MD00G1135800.v1.1

Chaperone protein DNAj

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0001890
Physical Location & Seq
Reverse (-)
29533116 .. 29533855
740 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1135800.v1.1.491

Sequence Viewer

Length: 276 bp
ATGAGAAACAATAGTTCAAACAAGATTATTGTCAAAAAGTTTGCACACATTTTGGATTCATTATTTTGCGTTGTTCGTTTTCATGGTTTCCATGTAACAATTTATGGGCGTGGCTATCCACTAAATGCCAAGACCAAAGTTTGTCCTACTTGCAGAGGTATTGGGAGAGTTACAGTTCCTCCATTCACATCAACATGCAGTACGTGTAAAGGATCGGGCCAAATAATCAAGGAATATTGCTTGTCATGCAGAGGATTAGGGAATATTGCTCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

92

Amino Acids

9.98

Weight (kDa)

9.81

Isoelectric Point (pI)

30.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ_CXXCXGXG PF00684 36 - 86 8.2e-08 DnaJ central domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 220
AfaI GTAC 1 cut(s) 202
AflIII ACRYGT 1 cut(s) 203
AgsI TTSAA 1 cut(s) 18
AlwI GGATC 1 cut(s) 220
AoxI GGCC 1 cut(s) 217
AspS9I GGNCC 1 cut(s) 217
BmgT120I GGNCC 1 cut(s) 217
BsaAI YACGTR 1 cut(s) 204
BsaXI ACNNNNNCTCC 2 cut(s) 163, 193
BshFI GGCC 1 cut(s) 219
BsnI GGCC 1 cut(s) 219
Bsp143I GATC 1 cut(s) 212
BspANI GGCC 1 cut(s) 219
BspPI GGATC 1 cut(s) 220
BssMI GATC 1 cut(s) 212
Bst4CI ACNGT 1 cut(s) 175
BstBAI YACGTR 1 cut(s) 204
BstKTI GATC 1 cut(s) 215
BstMBI GATC 1 cut(s) 212
BstMWI GCNNNNNNNGC 1 cut(s) 246
BstNSI RCATGY 1 cut(s) 198
BsuRI GGCC 1 cut(s) 219
Cfr13I GGNCC 1 cut(s) 217
Csp6I GTAC 1 cut(s) 201
CviAII CATG 4 cut(s) 83, 92, 195, 246
CviJI RGCY 2 cut(s) 114, 219
CviKI_1 RGCY 2 cut(s) 114, 219
CviQI GTAC 1 cut(s) 201
DpnI GATC 1 cut(s) 214
DpnII GATC 1 cut(s) 212
FaeI CATG 4 cut(s) 86, 95, 198, 249
FaiI YATR 6 cut(s) 84, 93, 105, 196, 247, 274
FatI CATG 4 cut(s) 82, 91, 194, 245
HaeIII GGCC 1 cut(s) 219
Hin1II CATG 4 cut(s) 86, 95, 198, 249
HinfI GANTC 1 cut(s) 56
HpyCH4III ACNGT 1 cut(s) 175
HpyCH4IV ACGT 1 cut(s) 203
HpyCH4V TGCA 4 cut(s) 44, 153, 198, 249
HpyF10VI GCNNNNNNNGC 1 cut(s) 246
HpySE526I ACGT 1 cut(s) 203
Hsp92II CATG 4 cut(s) 86, 95, 198, 249
Kzo9I GATC 1 cut(s) 212
LmnI GCTCC 1 cut(s) 274
MaeII ACGT 1 cut(s) 203
MaeIII GTNAC 2 cut(s) 94, 169
MalI GATC 1 cut(s) 214
MboI GATC 1 cut(s) 212
MluCI AATT 1 cut(s) 99
MnlI CCTC 3 cut(s) 149, 189, 245
MslI CAYNNNNRTG 1 cut(s) 193
MwoI GCNNNNNNNGC 1 cut(s) 246
NdeII GATC 1 cut(s) 212
NlaIII CATG 4 cut(s) 86, 95, 198, 249
NspI RCATGY 1 cut(s) 198
PfeI GAWTC 1 cut(s) 56
Ppu21I YACGTR 1 cut(s) 204
PspPI GGNCC 1 cut(s) 217
RsaI GTAC 1 cut(s) 202
RsaNI GTAC 1 cut(s) 201
RseI CAYNNNNRTG 1 cut(s) 193
Sau3AI GATC 1 cut(s) 212
Sau96I GGNCC 1 cut(s) 217
SetI ASST 2 cut(s) 160, 206
SmiMI CAYNNNNRTG 1 cut(s) 193
Sse9I AATT 1 cut(s) 99
SspI AATATT 2 cut(s) 236, 265
TaaI ACNGT 1 cut(s) 175
TaiI ACGT 1 cut(s) 206
TasI AATT 1 cut(s) 99
TfiI GAWTC 1 cut(s) 56
TspDTI ATGAA 2 cut(s) 48, 71
XceI RCATGY 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.