Rh7AG463900

Chaperone protein DNAj

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0001890
Physical Location & Seq
Forward (+)
63842943 .. 63852926
9984 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG463900.1

Sequence Viewer

Length: 1080 bp
ATGCAGAAGGTTTTAGATATAATTATCAAACACATGGTTCTACTGCTGATGCAGAGGGGTTTGGACATGGTTTTAAACCTCATTTCTCCAGTTCATTTCATAAAATATTCTCAGAGGTATCTCAGTTCCATGTTCTATTTTAAATCTCAATGTAGCCTGTTACTGCAGGTAGTTGGAATCTCTAATCTTCATTATTCTGAAAGTTGTTTGATACTGCAGATCTTTGAACATGAATTCGATCAAGTTGCACCTGACATTCAGGTGCAGCTGTCTCTCTCTTTTTCTGAAGCTGCTAGAGGATGCACAAAGAATCTGTCTGTCACTGCATATGTTCCCTGCGATTCTTGTGATGGGCGTGGCTATCCACTAAAGGCCAAGACAAAAGTGTGTCCTATTTGCAGAGGTATTGGGAGAGTTACAATTTCTCCGTTCACATCAACATGCAGTACTTGTAAAGGGTCAGGCCAAATAATCAAGGAACATTGTATGTCATGTGGAGGATTAGGGATAGTTGAAGGTGCAAGAGAGGTTGAAGTTACCATCCCAGCAGGTGTGGATTCTGGAGATACAATCCGTGTACCAGAGGCTGGGAATAGTGGGCCACGGGGAAGTCAGCCAGGTTGGTTATACATTAAGCTAAAGGTTGCTGAAGATCCTGTTTTTGCTAGAGATGGTGCAGATGTTTATGTGGACTCTAATATCAGCTTTACTCAAGCTATTCTTGGTGGTAAGGTTGAGGTGCCAACTTTAACCGGGAAGACAGAAGTAAAAATACCAAAGGGGGTTCAGCCTGGAGAACACGTGGTACTAAGAGGCAAAGGACTACCGAAGCATGGTTTCCTAGTTCACCATGGAGACCAATATGTTCGTTTTCGAGTCCAGTTTCCGACTAAAATAAATGAACGTCAACATGCAATATTAGAAGAATTTGCGAAGGAGGAGATAATTCATGGAAACAGCAACTCCAACGATACAGACTGGTTTCAGCGGATAATTGAACGTGTTATGGGTCAGAGATTTGTGCTTAACTTCTCGATATTCTTATTGATCCTTTTTTTGCTGAGCAAAACCACGGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

359

Amino Acids

39.76

Weight (kDa)

8.42

Isoelectric Point (pI)

30.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ_C PF01556 86 - 296 1.1e-45 DnaJ C terminal domain
DnaJ_CXXCXGXG PF00684 113 - 167 2.5e-08 DnaJ central domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 539
Acc36I ACCTGC 2 cut(s) 157, 539
AccB1I GGYRCC 1 cut(s) 739
AccB7I CCANNNNNTGG 1 cut(s) 587
AciI CCGC 1 cut(s) 988
AclWI GGATC 2 cut(s) 647, 1042
AcsI RAATTY 2 cut(s) 233, 926
AcuI CTGAAG 2 cut(s) 306, 669
AcvI CACGTG 1 cut(s) 802
AfaI GTAC 3 cut(s) 448, 579, 807
AfiI CCNNNNNNNGG 2 cut(s) 587, 833
AflIII ACRYGT 2 cut(s) 799, 1000
AgsI TTSAA 4 cut(s) 227, 515, 533, 998
AjnI CCWGG 2 cut(s) 616, 790
AluBI AGCT 5 cut(s) 268, 290, 637, 705, 716
AluI AGCT 5 cut(s) 268, 290, 637, 705, 716
Alw26I GTCTC 2 cut(s) 276, 849
AlwI GGATC 2 cut(s) 647, 1042
AlwNI CAGNNNCTG 1 cut(s) 587
AoxI GGCC 3 cut(s) 372, 463, 599
ApeKI GCWGC 2 cut(s) 265, 290
ApoI RAATTY 2 cut(s) 233, 926
ArsI GACNNNNNNTTYG 2 cut(s) 299, 331
AspS9I GGNCC 1 cut(s) 599
AsuC2I CCSGG 1 cut(s) 754
AsuHPI GGTGA 1 cut(s) 839
BanI GGYRCC 1 cut(s) 739
BarI GAAGNNNNNNTAC 2 cut(s) 756, 788
BbrPI CACGTG 1 cut(s) 802
BbsI GAAGAC 1 cut(s) 764
BbvI GCAGC 2 cut(s) 277, 277
BccI CCATC 3 cut(s) 344, 548, 665
BcgI CGANNNNNNTGC 2 cut(s) 227, 261
BciT130I CCWGG 2 cut(s) 618, 792
BcnI CCSGG 1 cut(s) 754
BcoDI GTCTC 2 cut(s) 276, 849
BfaI CTAG 3 cut(s) 294, 666, 842
BfmI CTRYAG 2 cut(s) 164, 215
BfuAI ACCTGC 2 cut(s) 157, 539
BglII AGATCT 1 cut(s) 219
BisI GCNGC 2 cut(s) 266, 291
BlpI GCTNAGC 1 cut(s) 1061
BlsI GCNGC 2 cut(s) 267, 292
BmcAI AGTACT 1 cut(s) 448
Bme1390I CCNGG 3 cut(s) 618, 754, 792
BmgT120I GGNCC 1 cut(s) 599
BmiI GGNNCC 1 cut(s) 741
BmrFI CCNGG 3 cut(s) 618, 754, 792
BmsI GCATC 2 cut(s) 39, 290
BpiI GAAGAC 1 cut(s) 764
BpmI CTGGAG 3 cut(s) 72, 582, 813
Bpu1102I GCTNAGC 1 cut(s) 1061
BpuEI CTTGAG 1 cut(s) 696
BpuMI CCSGG 1 cut(s) 754
BsaAI YACGTR 1 cut(s) 802
BsaI GGTCTC 1 cut(s) 849
BsaJI CCNNGG 3 cut(s) 602, 850, 1071
BsaXI ACNNNNNCTCC 6 cut(s) 409, 439, 786, 816, 947, 977
Bsc4I CCNNNNNNNGG 2 cut(s) 587, 833
Bse1I ACTGG 3 cut(s) 89, 880, 983
BseBI CCWGG 2 cut(s) 618, 792
BseDI CCNNGG 3 cut(s) 602, 850, 1071
BseGI GGATG 2 cut(s) 305, 540
BseLI CCNNNNNNNGG 2 cut(s) 587, 833
BseMII CTCAG 3 cut(s) 125, 136, 1052
BseNI ACTGG 3 cut(s) 89, 880, 983
BseRI GAGGAG 1 cut(s) 953
BseXI GCAGC 2 cut(s) 277, 277
BseYI CCCAGC 2 cut(s) 544, 587
BsgI GTGCAG 2 cut(s) 284, 696
BshFI GGCC 3 cut(s) 374, 465, 601
BshNI GGYRCC 1 cut(s) 739
BsiSI CCGG 1 cut(s) 753
BslI CCNNNNNNNGG 2 cut(s) 587, 833
BsmAI GTCTC 2 cut(s) 276, 849
BsnI GGCC 3 cut(s) 374, 465, 601
Bso31I GGTCTC 1 cut(s) 849
Bsp143I GATC 4 cut(s) 219, 238, 652, 1047
Bsp1720I GCTNAGC 1 cut(s) 1061
Bsp19I CCATGG 1 cut(s) 850
BspACI CCGC 1 cut(s) 988
BspANI GGCC 3 cut(s) 374, 465, 601
BspCNI CTCAG 3 cut(s) 124, 135, 1053
BspLI GGNNCC 1 cut(s) 741
BspMAI CTGCAG 2 cut(s) 168, 219
BspMI ACCTGC 2 cut(s) 157, 539
BspPI GGATC 2 cut(s) 647, 1042
BspT107I GGYRCC 1 cut(s) 739
BspTNI GGTCTC 1 cut(s) 849
BsrI ACTGG 3 cut(s) 89, 880, 983
BssECI CCNNGG 3 cut(s) 602, 850, 1071
BssMI GATC 4 cut(s) 219, 238, 652, 1047
BssT1I CCWWGG 1 cut(s) 850
Bst2UI CCWGG 2 cut(s) 618, 792
BstBAI YACGTR 1 cut(s) 802
BstDEI CTNAG 4 cut(s) 111, 122, 809, 1061
BstDSI CCRYGG 3 cut(s) 602, 850, 1071
BstF5I GGATG 2 cut(s) 305, 540
BstKTI GATC 4 cut(s) 222, 241, 655, 1050
BstMAI GTCTC 2 cut(s) 276, 849
BstMBI GATC 4 cut(s) 219, 238, 652, 1047
BstNI CCWGG 2 cut(s) 618, 792
BstNSI RCATGY 2 cut(s) 444, 914
BstSCI CCNGG 3 cut(s) 616, 752, 790
BstSFI CTRYAG 2 cut(s) 164, 215
BstV1I GCAGC 2 cut(s) 277, 277
BstV2I GAAGAC 1 cut(s) 764
BstX2I RGATCY 2 cut(s) 219, 652
BstYI RGATCY 2 cut(s) 219, 652
BsuRI GGCC 3 cut(s) 374, 465, 601
BtgI CCRYGG 3 cut(s) 602, 850, 1071
BtsCI GGATG 2 cut(s) 305, 540
BtsI GCAGTG 1 cut(s) 321
BtsIMutI CAGTG 1 cut(s) 321
BveI ACCTGC 2 cut(s) 157, 539
CaiI CAGNNNCTG 1 cut(s) 587
Cfr13I GGNCC 1 cut(s) 599
Csp6I GTAC 3 cut(s) 447, 578, 806
CviQI GTAC 3 cut(s) 447, 578, 806
DdeI CTNAG 4 cut(s) 111, 122, 809, 1061
DpnI GATC 4 cut(s) 221, 240, 654, 1049
DpnII GATC 4 cut(s) 219, 238, 652, 1047
DraI TTTAAA 2 cut(s) 75, 142
Eco130I CCWWGG 1 cut(s) 850
Eco31I GGTCTC 1 cut(s) 849
Eco57I CTGAAG 2 cut(s) 306, 669
Eco72I CACGTG 1 cut(s) 802
EcoRI GAATTC 1 cut(s) 233
EcoRII CCWGG 2 cut(s) 616, 790
EcoT14I CCWWGG 1 cut(s) 850
ErhI CCWWGG 1 cut(s) 850
FalI AAGNNNNNCTT 2 cut(s) 705, 737
FauNDI CATATG 1 cut(s) 328
Fnu4HI GCNGC 2 cut(s) 266, 291
FokI GGATG 2 cut(s) 312, 527
Fsp4HI GCNGC 2 cut(s) 266, 291
FspBI CTAG 3 cut(s) 294, 666, 842
GluI GCNGC 2 cut(s) 266, 291
GsaI CCCAGC 2 cut(s) 548, 591
GsuI CTGGAG 3 cut(s) 72, 582, 813
HaeIII GGCC 3 cut(s) 374, 465, 601
HapII CCGG 1 cut(s) 753
HincII GTYRAC 1 cut(s) 908
HindII GTYRAC 1 cut(s) 908
HinfI GANTC 6 cut(s) 177, 310, 341, 557, 692, 876
HpaII CCGG 1 cut(s) 753
HphI GGTGA 1 cut(s) 839
Hpy166II GTNNAC 5 cut(s) 432, 578, 691, 847, 908
Hpy188I TCNGA 5 cut(s) 114, 199, 286, 888, 1014
Hpy188III TCNNGA 2 cut(s) 561, 1033
Hpy8I GTNNAC 5 cut(s) 432, 578, 691, 847, 908
HpyAV CCTTC 2 cut(s) 509, 928
HpyCH4IV ACGT 3 cut(s) 801, 904, 1000
HpyF3I CTNAG 4 cut(s) 111, 122, 809, 1061
HpySE526I ACGT 3 cut(s) 801, 904, 1000
Kzo9I GATC 4 cut(s) 219, 238, 652, 1047
Lsp1109I GCAGC 2 cut(s) 277, 277
LweI GCATC 2 cut(s) 39, 290
MaeI CTAG 3 cut(s) 294, 666, 842
MaeII ACGT 3 cut(s) 801, 904, 1000
MaeIII GTNAC 4 cut(s) 159, 319, 415, 535
MalI GATC 4 cut(s) 221, 240, 654, 1049
MboI GATC 4 cut(s) 219, 238, 652, 1047
MboII GAAGA 4 cut(s) 179, 662, 769, 935
MflI RGATCY 2 cut(s) 219, 652
MluCI AATT 6 cut(s) 21, 233, 420, 926, 945, 993
MlyI GAGTC 2 cut(s) 686, 885
MmeI TCCRAC 3 cut(s) 154, 911, 990
MseI TTAA 5 cut(s) 74, 141, 633, 749, 1026
MslI CAYNNNNRTG 2 cut(s) 260, 439
MspA1I CMGCKG 2 cut(s) 268, 988
MspI CCGG 1 cut(s) 753
MspR9I CCNGG 3 cut(s) 618, 754, 792
MvaI CCWGG 2 cut(s) 618, 792
NciI CCSGG 1 cut(s) 754
NcoI CCATGG 1 cut(s) 850
NdeI CATATG 1 cut(s) 328
NdeII GATC 4 cut(s) 219, 238, 652, 1047
NlaIV GGNNCC 1 cut(s) 741
NmuCI GTSAC 1 cut(s) 319
NspI RCATGY 2 cut(s) 444, 914
PaqCI CACCTGC 1 cut(s) 539
PfeI GAWTC 4 cut(s) 177, 310, 341, 557
PflMI CCANNNNNTGG 1 cut(s) 587
PkrI GCNGC 2 cut(s) 267, 292
PleI GAGTC 2 cut(s) 686, 884
PmaCI CACGTG 1 cut(s) 802
PmlI CACGTG 1 cut(s) 802
PpsI GAGTC 2 cut(s) 686, 884
Ppu21I YACGTR 1 cut(s) 802
Psp6I CCWGG 2 cut(s) 616, 790
PspCI CACGTG 1 cut(s) 802
PspFI CCCAGC 2 cut(s) 544, 587
PspGI CCWGG 2 cut(s) 616, 790
PspN4I GGNNCC 1 cut(s) 741
PspPI GGNCC 1 cut(s) 599
PsrI GAACNNNNNNTAC 2 cut(s) 789, 821
PstI CTGCAG 2 cut(s) 168, 219
PstNI CAGNNNCTG 1 cut(s) 587
PsuI RGATCY 2 cut(s) 219, 652
PvuII CAGCTG 1 cut(s) 268
RsaI GTAC 3 cut(s) 448, 579, 807
RsaNI GTAC 3 cut(s) 447, 578, 806
RseI CAYNNNNRTG 2 cut(s) 260, 439
SaqAI TTAA 5 cut(s) 74, 141, 633, 749, 1026
SatI GCNGC 2 cut(s) 266, 291
Sau3AI GATC 4 cut(s) 219, 238, 652, 1047
Sau96I GGNCC 1 cut(s) 599
ScaI AGTACT 1 cut(s) 448
SchI GAGTC 2 cut(s) 686, 885
ScrFI CCNGG 3 cut(s) 618, 754, 792
SfaNI GCATC 2 cut(s) 39, 290
SfcI CTRYAG 2 cut(s) 164, 215
SmiMI CAYNNNNRTG 2 cut(s) 260, 439
SmlI CTYRAG 1 cut(s) 711
SmoI CTYRAG 1 cut(s) 711
Sse9I AATT 6 cut(s) 21, 233, 420, 926, 945, 993
SsiI CCGC 1 cut(s) 988
SspI AATATT 2 cut(s) 107, 918
SspMI CTAG 3 cut(s) 294, 666, 842
StyD4I CCNGG 3 cut(s) 616, 752, 790
StyI CCWWGG 1 cut(s) 850
TaiI ACGT 3 cut(s) 804, 907, 1003
TaqI TCGA 3 cut(s) 237, 874, 1034
TasI AATT 6 cut(s) 21, 233, 420, 926, 945, 993
TatI WGTACW 1 cut(s) 446
TfiI GAWTC 4 cut(s) 177, 310, 341, 557
Tru1I TTAA 5 cut(s) 74, 141, 633, 749, 1026
Tru9I TTAA 5 cut(s) 74, 141, 633, 749, 1026
TscAI CASTG 1 cut(s) 328
TseFI GTSAC 1 cut(s) 319
TseI GCWGC 2 cut(s) 265, 290
Tsp45I GTSAC 1 cut(s) 319
TspDTI ATGAA 6 cut(s) 83, 88, 179, 246, 915, 938
TspGWI ACGGA 2 cut(s) 417, 563
TspRI CASTG 1 cut(s) 328
Van91I CCANNNNNTGG 1 cut(s) 587
XapI RAATTY 2 cut(s) 233, 926
XceI RCATGY 2 cut(s) 444, 914
XspI CTAG 3 cut(s) 294, 666, 842
ZrmI AGTACT 1 cut(s) 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.