Rh7BG434000

Chaperone protein DNAj

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0001890
Physical Location & Seq
Forward (+)
49769091 .. 49774416
5326 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG434000.1

Sequence Viewer

Length: 732 bp
ATGCGCAAATTGAGCTTGCTAGGCCTGTGCCGGAGGCGTTTGGTTTCGTCATTGGCCGGAGAATCGCCCACTGATCAACGGAGGCTTTGCTCGGTGACCGAGGCATTGTATCGAACACAAGGTTTGAGCAGCTCTTCTGGTTCCGTAGCTGGTTTCGCAACTTCATTTGGGAATCGTTATTTCCACGCCTCAGGGTTTTGCTGCGCACCGGAACGAGACTACTATGAAACTCTTGGCGTTTCTCGGAGCGCAAGCAAAGATGAGATTAAGAAGGCTTTTCGCACGCTGGCCAAAAAATACCATCCTGATGCAAACAGGGACAATCCTTCTTATAAGAGAAAATTTCAAGAGATAAGAGAAGCTTATGAGACATTGCAAGATCCTGAAAAGAGGGCAGAATATGACATGAAGCAATCAAGTGGGTATACTGCTGGTGATGCAGAAGGTTTTAGATATAATTATCAAACACATGGTTCTACTGCTGATGCAGAGGGGTTTGGACATGGTTTTAAACCTCATTTCTCCAGTTCATTTCATAAAATATTCTCAGAGATCTTTGAACATGAATTCGATCAAGTTGCACCTGACATTCAGGTGGAGCTGTCTCTCTCTTTTTCTGAAGCTGCTAGAGGATGCACAAAGAATCTGTCTGTCACTGCACATGTTCCCTGCGATTCTTGTGGTGAGGCTTTTTTTTTTTTTTTTGGGCTCATCATTATTGAGGTGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

243

Amino Acids

27.23

Weight (kDa)

6.71

Isoelectric Point (pI)

43.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 73 - 135 6.9e-27 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 333
Acc16I TGCGCA 2 cut(s) 5, 205
AccI GTMKAC 1 cut(s) 425
AclWI GGATC 1 cut(s) 374
AcoI YGGCCR 2 cut(s) 54, 288
AcsI RAATTY 2 cut(s) 341, 566
AcuI CTGAAG 1 cut(s) 639
AflIII ACRYGT 1 cut(s) 661
AgsI TTSAA 2 cut(s) 347, 560
AluBI AGCT 6 cut(s) 15, 132, 149, 362, 601, 623
AluI AGCT 6 cut(s) 15, 132, 149, 362, 601, 623
Alw26I GTCTC 3 cut(s) 210, 362, 609
AlwI GGATC 1 cut(s) 374
AoxI GGCC 3 cut(s) 22, 54, 288
ApeKI GCWGC 3 cut(s) 129, 201, 623
ApoI RAATTY 2 cut(s) 341, 566
ArsI GACNNNNNNTTYG 2 cut(s) 632, 664
AspLEI GCGC 3 cut(s) 6, 206, 251
AsuHPI GGTGA 3 cut(s) 106, 446, 695
AxyI CCTNAGG 1 cut(s) 190
BalI TGGCCA 1 cut(s) 290
BanII GRGCYC 1 cut(s) 711
BbvI GCAGC 3 cut(s) 141, 188, 610
BccI CCATC 1 cut(s) 309
BcgI CGANNNNNNTGC 2 cut(s) 560, 594
BclI TGATCA 1 cut(s) 73
BcoDI GTCTC 3 cut(s) 210, 362, 609
BfaI CTAG 2 cut(s) 20, 627
BglII AGATCT 1 cut(s) 552
BisI GCNGC 3 cut(s) 130, 202, 624
BlsI GCNGC 3 cut(s) 131, 203, 625
BmiI GGNNCC 1 cut(s) 142
BmsI GCATC 4 cut(s) 298, 427, 475, 623
BpmI CTGGAG 1 cut(s) 508
BsaJI CCNNGG 1 cut(s) 99
BsaWI WCCGGW 1 cut(s) 208
Bse1I ACTGG 1 cut(s) 525
Bse21I CCTNAGG 1 cut(s) 190
Bse3DI GCAATG 1 cut(s) 371
BseDI CCNNGG 1 cut(s) 99
BseGI GGATG 2 cut(s) 301, 638
BseMI GCAATG 1 cut(s) 371
BseMII CTCAG 2 cut(s) 204, 561
BseNI ACTGG 1 cut(s) 525
BseXI GCAGC 3 cut(s) 141, 188, 610
BsgI GTGCAG 1 cut(s) 642
BshFI GGCC 3 cut(s) 24, 56, 290
BsiSI CCGG 3 cut(s) 31, 57, 209
BslFI GGGAC 1 cut(s) 332
BsmAI GTCTC 3 cut(s) 210, 362, 609
BsmFI GGGAC 1 cut(s) 332
BsnI GGCC 3 cut(s) 24, 56, 290
Bsp1286I GDGCHC 1 cut(s) 711
Bsp143I GATC 4 cut(s) 73, 379, 552, 571
BspANI GGCC 3 cut(s) 24, 56, 290
BspCNI CTCAG 2 cut(s) 203, 560
BspLI GGNNCC 1 cut(s) 142
BspPI GGATC 1 cut(s) 374
BspQI GCTCTTC 1 cut(s) 139
BsrDI GCAATG 1 cut(s) 371
BsrI ACTGG 1 cut(s) 525
BssECI CCNNGG 1 cut(s) 99
BssMI GATC 4 cut(s) 73, 379, 552, 571
BssNAI GTATAC 1 cut(s) 426
Bst1107I GTATAC 1 cut(s) 426
Bst6I CTCTTC 1 cut(s) 139
BstC8I GCNNGC 4 cut(s) 17, 253, 284, 288
BstDEI CTNAG 2 cut(s) 190, 547
BstEII GGTNACC 1 cut(s) 94
BstF5I GGATG 2 cut(s) 301, 638
BstHHI GCGC 3 cut(s) 6, 206, 251
BstKTI GATC 4 cut(s) 76, 382, 555, 574
BstMAI GTCTC 3 cut(s) 210, 362, 609
BstMBI GATC 4 cut(s) 73, 379, 552, 571
BstMWI GCNNNNNNNGC 4 cut(s) 12, 21, 155, 437
BstNSI RCATGY 1 cut(s) 665
BstPI GGTNACC 1 cut(s) 94
BstV1I GCAGC 3 cut(s) 141, 188, 610
BstX2I RGATCY 2 cut(s) 379, 552
BstYI RGATCY 2 cut(s) 379, 552
BstZ17I GTATAC 1 cut(s) 426
Bsu36I CCTNAGG 1 cut(s) 190
BsuRI GGCC 3 cut(s) 24, 56, 290
BtsCI GGATG 2 cut(s) 301, 638
BtsI GCAGTG 1 cut(s) 654
BtsIMutI CAGTG 2 cut(s) 69, 654
Cac8I GCNNGC 4 cut(s) 17, 253, 284, 288
CfoI GCGC 3 cut(s) 6, 206, 251
CviAII CATG 5 cut(s) 406, 470, 503, 563, 662
DdeI CTNAG 2 cut(s) 190, 547
DpnI GATC 4 cut(s) 75, 381, 554, 573
DpnII GATC 4 cut(s) 73, 379, 552, 571
DraI TTTAAA 1 cut(s) 511
EaeI YGGCCR 2 cut(s) 54, 288
Eam1104I CTCTTC 1 cut(s) 139
EarI CTCTTC 1 cut(s) 139
Eco147I AGGCCT 1 cut(s) 24
Eco24I GRGCYC 1 cut(s) 711
Eco57I CTGAAG 1 cut(s) 639
Eco81I CCTNAGG 1 cut(s) 190
Eco91I GGTNACC 1 cut(s) 94
EcoO65I GGTNACC 1 cut(s) 94
EcoRI GAATTC 1 cut(s) 566
EcoT38I GRGCYC 1 cut(s) 711
FaeI CATG 5 cut(s) 409, 473, 506, 566, 665
FalI AAGNNNNNCTT 2 cut(s) 346, 378
FaqI GGGAC 1 cut(s) 332
FatI CATG 5 cut(s) 405, 469, 502, 562, 661
FbaI TGATCA 1 cut(s) 73
FblI GTMKAC 1 cut(s) 425
Fnu4HI GCNGC 3 cut(s) 130, 202, 624
FokI GGATG 2 cut(s) 288, 645
FriOI GRGCYC 1 cut(s) 711
Fsp4HI GCNGC 3 cut(s) 130, 202, 624
FspBI CTAG 2 cut(s) 20, 627
FspI TGCGCA 2 cut(s) 5, 205
GlaI GCGC 3 cut(s) 5, 205, 250
GluI GCNGC 3 cut(s) 130, 202, 624
GsuI CTGGAG 1 cut(s) 508
HaeIII GGCC 3 cut(s) 24, 56, 290
HapII CCGG 3 cut(s) 31, 57, 209
HhaI GCGC 3 cut(s) 6, 206, 251
Hin1II CATG 5 cut(s) 409, 473, 506, 566, 665
Hin6I GCGC 3 cut(s) 4, 204, 249
HinP1I GCGC 3 cut(s) 4, 204, 249
HindIII AAGCTT 1 cut(s) 360
HinfI GANTC 4 cut(s) 62, 172, 643, 674
HpaII CCGG 3 cut(s) 31, 57, 209
HphI GGTGA 3 cut(s) 106, 446, 695
Hpy166II GTNNAC 1 cut(s) 426
Hpy188I TCNGA 3 cut(s) 246, 550, 619
Hpy188III TCNNGA 3 cut(s) 305, 347, 383
Hpy8I GTNNAC 1 cut(s) 426
HpyAV CCTTC 3 cut(s) 265, 336, 437
HpyCH4V TGCA 7 cut(s) 311, 376, 440, 488, 581, 636, 659
HpyF10VI GCNNNNNNNGC 4 cut(s) 12, 21, 155, 437
HpyF3I CTNAG 2 cut(s) 190, 547
Hsp92II CATG 5 cut(s) 409, 473, 506, 566, 665
HspAI GCGC 3 cut(s) 4, 204, 249
Ksp22I TGATCA 1 cut(s) 73
Kzo9I GATC 4 cut(s) 73, 379, 552, 571
LguI GCTCTTC 1 cut(s) 139
LmnI GCTCC 2 cut(s) 246, 598
Lsp1109I GCAGC 3 cut(s) 141, 188, 610
LweI GCATC 4 cut(s) 298, 427, 475, 623
MaeI CTAG 2 cut(s) 20, 627
MaeIII GTNAC 2 cut(s) 94, 652
MalI GATC 4 cut(s) 75, 381, 554, 573
MboI GATC 4 cut(s) 73, 379, 552, 571
MboII GAAGA 1 cut(s) 126
MflI RGATCY 2 cut(s) 379, 552
MhlI GDGCHC 1 cut(s) 711
MlsI TGGCCA 1 cut(s) 290
MluCI AATT 4 cut(s) 8, 341, 457, 566
MluNI TGGCCA 1 cut(s) 290
Mox20I TGGCCA 1 cut(s) 290
MscI TGGCCA 1 cut(s) 290
MseI TTAA 2 cut(s) 267, 510
MslI CAYNNNNRTG 2 cut(s) 306, 593
Msp20I TGGCCA 1 cut(s) 290
MspI CCGG 3 cut(s) 31, 57, 209
MwoI GCNNNNNNNGC 4 cut(s) 12, 21, 155, 437
NdeII GATC 4 cut(s) 73, 379, 552, 571
NlaIII CATG 5 cut(s) 409, 473, 506, 566, 665
NlaIV GGNNCC 1 cut(s) 142
NmuCI GTSAC 2 cut(s) 94, 652
NsbI TGCGCA 2 cut(s) 5, 205
NspI RCATGY 1 cut(s) 665
PceI AGGCCT 1 cut(s) 24
PciI ACATGT 1 cut(s) 661
PciSI GCTCTTC 1 cut(s) 139
PfeI GAWTC 4 cut(s) 62, 172, 643, 674
PkrI GCNGC 3 cut(s) 131, 203, 625
PscI ACATGT 1 cut(s) 661
PsiI TTATAA 1 cut(s) 333
PspEI GGTNACC 1 cut(s) 94
PspN4I GGNNCC 1 cut(s) 142
PsuI RGATCY 2 cut(s) 379, 552
RseI CAYNNNNRTG 2 cut(s) 306, 593
SapI GCTCTTC 1 cut(s) 139
SaqAI TTAA 2 cut(s) 267, 510
SatI GCNGC 3 cut(s) 130, 202, 624
Sau3AI GATC 4 cut(s) 73, 379, 552, 571
SduI GDGCHC 1 cut(s) 711
SfaNI GCATC 4 cut(s) 298, 427, 475, 623
SmiMI CAYNNNNRTG 2 cut(s) 306, 593
Sse9I AATT 4 cut(s) 8, 341, 457, 566
SseBI AGGCCT 1 cut(s) 24
SspI AATATT 1 cut(s) 543
SspMI CTAG 2 cut(s) 20, 627
StuI AGGCCT 1 cut(s) 24
TaqI TCGA 2 cut(s) 112, 570
TaqII GACCGA 1 cut(s) 113
TasI AATT 4 cut(s) 8, 341, 457, 566
TfiI GAWTC 4 cut(s) 62, 172, 643, 674
Tru1I TTAA 2 cut(s) 267, 510
Tru9I TTAA 2 cut(s) 267, 510
TscAI CASTG 2 cut(s) 76, 661
TseFI GTSAC 2 cut(s) 94, 652
TseI GCWGC 3 cut(s) 129, 201, 623
Tsp45I GTSAC 2 cut(s) 94, 652
TspDTI ATGAA 6 cut(s) 153, 240, 422, 519, 524, 579
TspGWI ACGGA 2 cut(s) 94, 133
TspRI CASTG 2 cut(s) 76, 661
XapI RAATTY 2 cut(s) 341, 566
XceI RCATGY 1 cut(s) 665
XmiI GTMKAC 1 cut(s) 425
XspI CTAG 2 cut(s) 20, 627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.