Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001890

Physical Location & Seq

Genomic Coordinates Reverse (-)

30937512 .. 30938643

Gene Structure 1132 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0307900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGTCACTCGTACAGTTGGATAGCTTACTATGCAAAATAAGCAACGTGAGTCAGTTAAGGCAGCTCCATGCCCACCTCATTCAAAATTCCCTCCACCACCAAAACCAATGGGTGTCATTGCTCATCAACCAATGCACGCGCCTCCGTGCACCGCCTCCCTATACCCGTCTCATCTTCGACTCCACGTCTCGCCCCAACATCCATGTCTTCACCTCCATGCTCAAATATTACGCCCCTTTGGGCAATGTTTGCTCTAATCAAGTTGTTTCACTATATCAACTAATGCAGCGTTGTGAGGACGTATGTCTTGGTACTTTTGTGTACCCAGTTTTGATCAAATCGTCCGGCAGTGCCGGCATTGCGTTCCACGCGCATGTGGTGAAGTTGGGTCTTGGTTCTGATCATTATGTTCGCAATGCCATCATGAGTGTGTATTCGAAATATGGGCCGGTTGAGCATGCCCGAGACGTGTTCGATGAAATGCCTGAGAGGAGTCTTGTGGATTGGAACAACATGATTTCTGGGTATTGGAAGTGGGGGAATAAAGTTGAAGCGTGTAAACTGTTTGATATGATGCCTGAGAAGAGTGTTGTTACTTGGACTGCTATGGTTACCGGGTACGCTAGGATGAAGGATTTGGAGAATGCAAGAGGGTATTTTGATAACATTCCGGAGAAAAATGTGGTGTCGTGGAATGCAATGCTCTCGGCTTATGCTCAGAATGGCTCTCCAGAGGAGGCTTTGAGATTGTTTGATGGCATGATGGATTCTGGAGATAAACCAAATGAAACTACTTGGGCAATTGTCATTTCAGTGTGTTCGTCATGTGCTGTTCTTGATATGTATGCAAAGCATGGGAGCATCAATAGTGCTAGAGAAGTTTTTGATGAATTGGGGGTGTATAAGAGCTCTAGGACATGGAATGCCATGATATCAGCATATGCAAGAGTTGGGAATTTGACTTCAGCTAGAGAGCTCTTTGATAAGATGCCGGAAAGAGATGTTGTCTCATGGAACTCGATGATTTCTGGTTATGCTCAGAACAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

349

Amino Acids

39.46

Weight (kDa)

7.61

Isoelectric Point (pI)

39.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR	PF01535	169 - 196	7.6e-06	PPR repeat
PPR_2	PF13041	226 - 273	8e-13	PPR repeat family
PPR	PF01535	229 - 258	4.4e-09	PPR repeat
PPR_2	PF13041	304 - 334	5.9e-06	PPR repeat family
PPR	PF01535	306 - 334	2.4e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001890)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28210 AT1G28210 AT1G28210
fragaria_vesca	FvH4_5g36030 FvH4_5g36030 FvH4_5g36030 FvH4_5g36030 FvH4_5g36030 FvH4_5g36030 FvH4_5g36030 FvH4_5g36030 FvH4_5g36030 FvH4_5g36030 FvH4_5g36030 FvH4_5g36030 FvH4_5g36030 FvH4_5g36030 FvH4_5g36030 FvH4_5g36030 FvH4_5g36030
malus_domestica	MD00G1135700.v1.1 MD00G1135800.v1.1 MD00G1136000.v1.1 MD15G1379600.v1.1
prunus_persica	Prupe.1G525700_v2.0.a1
pyrus_communis	pycom08g16440 pycom15g34020
rosa_chinensis	RchiOBHm_Chr7g0237761
rosa_laevigata	RLG00000000969
rosa_multiflora	Rmu_ssc0000067.1_g000032
rosa_roxburghii	Rroxscaffold_3G00223770
rosa_rugosa	Rorug07G0307900 Rorug07G0308000 Rorug07G0308100 Rorug07G0308200 Rorug07G0308300 Rorug07G0308400 Rorug07G0308500
rosa_samantha	Rh4BG131900 Rh5DG050200 Rh7AG463900 Rh7BG434000 Rh7CG480900 Rh7CG481100 Rh7DG449800
rosa_wichuraiana	Rw7G038380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	139, 371
AccIII	TCCGGA	1 cut(s)	670
AciI	CCGC	1 cut(s)	152
AcsI	RAATTY	2 cut(s)	85, 955
AcuI	CTGAAG	1 cut(s)	948
AfaI	GTAC	4 cut(s)	12, 313, 323, 620
AflIII	ACRYGT	1 cut(s)	468
AgsI	TTSAA	2 cut(s)	83, 551
AhdI	GACNNNNNGTC	1 cut(s)	184
AjiI	CACGTC	2 cut(s)	186, 469
AluBI	AGCT	5 cut(s)	24, 64, 909, 968, 976
AluI	AGCT	5 cut(s)	24, 64, 909, 968, 976
Alw21I	GWGCWC	3 cut(s)	151, 911, 978
Alw26I	GTCTC	4 cut(s)	173, 192, 459, 1012
Alw44I	GTGCAC	1 cut(s)	147
Ama87I	CYCGRG	1 cut(s)	462
Aor13HI	TCCGGA	1 cut(s)	670
AoxI	GGCC	1 cut(s)	446
ApaLI	GTGCAC	1 cut(s)	147
ApeKI	GCWGC	2 cut(s)	61, 286
ApoI	RAATTY	2 cut(s)	85, 955
AspLEI	GCGC	2 cut(s)	141, 373
AspS9I	GGNCC	1 cut(s)	446
AsuC2I	CCSGG	1 cut(s)	616
AsuHPI	GGTGA	2 cut(s)	202, 391
AsuII	TTCGAA	1 cut(s)	437
AvaI	CYCGRG	1 cut(s)	462
BaeGI	GKGCMC	1 cut(s)	151
BaeI	ACNNNNGTAYC	2 cut(s)	303, 336
BanII	GRGCYC	2 cut(s)	911, 978
BbsI	GAAGAC	1 cut(s)	199
Bbv12I	GWGCWC	3 cut(s)	151, 911, 978
BbvI	GCAGC	2 cut(s)	73, 298
BccI	CCATC	3 cut(s)	428, 749, 757
BcgI	CGANNNNNNTGC	2 cut(s)	687, 721
BclI	TGATCA	2 cut(s)	333, 400
BcnI	CCSGG	1 cut(s)	616
BcoDI	GTCTC	4 cut(s)	173, 192, 459, 1012
BfaI	CTAG	4 cut(s)	624, 873, 912, 969
BisI	GCNGC	2 cut(s)	62, 287
BlsI	GCNGC	2 cut(s)	63, 288
Bme1390I	CCNGG	1 cut(s)	616
BmeRI	GACNNNNNGTC	1 cut(s)	184
BmeT110I	CYCGRG	1 cut(s)	462
BmgBI	CACGTC	2 cut(s)	186, 469
BmgT120I	GGNCC	1 cut(s)	446
BmrFI	CCNGG	1 cut(s)	616
BmrI	ACTGGG	1 cut(s)	320
BmsI	GCATC	3 cut(s)	564, 870, 978
BmuI	ACTGGG	1 cut(s)	320
BoxI	GACNNNNGTC	1 cut(s)	303
BpiI	GAAGAC	1 cut(s)	199
BpmI	CTGGAG	2 cut(s)	714, 792
Bpu14I	TTCGAA	1 cut(s)	437
BpuMI	CCSGG	1 cut(s)	616
BsaWI	WCCGGW	1 cut(s)	670
Bse118I	RCCGGY	2 cut(s)	353, 448
Bse1I	ACTGG	1 cut(s)	326
Bse3DI	GCAATG	5 cut(s)	116, 250, 357, 421, 705
BseAI	TCCGGA	1 cut(s)	670
BseGI	GGATG	2 cut(s)	198, 633
BseMI	GCAATG	5 cut(s)	116, 250, 357, 421, 705
BseMII	CTCAG	3 cut(s)	477, 570, 731
BseNI	ACTGG	1 cut(s)	326
BseRI	GAGGAG	2 cut(s)	505, 749
BseSI	GKGCMC	1 cut(s)	151
BseXI	GCAGC	2 cut(s)	73, 298
Bsh1236I	CGCG	2 cut(s)	139, 371
BshFI	GGCC	1 cut(s)	448
BsiHKAI	GWGCWC	3 cut(s)	151, 911, 978
BsiHKCI	CYCGRG	1 cut(s)	462
BsiSI	CCGG	6 cut(s)	345, 354, 449, 615, 671, 992
BsmAI	GTCTC	4 cut(s)	173, 192, 459, 1012
BsmBI	CGTCTC	3 cut(s)	173, 192, 459
BsmI	GAATGC	3 cut(s)	649, 700, 928
BsnI	GGCC	1 cut(s)	448
BsoBI	CYCGRG	1 cut(s)	462
Bsp119I	TTCGAA	1 cut(s)	437
Bsp1286I	GDGCHC	3 cut(s)	151, 911, 978
Bsp13I	TCCGGA	1 cut(s)	670
Bsp143I	GATC	2 cut(s)	333, 400
BspACI	CCGC	1 cut(s)	152
BspANI	GGCC	1 cut(s)	448
BspCNI	CTCAG	3 cut(s)	478, 571, 730
BspEI	TCCGGA	1 cut(s)	670
BspFNI	CGCG	2 cut(s)	139, 371
BspHI	TCATGA	1 cut(s)	423
BspT104I	TTCGAA	1 cut(s)	437
BsrDI	GCAATG	5 cut(s)	116, 250, 357, 421, 705
BsrFI	RCCGGY	2 cut(s)	353, 448
BsrI	ACTGG	1 cut(s)	326
BssAI	RCCGGY	2 cut(s)	353, 448
BssMI	GATC	2 cut(s)	333, 400
Bst4CI	ACNGT	2 cut(s)	15, 564
Bst6I	CTCTTC	1 cut(s)	578
BstAPI	GCANNNNNTGC	1 cut(s)	249
BstBI	TTCGAA	1 cut(s)	437
BstC8I	GCNNGC	3 cut(s)	137, 355, 459
BstDEI	CTNAG	4 cut(s)	486, 579, 717, 1038
BstEII	GGTNACC	1 cut(s)	610
BstF5I	GGATG	2 cut(s)	198, 633
BstFNI	CGCG	2 cut(s)	139, 371
BstHHI	GCGC	2 cut(s)	141, 373
BstKTI	GATC	2 cut(s)	336, 403
BstMAI	GTCTC	4 cut(s)	173, 192, 459, 1012
BstMBI	GATC	2 cut(s)	333, 400
BstMWI	GCNNNNNNNGC	7 cut(s)	30, 39, 249, 354, 359, 368, 454
BstNSI	RCATGY	2 cut(s)	377, 461
BstPAI	GACNNNNGTC	1 cut(s)	303
BstPI	GGTNACC	1 cut(s)	610
BstSCI	CCNGG	1 cut(s)	614
BstSLI	GKGCMC	1 cut(s)	151
BstUI	CGCG	2 cut(s)	139, 371
BstV1I	GCAGC	2 cut(s)	73, 298
BstV2I	GAAGAC	1 cut(s)	199
BsuRI	GGCC	1 cut(s)	448
BtrI	CACGTC	2 cut(s)	186, 469
BtsCI	GGATG	2 cut(s)	198, 633
BtsI	GCAGTG	1 cut(s)	355
BtsIMutI	CAGTG	2 cut(s)	355, 819
Cac8I	GCNNGC	3 cut(s)	137, 355, 459
CciI	TCATGA	1 cut(s)	423
CfoI	GCGC	2 cut(s)	141, 373
Cfr10I	RCCGGY	2 cut(s)	353, 448
Cfr13I	GGNCC	1 cut(s)	446
Csp6I	GTAC	4 cut(s)	11, 312, 322, 619
CviJI	RGCY	9 cut(s)	24, 64, 448, 710, 726, 740, 909, 968, 976
CviKI_1	RGCY	9 cut(s)	24, 64, 448, 710, 726, 740, 909, 968, 976
CviQI	GTAC	4 cut(s)	11, 312, 322, 619
DdeI	CTNAG	4 cut(s)	486, 579, 717, 1038
DpnI	GATC	2 cut(s)	335, 402
DpnII	GATC	2 cut(s)	333, 400
DriI	GACNNNNNGTC	1 cut(s)	184
Eam1104I	CTCTTC	1 cut(s)	578
Eam1105I	GACNNNNNGTC	1 cut(s)	184
EarI	CTCTTC	1 cut(s)	578
Ecl136II	GAGCTC	2 cut(s)	909, 976
Eco24I	GRGCYC	2 cut(s)	911, 978
Eco32I	GATATC	1 cut(s)	933
Eco53kI	GAGCTC	2 cut(s)	909, 976
Eco57I	CTGAAG	1 cut(s)	948
Eco88I	CYCGRG	1 cut(s)	462
Eco91I	GGTNACC	1 cut(s)	610
EcoICRI	GAGCTC	2 cut(s)	909, 976
EcoO65I	GGTNACC	1 cut(s)	610
EcoRV	GATATC	1 cut(s)	933
EcoT38I	GRGCYC	2 cut(s)	911, 978
Esp3I	CGTCTC	3 cut(s)	173, 192, 459
FauNDI	CATATG	1 cut(s)	940
FbaI	TGATCA	2 cut(s)	333, 400
Fnu4HI	GCNGC	2 cut(s)	62, 287
FokI	GGATG	2 cut(s)	185, 640
FriOI	GRGCYC	2 cut(s)	911, 978
Fsp4HI	GCNGC	2 cut(s)	62, 287
FspBI	CTAG	4 cut(s)	624, 873, 912, 969
GlaI	GCGC	2 cut(s)	140, 372
GluI	GCNGC	2 cut(s)	62, 287
GsuI	CTGGAG	2 cut(s)	714, 792
HaeIII	GGCC	1 cut(s)	448
HapII	CCGG	6 cut(s)	345, 354, 449, 615, 671, 992
HhaI	GCGC	2 cut(s)	141, 373
Hin6I	GCGC	2 cut(s)	139, 371
HinP1I	GCGC	2 cut(s)	139, 371
HinfI	GANTC	4 cut(s)	49, 179, 493, 767
HpaII	CCGG	6 cut(s)	345, 354, 449, 615, 671, 992
HphI	GGTGA	2 cut(s)	202, 391
Hpy166II	GTNNAC	3 cut(s)	149, 322, 560
Hpy188I	TCNGA	3 cut(s)	400, 720, 1041
Hpy188III	TCNNGA	5 cut(s)	424, 671, 731, 771, 836
Hpy8I	GTNNAC	3 cut(s)	149, 322, 560
HpyAV	CCTTC	1 cut(s)	625
HpyCH4III	ACNGT	2 cut(s)	15, 564
HpyCH4IV	ACGT	4 cut(s)	45, 185, 300, 468
HpyCH4V	TGCA	8 cut(s)	33, 135, 149, 286, 647, 698, 848, 944
HpyF10VI	GCNNNNNNNGC	7 cut(s)	30, 39, 249, 354, 359, 368, 454
HpyF3I	CTNAG	4 cut(s)	486, 579, 717, 1038
HpySE526I	ACGT	4 cut(s)	45, 185, 300, 468
HspAI	GCGC	2 cut(s)	139, 371
Kpn2I	TCCGGA	1 cut(s)	670
KroI	GCCGGC	1 cut(s)	353
KroNI	GCCGGC	1 cut(s)	355
Ksp22I	TGATCA	2 cut(s)	333, 400
Kzo9I	GATC	2 cut(s)	333, 400
LmnI	GCTCC	2 cut(s)	69, 858
Lsp1109I	GCAGC	2 cut(s)	73, 298
LweI	GCATC	3 cut(s)	564, 870, 978
MaeI	CTAG	4 cut(s)	624, 873, 912, 969
MaeII	ACGT	4 cut(s)	45, 185, 300, 468
MaeIII	GTNAC	3 cut(s)	3, 592, 610
MalI	GATC	2 cut(s)	335, 402
MboI	GATC	2 cut(s)	333, 400
MboII	GAAGA	3 cut(s)	166, 199, 595
MfeI	CAATTG	1 cut(s)	801
MhlI	GDGCHC	3 cut(s)	151, 911, 978
MluCI	AATT	4 cut(s)	85, 801, 890, 955
MlyI	GAGTC	3 cut(s)	58, 173, 502
MroI	TCCGGA	1 cut(s)	670
MroNI	GCCGGC	1 cut(s)	353
MseI	TTAA	1 cut(s)	56
MslI	CAYNNNNRTG	4 cut(s)	215, 372, 428, 812
MspI	CCGG	6 cut(s)	345, 354, 449, 615, 671, 992
MspR9I	CCNGG	1 cut(s)	616
MunI	CAATTG	1 cut(s)	801
Mva1269I	GAATGC	3 cut(s)	649, 700, 928
MvnI	CGCG	2 cut(s)	139, 371
MwoI	GCNNNNNNNGC	7 cut(s)	30, 39, 249, 354, 359, 368, 454
NaeI	GCCGGC	1 cut(s)	355
NciI	CCSGG	1 cut(s)	616
NdeI	CATATG	1 cut(s)	940
NdeII	GATC	2 cut(s)	333, 400
NgoMIV	GCCGGC	1 cut(s)	353
NmeAIII	GCCGAG	1 cut(s)	686
NmuCI	GTSAC	1 cut(s)	3
NspI	RCATGY	2 cut(s)	377, 461
NspV	TTCGAA	1 cut(s)	437
PaeI	GCATGC	1 cut(s)	461
PagI	TCATGA	1 cut(s)	423
PctI	GAATGC	3 cut(s)	649, 700, 928
PdiI	GCCGGC	1 cut(s)	355
PfeI	GAWTC	1 cut(s)	767
PkrI	GCNGC	2 cut(s)	63, 288
PleI	GAGTC	3 cut(s)	57, 173, 501
PpsI	GAGTC	3 cut(s)	57, 173, 501
PshAI	GACNNNNGTC	1 cut(s)	303
Psp124BI	GAGCTC	2 cut(s)	911, 978
PspEI	GGTNACC	1 cut(s)	610
PspPI	GGNCC	1 cut(s)	446
RsaI	GTAC	4 cut(s)	12, 313, 323, 620
RsaNI	GTAC	4 cut(s)	11, 312, 322, 619
RseI	CAYNNNNRTG	4 cut(s)	215, 372, 428, 812
SacI	GAGCTC	2 cut(s)	911, 978
SaqAI	TTAA	1 cut(s)	56
SatI	GCNGC	2 cut(s)	62, 287
Sau3AI	GATC	2 cut(s)	333, 400
Sau96I	GGNCC	1 cut(s)	446
SchI	GAGTC	3 cut(s)	58, 173, 502
ScrFI	CCNGG	1 cut(s)	616
SduI	GDGCHC	3 cut(s)	151, 911, 978
SfaNI	GCATC	3 cut(s)	564, 870, 978
SfuI	TTCGAA	1 cut(s)	437
SmiMI	CAYNNNNRTG	4 cut(s)	215, 372, 428, 812
SphI	GCATGC	1 cut(s)	461
Sse9I	AATT	4 cut(s)	85, 801, 890, 955
SsiI	CCGC	1 cut(s)	152
SspI	AATATT	1 cut(s)	227
SspMI	CTAG	4 cut(s)	624, 873, 912, 969
SstI	GAGCTC	2 cut(s)	911, 978
StyD4I	CCNGG	1 cut(s)	614
TaaI	ACNGT	2 cut(s)	15, 564
TaiI	ACGT	4 cut(s)	48, 188, 303, 471
TaqI	TCGA	4 cut(s)	177, 437, 474, 1019
TasI	AATT	4 cut(s)	85, 801, 890, 955
TfiI	GAWTC	1 cut(s)	767
Tru1I	TTAA	1 cut(s)	56
Tru9I	TTAA	1 cut(s)	56
TscAI	CASTG	2 cut(s)	355, 819
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	2 cut(s)	61, 286
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	4 cut(s)	492, 644, 801, 903
TspGWI	ACGGA	1 cut(s)	134
TspRI	CASTG	2 cut(s)	355, 819
VneI	GTGCAC	1 cut(s)	147
XapI	RAATTY	2 cut(s)	85, 955
XceI	RCATGY	2 cut(s)	377, 461
XspI	CTAG	4 cut(s)	624, 873, 912, 969

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.