Rh4BG131900

Chaperone protein DNAj

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0001890
Physical Location & Seq
Forward (+)
22188784 .. 22194750
5967 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG131900.1

Sequence Viewer

Length: 351 bp
ATGCTAGAAAGCAAAAAAGGAGGAGGAGACGCCCCAGATGGTGCCAGTGCGGCAGCTGGAACAGCCAGAAAGCGGCGAATTGGCAAGGTCAATCTTTCTGGTAGGGTCGAGTCTTCCGAGTCAGCCGAGAGAAAAACTCGGTGGAATTATAGGTGCCGAAGGCGTTTGGTTTCGTCGTTGGCCGGAGAATCAGCCATTGATCAAGGGAGGCTTTGCTCGTTGACCGAGGCATTGTATCGCTCACAAGCTTGCAGCTGCTATAAGCCTCCTAAAACTGTGAACATTGAACCAAATAATAGTCGAAGATCTTACTCCAAAGGAAGTATGCTACTGGAAGCTATGCAACTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

116

Amino Acids

12.69

Weight (kDa)

10.03

Isoelectric Point (pI)

74.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 41, 153
AciI CCGC 2 cut(s) 50, 73
AcoI YGGCCR 1 cut(s) 180
AcyI GRCGYC 1 cut(s) 30
AfiI CCNNNNNNNGG 1 cut(s) 72
AgsI TTSAA 1 cut(s) 287
AluBI AGCT 4 cut(s) 56, 248, 255, 338
AluI AGCT 4 cut(s) 56, 248, 255, 338
Alw26I GTCTC 1 cut(s) 21
AoxI GGCC 1 cut(s) 180
ApeKI GCWGC 3 cut(s) 53, 252, 255
BanI GGYRCC 2 cut(s) 41, 153
BbsI GAAGAC 1 cut(s) 105
BbvI GCAGC 3 cut(s) 65, 242, 264
BccI CCATC 1 cut(s) 32
BclI TGATCA 1 cut(s) 199
BcoDI GTCTC 1 cut(s) 21
BfaI CTAG 1 cut(s) 5
BfmI CTRYAG 1 cut(s) 347
BglI GCCNNNNNGGC 1 cut(s) 50
BglII AGATCT 1 cut(s) 305
BisI GCNGC 5 cut(s) 51, 54, 74, 253, 256
BlsI GCNGC 5 cut(s) 52, 55, 75, 254, 257
BmiI GGNNCC 2 cut(s) 43, 155
BpiI GAAGAC 1 cut(s) 105
BplI GAGNNNNNCTC 2 cut(s) 121, 153
BsaHI GRCGYC 1 cut(s) 30
BsaJI CCNNGG 1 cut(s) 225
Bsc4I CCNNNNNNNGG 1 cut(s) 72
Bse1I ACTGG 2 cut(s) 45, 336
BseDI CCNNGG 1 cut(s) 225
BseLI CCNNNNNNNGG 1 cut(s) 72
BseNI ACTGG 2 cut(s) 45, 336
BseRI GAGGAG 2 cut(s) 36, 39
BseXI GCAGC 3 cut(s) 65, 242, 264
BshFI GGCC 1 cut(s) 182
BshNI GGYRCC 2 cut(s) 41, 153
BsiSI CCGG 1 cut(s) 183
BslI CCNNNNNNNGG 1 cut(s) 72
BsmAI GTCTC 1 cut(s) 21
BsmBI CGTCTC 1 cut(s) 21
BsnI GGCC 1 cut(s) 182
Bsp143I GATC 2 cut(s) 199, 305
BspACI CCGC 2 cut(s) 50, 73
BspANI GGCC 1 cut(s) 182
BspLI GGNNCC 2 cut(s) 43, 155
BspT107I GGYRCC 2 cut(s) 41, 153
BsrI ACTGG 2 cut(s) 45, 336
BssECI CCNNGG 1 cut(s) 225
BssMI GATC 2 cut(s) 199, 305
BssNI GRCGYC 1 cut(s) 30
Bst4CI ACNGT 2 cut(s) 277, 348
BstACI GRCGYC 1 cut(s) 30
BstC8I GCNNGC 1 cut(s) 250
BstKTI GATC 2 cut(s) 202, 308
BstMAI GTCTC 1 cut(s) 21
BstMBI GATC 2 cut(s) 199, 305
BstMWI GCNNNNNNNGC 2 cut(s) 50, 62
BstSFI CTRYAG 1 cut(s) 347
BstV1I GCAGC 3 cut(s) 65, 242, 264
BstV2I GAAGAC 1 cut(s) 105
BstX2I RGATCY 1 cut(s) 305
BstYI RGATCY 1 cut(s) 305
BsuRI GGCC 1 cut(s) 182
BtsIMutI CAGTG 1 cut(s) 52
Cac8I GCNNGC 1 cut(s) 250
CseI GACGC 1 cut(s) 38
DpnI GATC 2 cut(s) 201, 307
DpnII GATC 2 cut(s) 199, 305
EaeI YGGCCR 1 cut(s) 180
Esp3I CGTCTC 1 cut(s) 21
FaiI YATR 4 cut(s) 150, 261, 326, 341
FalI AAGNNNNNCTT 2 cut(s) 195, 227
FbaI TGATCA 1 cut(s) 199
Fnu4HI GCNGC 5 cut(s) 51, 54, 74, 253, 256
Fsp4HI GCNGC 5 cut(s) 51, 54, 74, 253, 256
FspBI CTAG 1 cut(s) 5
GluI GCNGC 5 cut(s) 51, 54, 74, 253, 256
HaeIII GGCC 1 cut(s) 182
HapII CCGG 1 cut(s) 183
HgaI GACGC 1 cut(s) 38
Hin1I GRCGYC 1 cut(s) 30
HincII GTYRAC 1 cut(s) 222
HindII GTYRAC 1 cut(s) 222
HindIII AAGCTT 1 cut(s) 246
HinfI GANTC 3 cut(s) 110, 119, 188
HpaII CCGG 1 cut(s) 183
Hpy166II GTNNAC 2 cut(s) 222, 280
Hpy188I TCNGA 1 cut(s) 118
Hpy8I GTNNAC 2 cut(s) 222, 280
Hpy99I CGWCG 1 cut(s) 178
HpyAV CCTTC 1 cut(s) 153
HpyCH4III ACNGT 2 cut(s) 277, 348
HpyCH4V TGCA 2 cut(s) 252, 343
HpyF10VI GCNNNNNNNGC 2 cut(s) 50, 62
Hsp92I GRCGYC 1 cut(s) 30
Ksp22I TGATCA 1 cut(s) 199
Kzo9I GATC 2 cut(s) 199, 305
LpnPI CCDG 7 cut(s) 42, 48, 58, 79, 84, 196, 317
Lsp1109I GCAGC 3 cut(s) 65, 242, 264
MaeI CTAG 1 cut(s) 5
MalI GATC 2 cut(s) 201, 307
MboI GATC 2 cut(s) 199, 305
MboII GAAGA 2 cut(s) 105, 315
MflI RGATCY 1 cut(s) 305
MluCI AATT 2 cut(s) 78, 145
MlyI GAGTC 2 cut(s) 119, 128
MnlI CCTC 5 cut(s) 14, 17, 201, 220, 276
MspA1I CMGCKG 2 cut(s) 56, 255
MspI CCGG 1 cut(s) 183
MwoI GCNNNNNNNGC 2 cut(s) 50, 62
NdeII GATC 2 cut(s) 199, 305
NlaIV GGNNCC 2 cut(s) 43, 155
NmeAIII GCCGAG 1 cut(s) 151
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PfeI GAWTC 1 cut(s) 188
PkrI GCNGC 5 cut(s) 52, 55, 75, 254, 257
PleI GAGTC 2 cut(s) 118, 127
PpsI GAGTC 2 cut(s) 118, 127
PspN4I GGNNCC 2 cut(s) 43, 155
PsuI RGATCY 1 cut(s) 305
PvuII CAGCTG 2 cut(s) 56, 255
SatI GCNGC 5 cut(s) 51, 54, 74, 253, 256
Sau3AI GATC 2 cut(s) 199, 305
SchI GAGTC 2 cut(s) 119, 128
SetI ASST 6 cut(s) 58, 90, 155, 250, 257, 340
SfcI CTRYAG 1 cut(s) 347
Sse9I AATT 2 cut(s) 78, 145
SsiI CCGC 2 cut(s) 50, 73
SspMI CTAG 1 cut(s) 5
TaaI ACNGT 2 cut(s) 277, 348
TaqI TCGA 2 cut(s) 108, 301
TaqII GACCGA 1 cut(s) 239
TasI AATT 2 cut(s) 78, 145
TauI GCSGC 2 cut(s) 53, 76
TfiI GAWTC 1 cut(s) 188
TscAI CASTG 1 cut(s) 52
TseI GCWGC 3 cut(s) 53, 252, 255
TspRI CASTG 1 cut(s) 52
XspI CTAG 1 cut(s) 5
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.