 552, 985
BstZ17I GTATAC 1 cut(s) 426
BsuRI GGCC 6 cut(s) 24, 56, 290, 707, 798, 934
BtgI CCRYGG 3 cut(s) 935, 1183, 1404
BtsCI GGATG 3 cut(s) 301, 638, 873
BtsI GCAGTG 1 cut(s) 654
BtsIMutI CAGTG 1 cut(s) 654
BveI ACCTGC 1 cut(s) 872
Cac8I GCNNGC 4 cut(s) 17, 253, 284, 288
CfoI GCGC 3 cut(s) 6, 206, 251
Cfr13I GGNCC 1 cut(s) 932
CseI GACGC 1 cut(s) 177
Csp6I GTAC 3 cut(s) 780, 911, 1139
CviQI GTAC 3 cut(s) 780, 911, 1139
DdeI CTNAG 3 cut(s) 547, 1142, 1394
DpnI GATC 5 cut(s) 381, 554, 573, 987, 1382
DpnII GATC 5 cut(s) 379, 552, 571, 985, 1380
DraI TTTAAA 1 cut(s) 511
EaeI YGGCCR 2 cut(s) 54, 288
Eam1104I CTCTTC 1 cut(s) 139
EarI CTCTTC 1 cut(s) 139
Eco130I CCWWGG 1 cut(s) 1183
Eco147I AGGCCT 1 cut(s) 24
Eco31I GGTCTC 1 cut(s) 1182
Eco57I CTGAAG 2 cut(s) 639, 1002
Eco72I CACGTG 1 cut(s) 1135
Eco91I GGTNACC 1 cut(s) 94
EcoO65I GGTNACC 1 cut(s) 94
EcoRI GAATTC 1 cut(s) 566
EcoRII CCWGG 2 cut(s) 949, 1123
EcoT14I CCWWGG 1 cut(s) 1183
ErhI CCWWGG 1 cut(s) 1183
FalI AAGNNNNNCTT 4 cut(s) 346, 378, 1038, 1070
FaqI GGGAC 1 cut(s) 332
FblI GTMKAC 1 cut(s) 425
Fnu4HI GCNGC 2 cut(s) 130, 202
FokI GGATG 3 cut(s) 288, 645, 860
Fsp4HI GCNGC 2 cut(s) 130, 202
FspBI CTAG 4 cut(s) 20, 627, 999, 1175
FspI TGCGCA 2 cut(s) 5, 205
GlaI GCGC 3 cut(s) 5, 205, 250
GluI GCNGC 2 cut(s) 130, 202
GsaI CCCAGC 2 cut(s) 881, 924
GsuI CTGGAG 3 cut(s) 508, 915, 1146
HaeIII GGCC 6 cut(s) 24, 56, 290, 707, 798, 934
HapII CCGG 5 cut(s) 31, 57, 209, 914, 1086
HgaI GACGC 1 cut(s) 177
HhaI GCGC 3 cut(s) 6, 206, 251
Hin6I GCGC 3 cut(s) 4, 204, 249
HinP1I GCGC 3 cut(s) 4, 204, 249
HincII GTYRAC 1 cut(s) 1241
HindII GTYRAC 1 cut(s) 1241
HindIII AAGCTT 1 cut(s) 360
HinfI GANTC 7 cut(s) 62, 172, 643, 674, 890, 1025, 1209
HpaII CCGG 5 cut(s) 31, 57, 209, 914, 1086
HphI GGTGA 3 cut(s) 106, 446, 1172
Hpy166II GTNNAC 5 cut(s) 426, 765, 1024, 1180, 1241
Hpy188I TCNGA 5 cut(s) 246, 550, 619, 1221, 1347
Hpy188III TCNNGA 5 cut(s) 305, 347, 383, 894, 1366
Hpy8I GTNNAC 5 cut(s) 426, 765, 1024, 1180, 1241
HpyAV CCTTC 5 cut(s) 265, 336, 437, 842, 1261
HpyCH4IV ACGT 3 cut(s) 1134, 1237, 1333
HpyF10VI GCNNNNNNNGC 3 cut(s) 12, 21, 155
HpyF3I CTNAG 3 cut(s) 547, 1142, 1394
HpySE526I ACGT 3 cut(s) 1134, 1237, 1333
HspAI GCGC 3 cut(s) 4, 204, 249
Kzo9I GATC 5 cut(s) 379, 552, 571, 985, 1380
LguI GCTCTTC 1 cut(s) 139
LmnI GCTCC 2 cut(s) 246, 598
Lsp1109I GCAGC 2 cut(s) 141, 188
LweI GCATC 4 cut(s) 298, 427, 475, 623
MaeI CTAG 4 cut(s) 20, 627, 999, 1175
MaeII ACGT 3 cut(s) 1134, 1237, 1333
MaeIII GTNAC 4 cut(s) 94, 652, 748, 868
MalI GATC 5 cut(s) 381, 554, 573, 987, 1382
MboI GATC 5 cut(s) 379, 552, 571, 985, 1380
MboII GAAGA 4 cut(s) 126, 995, 1102, 1268
MflI RGATCY 3 cut(s) 379, 552, 985
MlsI TGGCCA 1 cut(s) 290
MluCI AATT 9 cut(s) 8, 341, 457, 566, 716, 753, 1259, 1278, 1326
MluNI TGGCCA 1 cut(s) 290
MlyI GAGTC 2 cut(s) 1019, 1218
MmeI TCCRAC 2 cut(s) 1244, 1323
Mox20I TGGCCA 1 cut(s) 290
MscI TGGCCA 1 cut(s) 290
MseI TTAA 4 cut(s) 267, 510, 966, 1082
MslI CAYNNNNRTG 3 cut(s) 306, 593, 772
Msp20I TGGCCA 1 cut(s) 290
MspA1I CMGCKG 1 cut(s) 1321
MspI CCGG 5 cut(s) 31, 57, 209, 914, 1086
MspR9I CCNGG 3 cut(s) 951, 1087, 1125
MvaI CCWGG 2 cut(s) 951, 1125
MvnI CGCG 1 cut(s) 909
MwoI GCNNNNNNNGC 3 cut(s) 12, 21, 155
NciI CCSGG 1 cut(s) 1087
NcoI CCATGG 1 cut(s) 1183
NdeII GATC 5 cut(s) 379, 552, 571, 985, 1380
NlaIV GGNNCC 2 cut(s) 142, 1074
NmuCI GTSAC 2 cut(s) 94, 652
NsbI TGCGCA 2 cut(s) 5, 205
NspI RCATGY 3 cut(s) 665, 777, 1247
PaqCI CACCTGC 1 cut(s) 872
PceI AGGCCT 1 cut(s) 24
PciI ACATGT 1 cut(s) 661
PciSI GCTCTTC 1 cut(s) 139
PfeI GAWTC 5 cut(s) 62, 172, 643, 674, 890
PkrI GCNGC 2 cut(s) 131, 203
PleI GAGTC 2 cut(s) 1019, 1217
PmaCI CACGTG 1 cut(s) 1135
PmlI CACGTG 1 cut(s) 1135
PpsI GAGTC 2 cut(s) 1019, 1217
Ppu21I YACGTR 1 cut(s) 1135
PscI ACATGT 1 cut(s) 661
PsiI TTATAA 1 cut(s) 333
Psp6I CCWGG 2 cut(s) 949, 1123
PspCI CACGTG 1 cut(s) 1135
PspEI GGTNACC 1 cut(s) 94
PspFI CCCAGC 2 cut(s) 877, 920
PspGI CCWGG 2 cut(s) 949, 1123
PspN4I GGNNCC 2 cut(s) 142, 1074
PspPI GGNCC 1 cut(s) 932
PsrI GAACNNNNNNTAC 2 cut(s) 1122, 1154
PsuI RGATCY 3 cut(s) 379, 552, 985
RsaI GTAC 3 cut(s) 781, 912, 1140
RsaNI GTAC 3 cut(s) 780, 911, 1139
RseI CAYNNNNRTG 3 cut(s) 306, 593, 772
SapI GCTCTTC 1 cut(s) 139
SaqAI TTAA 4 cut(s) 267, 510, 966, 1082
SatI GCNGC 2 cut(s) 130, 202
Sau3AI GATC 5 cut(s) 379, 552, 571, 985, 1380
Sau96I GGNCC 1 cut(s) 932
ScaI AGTACT 1 cut(s) 781
SchI GAGTC 2 cut(s) 1019, 1218
ScrFI CCNGG 3 cut(s) 951, 1087, 1125
SfaNI GCATC 4 cut(s) 298, 427, 475, 623
SmiMI CAYNNNNRTG 3 cut(s) 306, 593, 772
SmlI CTYRAG 1 cut(s) 1044
SmoI CTYRAG 1 cut(s) 1044
Sse9I AATT 9 cut(s) 8, 341, 457, 566, 716, 753, 1259, 1278, 1326
SseBI AGGCCT 1 cut(s) 24
SsiI CCGC 2 cut(s) 907, 1321
SspI AATATT 1 cut(s) 543
SspMI CTAG 4 cut(s) 20, 627, 999, 1175
StuI AGGCCT 1 cut(s) 24
StyD4I CCNGG 3 cut(s) 949, 1085, 1123
StyI CCWWGG 1 cut(s) 1183
TaiI ACGT 3 cut(s) 1137, 1240, 1336
TaqI TCGA 4 cut(s) 112, 570, 1207, 1367
TaqII GACCGA 1 cut(s) 113
TasI AATT 9 cut(s) 8, 341, 457, 566, 716, 753, 1259, 1278, 1326
TatI WGTACW 1 cut(s) 779
TfiI GAWTC 5 cut(s) 62, 172, 643, 674, 890
Tru1I TTAA 4 cut(s) 267, 510, 966, 1082
Tru9I TTAA 4 cut(s) 267, 510, 966, 1082
TscAI CASTG 1 cut(s) 661
TseFI GTSAC 2 cut(s) 94, 652
TseI GCWGC 2 cut(s) 129, 201
Tsp45I GTSAC 2 cut(s) 94, 652
TspDTI ATGAA 7 cut(s) 62, 422, 519, 524, 579, 1248, 1271
TspGWI ACGGA 3 cut(s) 94, 133, 750
TspRI CASTG 1 cut(s) 661
XapI RAATTY 3 cut(s) 341, 566, 1259
XceI RCATGY 3 cut(s) 665, 777, 1247
XmiI GTMKAC 1 cut(s) 425
XspI CTAG 4 cut(s) 20, 627, 999, 1175
ZrmI AGTACT 1 cut(s) 781
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.