MD00G1136000.v1.1

Chaperone protein DNAj

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0001890
Physical Location & Seq
Reverse (-)
29534423 .. 29536806
2384 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1136000.v1.1.491

Sequence Viewer

Length: 717 bp
ATGCTAAAATGGAGCTTCCTTGGCCTGTTGCGGAGGCGTTTGGTGTCGTCGGTGGCGGTGGCGGCAGAGTCGCCTATTGTTCAAGTTGATTGGCATAGGGGCCACTCCTGGTTCAATAAGGCATTGTATCCAACACCTGGTTCGAGCTCTGGCGGTGCGGTGGCTGGTTTGGCTAGCTCATTGGGAAATCGTTATTTCCATGCCTCAGGGTTTTGCCGCGCACCTGAACGAGATTATTATGAGACTCTCGGTGTTTCGAAAAATGCAAGCGGAGATGAGATTAAAAAGGCTTTTCGCACGCTTGCCAAGAAATACCATCCAGATGCAAATAGGGACAATCCTTCTTCTAAAAGAAACTTTCAAGAGATAAGAGATGCCTATGAGACTTTGCAAGATCCTGAAAAGAGGGCACAATATGACAGGATGCGCTCAAGTGGGTCGGAAAACGTAGGATATACTGCTGGAGGTGCAGAGGGGTTTAGAAATGAGAATCAAAGTCACGGTAGTGCTGGGGCACAGGGGTTTAGATATGGTTTTGAAACTAATTTTTCCAGTTCATTCCATAAAATATTTCAAGAGATCTTTGAACATGAGTTCGATCAAGCTGGATCAAATATCCAGGTGGAGTTGTCACTTTCTTTCCCTGAAGCTGCTAGAGGATGCACAAAGCATCTCTCTGTCATTTCACATGTTCCCTGTGATTCGTGCTGTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

239

Amino Acids

26.42

Weight (kDa)

7.71

Isoelectric Point (pI)

45.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 78 - 140 6.2e-27 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 137
AccII CGCG 1 cut(s) 219
AciI CCGC 7 cut(s) 31, 56, 62, 153, 158, 217, 270
AclWI GGATC 2 cut(s) 389, 616
AcuI CTGAAG 1 cut(s) 666
AfiI CCNNNNNNNGG 1 cut(s) 137
AflIII ACRYGT 1 cut(s) 688
AgsI TTSAA 6 cut(s) 83, 115, 362, 539, 575, 587
AjnI CCWGG 3 cut(s) 107, 136, 618
AjuI GAANNNNNNNTTGG 2 cut(s) 124, 156
AleI CACNNNNGTG 1 cut(s) 504
AluBI AGCT 5 cut(s) 15, 147, 177, 605, 650
AluI AGCT 5 cut(s) 15, 147, 177, 605, 650
Alw21I GWGCWC 1 cut(s) 149
Alw26I GTCTC 2 cut(s) 236, 377
AlwI GGATC 2 cut(s) 389, 616
AoxI GGCC 2 cut(s) 22, 100
ApeKI GCWGC 1 cut(s) 650
AspLEI GCGC 2 cut(s) 221, 429
AspS9I GGNCC 1 cut(s) 100
AsuII TTCGAA 1 cut(s) 257
AsuNHI GCTAGC 1 cut(s) 173
AxyI CCTNAGG 1 cut(s) 205
BaeGI GKGCMC 2 cut(s) 412, 517
BanII GRGCYC 1 cut(s) 149
Bbv12I GWGCWC 1 cut(s) 149
BbvI GCAGC 1 cut(s) 637
BccI CCATC 1 cut(s) 324
BciT130I CCWGG 3 cut(s) 109, 138, 620
BciVI GTATCC 1 cut(s) 138
BcoDI GTCTC 2 cut(s) 236, 377
BfaI CTAG 2 cut(s) 174, 654
BfuI GTATCC 1 cut(s) 138
BglII AGATCT 1 cut(s) 579
BisI GCNGC 3 cut(s) 63, 217, 651
BlsI GCNGC 3 cut(s) 64, 218, 652
Bme1390I CCNGG 3 cut(s) 109, 138, 620
BmgT120I GGNCC 1 cut(s) 100
BmiI GGNNCC 1 cut(s) 101
BmrFI CCNGG 3 cut(s) 109, 138, 620
BmsI GCATC 5 cut(s) 313, 364, 414, 650, 679
BmtI GCTAGC 1 cut(s) 177
BpmI CTGGAG 1 cut(s) 483
Bpu14I TTCGAA 1 cut(s) 257
BpuEI CTTGAG 1 cut(s) 415
BsaJI CCNNGG 1 cut(s) 19
Bsc4I CCNNNNNNNGG 1 cut(s) 137
Bse1I ACTGG 1 cut(s) 552
Bse21I CCTNAGG 1 cut(s) 205
BseBI CCWGG 3 cut(s) 109, 138, 620
BseDI CCNNGG 1 cut(s) 19
BseGI GGATG 3 cut(s) 316, 429, 665
BseLI CCNNNNNNNGG 1 cut(s) 137
BseMII CTCAG 1 cut(s) 219
BseNI ACTGG 1 cut(s) 552
BseSI GKGCMC 2 cut(s) 412, 517
BseXI GCAGC 1 cut(s) 637
BseYI CCCAGC 1 cut(s) 509
BsgI GTGCAG 1 cut(s) 489
Bsh1236I CGCG 1 cut(s) 219
BshFI GGCC 2 cut(s) 24, 102
BsiHKAI GWGCWC 1 cut(s) 149
BslFI GGGAC 1 cut(s) 347
BslI CCNNNNNNNGG 1 cut(s) 137
BsmAI GTCTC 2 cut(s) 236, 377
BsmFI GGGAC 1 cut(s) 347
BsnI GGCC 2 cut(s) 24, 102
Bsp119I TTCGAA 1 cut(s) 257
Bsp1286I GDGCHC 3 cut(s) 149, 412, 517
Bsp143I GATC 4 cut(s) 394, 579, 598, 608
BspACI CCGC 7 cut(s) 31, 56, 62, 153, 158, 217, 270
BspANI GGCC 2 cut(s) 24, 102
BspCNI CTCAG 1 cut(s) 218
BspFNI CGCG 1 cut(s) 219
BspLI GGNNCC 1 cut(s) 101
BspOI GCTAGC 1 cut(s) 177
BspPI GGATC 2 cut(s) 389, 616
BspT104I TTCGAA 1 cut(s) 257
BsrI ACTGG 1 cut(s) 552
BssECI CCNNGG 1 cut(s) 19
BssMI GATC 4 cut(s) 394, 579, 598, 608
BssT1I CCWWGG 1 cut(s) 19
Bst2UI CCWGG 3 cut(s) 109, 138, 620
Bst4CI ACNGT 1 cut(s) 503
BstBI TTCGAA 1 cut(s) 257
BstC8I GCNNGC 4 cut(s) 175, 268, 299, 303
BstDEI CTNAG 1 cut(s) 205
BstF5I GGATG 3 cut(s) 316, 429, 665
BstFNI CGCG 1 cut(s) 219
BstHHI GCGC 2 cut(s) 221, 429
BstKTI GATC 4 cut(s) 397, 582, 601, 611
BstMAI GTCTC 2 cut(s) 236, 377
BstMBI GATC 4 cut(s) 394, 579, 598, 608
BstMWI GCNNNNNNNGC 4 cut(s) 21, 62, 170, 467
BstNI CCWGG 3 cut(s) 109, 138, 620
BstNSI RCATGY 1 cut(s) 692
BstSCI CCNGG 3 cut(s) 107, 136, 618
BstSLI GKGCMC 2 cut(s) 412, 517
BstUI CGCG 1 cut(s) 219
BstV1I GCAGC 1 cut(s) 637
BstX2I RGATCY 2 cut(s) 394, 579
BstYI RGATCY 2 cut(s) 394, 579
Bsu36I CCTNAGG 1 cut(s) 205
BsuI GTATCC 1 cut(s) 138
BsuRI GGCC 2 cut(s) 24, 102
BtsCI GGATG 3 cut(s) 316, 429, 665
Cac8I GCNNGC 4 cut(s) 175, 268, 299, 303
CfoI GCGC 2 cut(s) 221, 429
Cfr13I GGNCC 1 cut(s) 100
CsiI ACCWGGT 1 cut(s) 136
CviAII CATG 3 cut(s) 200, 590, 689
DdeI CTNAG 1 cut(s) 205
DpnI GATC 4 cut(s) 396, 581, 600, 610
DpnII GATC 4 cut(s) 394, 579, 598, 608
Ecl136II GAGCTC 1 cut(s) 147
Eco130I CCWWGG 1 cut(s) 19
Eco24I GRGCYC 1 cut(s) 149
Eco53kI GAGCTC 1 cut(s) 147
Eco57I CTGAAG 1 cut(s) 666
Eco81I CCTNAGG 1 cut(s) 205
EcoICRI GAGCTC 1 cut(s) 147
EcoRII CCWGG 3 cut(s) 107, 136, 618
EcoT14I CCWWGG 1 cut(s) 19
EcoT38I GRGCYC 1 cut(s) 149
ErhI CCWWGG 1 cut(s) 19
FaeI CATG 3 cut(s) 203, 593, 692
FaqI GGGAC 1 cut(s) 347
FatI CATG 3 cut(s) 199, 589, 688
Fnu4HI GCNGC 3 cut(s) 63, 217, 651
FokI GGATG 3 cut(s) 303, 436, 672
FriOI GRGCYC 1 cut(s) 149
Fsp4HI GCNGC 3 cut(s) 63, 217, 651
FspBI CTAG 2 cut(s) 174, 654
GlaI GCGC 2 cut(s) 220, 428
GluI GCNGC 3 cut(s) 63, 217, 651
GsaI CCCAGC 1 cut(s) 513
GsuI CTGGAG 1 cut(s) 483
HaeIII GGCC 2 cut(s) 24, 102
HhaI GCGC 2 cut(s) 221, 429
Hin1II CATG 3 cut(s) 203, 593, 692
Hin6I GCGC 2 cut(s) 219, 427
HinP1I GCGC 2 cut(s) 219, 427
HinfI GANTC 4 cut(s) 68, 244, 490, 701
Hpy188I TCNGA 1 cut(s) 442
Hpy188III TCNNGA 4 cut(s) 320, 362, 398, 575
Hpy99I CGWCG 1 cut(s) 52
HpyAV CCTTC 1 cut(s) 351
HpyCH4III ACNGT 1 cut(s) 503
HpyCH4IV ACGT 1 cut(s) 447
HpyCH4V TGCA 5 cut(s) 266, 326, 391, 470, 663
HpyF10VI GCNNNNNNNGC 4 cut(s) 21, 62, 170, 467
HpyF3I CTNAG 1 cut(s) 205
HpySE526I ACGT 1 cut(s) 447
Hsp92II CATG 3 cut(s) 203, 593, 692
HspAI GCGC 2 cut(s) 219, 427
Kzo9I GATC 4 cut(s) 394, 579, 598, 608
LmnI GCTCC 1 cut(s) 12
Lsp1109I GCAGC 1 cut(s) 637
LweI GCATC 5 cut(s) 313, 364, 414, 650, 679
MabI ACCWGGT 1 cut(s) 136
MaeI CTAG 2 cut(s) 174, 654
MaeII ACGT 1 cut(s) 447
MaeIII GTNAC 2 cut(s) 497, 630
MalI GATC 4 cut(s) 396, 581, 600, 610
MboI GATC 4 cut(s) 394, 579, 598, 608
MboII GAAGA 1 cut(s) 336
MflI RGATCY 2 cut(s) 394, 579
MhlI GDGCHC 3 cut(s) 149, 412, 517
MluCI AATT 1 cut(s) 544
MlyI GAGTC 2 cut(s) 77, 238
MmeI TCCRAC 2 cut(s) 155, 420
MnlI CCTC 6 cut(s) 27, 214, 399, 458, 466, 650
MseI TTAA 1 cut(s) 282
MslI CAYNNNNRTG 2 cut(s) 321, 504
MspR9I CCNGG 3 cut(s) 109, 138, 620
MvaI CCWGG 3 cut(s) 109, 138, 620
MvnI CGCG 1 cut(s) 219
MwoI GCNNNNNNNGC 4 cut(s) 21, 62, 170, 467
NdeII GATC 4 cut(s) 394, 579, 598, 608
NheI GCTAGC 1 cut(s) 173
NlaIII CATG 3 cut(s) 203, 593, 692
NlaIV GGNNCC 1 cut(s) 101
NmuCI GTSAC 2 cut(s) 497, 630
NspI RCATGY 1 cut(s) 692
NspV TTCGAA 1 cut(s) 257
OliI CACNNNNGTG 1 cut(s) 504
PciI ACATGT 1 cut(s) 688
PfeI GAWTC 2 cut(s) 490, 701
PflMI CCANNNNNTGG 1 cut(s) 137
PkrI GCNGC 3 cut(s) 64, 218, 652
PleI GAGTC 2 cut(s) 76, 238
PpsI GAGTC 2 cut(s) 76, 238
PscI ACATGT 1 cut(s) 688
Psp124BI GAGCTC 1 cut(s) 149
Psp6I CCWGG 3 cut(s) 107, 136, 618
PspFI CCCAGC 1 cut(s) 509
PspGI CCWGG 3 cut(s) 107, 136, 618
PspN4I GGNNCC 1 cut(s) 101
PspPI GGNCC 1 cut(s) 100
PsuI RGATCY 2 cut(s) 394, 579
RseI CAYNNNNRTG 2 cut(s) 321, 504
SacI GAGCTC 1 cut(s) 149
SaqAI TTAA 1 cut(s) 282
SatI GCNGC 3 cut(s) 63, 217, 651
Sau3AI GATC 4 cut(s) 394, 579, 598, 608
Sau96I GGNCC 1 cut(s) 100
SchI GAGTC 2 cut(s) 77, 238
ScrFI CCNGG 3 cut(s) 109, 138, 620
SduI GDGCHC 3 cut(s) 149, 412, 517
SexAI ACCWGGT 1 cut(s) 136
SfaNI GCATC 5 cut(s) 313, 364, 414, 650, 679
SfuI TTCGAA 1 cut(s) 257
SmiMI CAYNNNNRTG 2 cut(s) 321, 504
SmlI CTYRAG 1 cut(s) 430
SmoI CTYRAG 1 cut(s) 430
Sse9I AATT 1 cut(s) 544
SsiI CCGC 7 cut(s) 31, 56, 62, 153, 158, 217, 270
SspI AATATT 1 cut(s) 570
SspMI CTAG 2 cut(s) 174, 654
SstI GAGCTC 1 cut(s) 149
StyD4I CCNGG 3 cut(s) 107, 136, 618
StyI CCWWGG 1 cut(s) 19
TaaI ACNGT 1 cut(s) 503
TaiI ACGT 1 cut(s) 450
TaqI TCGA 3 cut(s) 143, 257, 597
TasI AATT 1 cut(s) 544
TauI GCSGC 2 cut(s) 65, 219
TfiI GAWTC 2 cut(s) 490, 701
Tru1I TTAA 1 cut(s) 282
Tru9I TTAA 1 cut(s) 282
TseFI GTSAC 2 cut(s) 497, 630
TseI GCWGC 1 cut(s) 650
Tsp45I GTSAC 2 cut(s) 497, 630
TspDTI ATGAA 1 cut(s) 546
Van91I CCANNNNNTGG 1 cut(s) 137
XceI RCATGY 1 cut(s) 692
XspI CTAG 2 cut(s) 174, 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.