Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001890

Physical Location & Seq

Genomic Coordinates Reverse (-)

8680778 .. 8686722

Gene Structure 5945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000969

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGCGCAAATTGAGCTTGCTAGGCCTGTGCCGGAGGCGTTTGGTCACGTCATTGGCCGGAGAATCGCCAATTGATCAACGGAGGCTTTGCTCGGTGACCGAGGCATTGTATCGAACACAAGGTTTGAGCAGCTCTTCTGGTTCCGTAGCTGGTTTCGCTACTTCATTTGGGAATCGTTATTTCCACGCCTCAGGGTTTTGCTGCGCACCGGAACGAGACTTCTACGAAACTCTTGGCGTTTCTCGGAGCGCAAGCAAAGATGAGATTAAGAAGGCTTTTCGCACGCTGGCCAAAAAATACCATCCTGATGCAAACAGGGACAATCCTTCTTATAAGAGAAAATTTCAAGAGATAAGAGAAGCTTATGAGACATTGCAAGATCCTGAAAAGAGGGCAGAATATGACATGAAGCAATCAAGTGGGTATACTGCTGGTGATGCAGAAGGTTTTAGATATAATTATCAAACACATGGTTCTACTGCTGATGCAGAGGGGTTTGGACATGGTTTTAAACCTCATTTCTCCAGTTCATTTCATAAAATATTCTCAGAGATTTTTGAACATGAATTCGATCAAGTTGCACCTGACATTCAGGTGGAGCTGTCTCTCTCTTTTTCTGAAGTTGCTAGAGGATGCACAAAGAATCTGTCTGTTACTGCACATGTTCCCTGCGATTCTTGTGATGGGCGTGGCTATCCACTAAAGGCCAAGACAAAAGTGTGTCCTATTTGCAGAGGTATTGGGAGAGTTACAATTCCTCCGTTCACATCAACATGCAGTACTTGTAAAGGGTCAGGCCACATAATCAAGGAACATTGTATGTCATGTGGAGGATTAGGGATAGTAGAAGGTGCAAGAGAGGTTGAAGTTACCATCCCAGCAGGTGTGGATTCTGGAGATACAATCCGCGTACCAGAGGCTGGGAATAGTGGGCCACGGGGAAGTCAGCCAGGTTGGTTATACATTAAGCTAAAGGTTGCTGAAGATCCTGTTTTTGCTAGAGATGGTGCAGATGTTTATGTGGACTCTAATATCAGCTTTACTCAAGTGAGACTGATTTCTTGCATGTACATGACTTATAGTTACCTTGATTCCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

367

Amino Acids

40.3

Weight (kDa)

7.88

Isoelectric Point (pI)

41.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	73 - 135	1.4e-26	DnaJ domain
DnaJ_C	PF01556	197 - 350	3.5e-22	DnaJ C terminal domain
DnaJ_CXXCXGXG	PF00684	224 - 278	3.5e-08	DnaJ central domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001890)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28210 AT1G28210 AT1G28210
fragaria_vesca	FvH4_5g36030 FvH4_5g36030 FvH4_5g36030 FvH4_5g36030 FvH4_5g36030 FvH4_5g36030 FvH4_5g36030 FvH4_5g36030 FvH4_5g36030 FvH4_5g36030 FvH4_5g36030 FvH4_5g36030 FvH4_5g36030 FvH4_5g36030 FvH4_5g36030 FvH4_5g36030 FvH4_5g36030
malus_domestica	MD00G1135700.v1.1 MD00G1135800.v1.1 MD00G1136000.v1.1 MD15G1379600.v1.1
prunus_persica	Prupe.1G525700_v2.0.a1
pyrus_communis	pycom08g16440 pycom15g34020
rosa_chinensis	RchiOBHm_Chr7g0237761
rosa_laevigata	RLG00000000969
rosa_multiflora	Rmu_ssc0000067.1_g000032
rosa_roxburghii	Rroxscaffold_3G00223770
rosa_rugosa	Rorug07G0307900 Rorug07G0308000 Rorug07G0308100 Rorug07G0308200 Rorug07G0308300 Rorug07G0308400 Rorug07G0308500
rosa_samantha	Rh4BG131900 Rh5DG050200 Rh7AG463900 Rh7BG434000 Rh7CG480900 Rh7CG481100 Rh7DG449800
rosa_wichuraiana	Rw7G038380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	333
AarI	CACCTGC	1 cut(s)	872
Acc16I	TGCGCA	2 cut(s)	5, 205
Acc36I	ACCTGC	1 cut(s)	872
AccB7I	CCANNNNNTGG	1 cut(s)	920
AccI	GTMKAC	1 cut(s)	425
AccII	CGCG	1 cut(s)	909
AciI	CCGC	1 cut(s)	907
AclWI	GGATC	2 cut(s)	374, 980
AcoI	YGGCCR	2 cut(s)	54, 288
AcsI	RAATTY	2 cut(s)	341, 566
AcuI	CTGAAG	2 cut(s)	639, 1002
AfaI	GTAC	3 cut(s)	781, 912, 1070
AfiI	CCNNNNNNNGG	1 cut(s)	920
AflIII	ACRYGT	1 cut(s)	661
AgsI	TTSAA	3 cut(s)	347, 560, 866
AjiI	CACGTC	1 cut(s)	48
AjnI	CCWGG	1 cut(s)	949
AluBI	AGCT	7 cut(s)	15, 132, 149, 362, 601, 970, 1038
AluI	AGCT	7 cut(s)	15, 132, 149, 362, 601, 970, 1038
Alw26I	GTCTC	4 cut(s)	210, 362, 609, 1045
AlwI	GGATC	2 cut(s)	374, 980
AlwNI	CAGNNNCTG	1 cut(s)	920
AoxI	GGCC	6 cut(s)	22, 54, 288, 705, 796, 932
ApeKI	GCWGC	2 cut(s)	129, 201
ApoI	RAATTY	2 cut(s)	341, 566
ArsI	GACNNNNNNTTYG	2 cut(s)	632, 664
AspLEI	GCGC	3 cut(s)	6, 206, 251
AspS9I	GGNCC	1 cut(s)	932
AsuHPI	GGTGA	2 cut(s)	106, 446
AxyI	CCTNAGG	1 cut(s)	190
BalI	TGGCCA	1 cut(s)	290
BbvI	GCAGC	2 cut(s)	141, 188
BccI	CCATC	4 cut(s)	309, 677, 881, 998
BcgI	CGANNNNNNTGC	2 cut(s)	560, 594
BciT130I	CCWGG	1 cut(s)	951
BclI	TGATCA	1 cut(s)	73
BcoDI	GTCTC	4 cut(s)	210, 362, 609, 1045
BfaI	CTAG	3 cut(s)	20, 627, 999
BfuAI	ACCTGC	1 cut(s)	872
BisI	GCNGC	2 cut(s)	130, 202
BlsI	GCNGC	2 cut(s)	131, 203
BmcAI	AGTACT	1 cut(s)	781
Bme1390I	CCNGG	1 cut(s)	951
BmgBI	CACGTC	1 cut(s)	48
BmgT120I	GGNCC	1 cut(s)	932
BmiI	GGNNCC	1 cut(s)	142
BmrFI	CCNGG	1 cut(s)	951
BmsI	GCATC	4 cut(s)	298, 427, 475, 623
BpmI	CTGGAG	2 cut(s)	508, 915
BpuEI	CTTGAG	1 cut(s)	1029
BsaJI	CCNNGG	2 cut(s)	99, 935
BsaWI	WCCGGW	1 cut(s)	208
BsaXI	ACNNNNNCTCC	2 cut(s)	742, 772
Bsc4I	CCNNNNNNNGG	1 cut(s)	920
Bse1I	ACTGG	1 cut(s)	525
Bse21I	CCTNAGG	1 cut(s)	190
Bse3DI	GCAATG	1 cut(s)	371
BseBI	CCWGG	1 cut(s)	951
BseDI	CCNNGG	2 cut(s)	99, 935
BseGI	GGATG	3 cut(s)	301, 638, 873
BseLI	CCNNNNNNNGG	1 cut(s)	920
BseMI	GCAATG	1 cut(s)	371
BseMII	CTCAG	2 cut(s)	204, 561
BseNI	ACTGG	1 cut(s)	525
BseXI	GCAGC	2 cut(s)	141, 188
BseYI	CCCAGC	2 cut(s)	877, 920
BsgI	GTGCAG	2 cut(s)	642, 1029
Bsh1236I	CGCG	1 cut(s)	909
BshFI	GGCC	6 cut(s)	24, 56, 290, 707, 798, 934
BsiSI	CCGG	3 cut(s)	31, 57, 209
BslFI	GGGAC	1 cut(s)	332
BslI	CCNNNNNNNGG	1 cut(s)	920
BsmAI	GTCTC	4 cut(s)	210, 362, 609, 1045
BsmFI	GGGAC	1 cut(s)	332
BsnI	GGCC	6 cut(s)	24, 56, 290, 707, 798, 934
Bsp1407I	TGTACA	1 cut(s)	1068
Bsp143I	GATC	4 cut(s)	73, 379, 571, 985
BspACI	CCGC	1 cut(s)	907
BspANI	GGCC	6 cut(s)	24, 56, 290, 707, 798, 934
BspCNI	CTCAG	2 cut(s)	203, 560
BspFNI	CGCG	1 cut(s)	909
BspLI	GGNNCC	1 cut(s)	142
BspMI	ACCTGC	1 cut(s)	872
BspPI	GGATC	2 cut(s)	374, 980
BspQI	GCTCTTC	1 cut(s)	139
BsrDI	GCAATG	1 cut(s)	371
BsrGI	TGTACA	1 cut(s)	1068
BsrI	ACTGG	1 cut(s)	525
BssECI	CCNNGG	2 cut(s)	99, 935
BssMI	GATC	4 cut(s)	73, 379, 571, 985
BssNAI	GTATAC	1 cut(s)	426
Bst1107I	GTATAC	1 cut(s)	426
Bst2UI	CCWGG	1 cut(s)	951
Bst6I	CTCTTC	1 cut(s)	139
BstAUI	TGTACA	1 cut(s)	1068
BstC8I	GCNNGC	4 cut(s)	17, 253, 284, 288
BstDEI	CTNAG	2 cut(s)	190, 547
BstDSI	CCRYGG	1 cut(s)	935
BstEII	GGTNACC	1 cut(s)	94
BstF5I	GGATG	3 cut(s)	301, 638, 873
BstFNI	CGCG	1 cut(s)	909
BstHHI	GCGC	3 cut(s)	6, 206, 251
BstKTI	GATC	4 cut(s)	76, 382, 574, 988
BstMAI	GTCTC	4 cut(s)	210, 362, 609, 1045
BstMBI	GATC	4 cut(s)	73, 379, 571, 985
BstMWI	GCNNNNNNNGC	4 cut(s)	12, 21, 155, 437
BstNI	CCWGG	1 cut(s)	951
BstNSI	RCATGY	3 cut(s)	665, 777, 1069
BstPI	GGTNACC	1 cut(s)	94
BstSCI	CCNGG	1 cut(s)	949
BstUI	CGCG	1 cut(s)	909
BstV1I	GCAGC	2 cut(s)	141, 188
BstX2I	RGATCY	2 cut(s)	379, 985
BstYI	RGATCY	2 cut(s)	379, 985
BstZ17I	GTATAC	1 cut(s)	426
Bsu36I	CCTNAGG	1 cut(s)	190
BsuRI	GGCC	6 cut(s)	24, 56, 290, 707, 798, 934
BtgI	CCRYGG	1 cut(s)	935
BtrI	CACGTC	1 cut(s)	48
BtsCI	GGATG	3 cut(s)	301, 638, 873
BveI	ACCTGC	1 cut(s)	872
Cac8I	GCNNGC	4 cut(s)	17, 253, 284, 288
CaiI	CAGNNNCTG	1 cut(s)	920
CfoI	GCGC	3 cut(s)	6, 206, 251
Cfr13I	GGNCC	1 cut(s)	932
Csp6I	GTAC	3 cut(s)	780, 911, 1069
CviAII	CATG	9 cut(s)	406, 470, 503, 563, 662, 774, 825, 1066, 1072
CviQI	GTAC	3 cut(s)	780, 911, 1069
DdeI	CTNAG	2 cut(s)	190, 547
DpnI	GATC	4 cut(s)	75, 381, 573, 987
DpnII	GATC	4 cut(s)	73, 379, 571, 985
DraI	TTTAAA	1 cut(s)	511
EaeI	YGGCCR	2 cut(s)	54, 288
Eam1104I	CTCTTC	1 cut(s)	139
EarI	CTCTTC	1 cut(s)	139
Eco147I	AGGCCT	1 cut(s)	24
Eco57I	CTGAAG	2 cut(s)	639, 1002
Eco81I	CCTNAGG	1 cut(s)	190
Eco91I	GGTNACC	1 cut(s)	94
EcoO65I	GGTNACC	1 cut(s)	94
EcoRI	GAATTC	1 cut(s)	566
EcoRII	CCWGG	1 cut(s)	949
FaeI	CATG	9 cut(s)	409, 473, 506, 566, 665, 777, 828, 1069, 1075
FalI	AAGNNNNNCTT	2 cut(s)	346, 378
FaqI	GGGAC	1 cut(s)	332
FatI	CATG	9 cut(s)	405, 469, 502, 562, 661, 773, 824, 1065, 1071
FauNDI	CATATG	1 cut(s)	1097
FbaI	TGATCA	1 cut(s)	73
FblI	GTMKAC	1 cut(s)	425
Fnu4HI	GCNGC	2 cut(s)	130, 202
FokI	GGATG	3 cut(s)	288, 645, 860
Fsp4HI	GCNGC	2 cut(s)	130, 202
FspBI	CTAG	3 cut(s)	20, 627, 999
FspI	TGCGCA	2 cut(s)	5, 205
GlaI	GCGC	3 cut(s)	5, 205, 250
GluI	GCNGC	2 cut(s)	130, 202
GsaI	CCCAGC	2 cut(s)	881, 924
GsuI	CTGGAG	2 cut(s)	508, 915
HaeIII	GGCC	6 cut(s)	24, 56, 290, 707, 798, 934
HapII	CCGG	3 cut(s)	31, 57, 209
HhaI	GCGC	3 cut(s)	6, 206, 251
Hin1II	CATG	9 cut(s)	409, 473, 506, 566, 665, 777, 828, 1069, 1075
Hin6I	GCGC	3 cut(s)	4, 204, 249
HinP1I	GCGC	3 cut(s)	4, 204, 249
HindIII	AAGCTT	1 cut(s)	360
HinfI	GANTC	7 cut(s)	62, 172, 643, 674, 890, 1025, 1091
HpaII	CCGG	3 cut(s)	31, 57, 209
HphI	GGTGA	2 cut(s)	106, 446
Hpy166II	GTNNAC	3 cut(s)	426, 765, 1024
Hpy188I	TCNGA	3 cut(s)	246, 550, 619
Hpy188III	TCNNGA	4 cut(s)	305, 347, 383, 894
Hpy8I	GTNNAC	3 cut(s)	426, 765, 1024
HpyAV	CCTTC	4 cut(s)	265, 336, 437, 842
HpyCH4IV	ACGT	1 cut(s)	47
HpyF10VI	GCNNNNNNNGC	4 cut(s)	12, 21, 155, 437
HpyF3I	CTNAG	2 cut(s)	190, 547
HpySE526I	ACGT	1 cut(s)	47
Hsp92II	CATG	9 cut(s)	409, 473, 506, 566, 665, 777, 828, 1069, 1075
HspAI	GCGC	3 cut(s)	4, 204, 249
Ksp22I	TGATCA	1 cut(s)	73
Kzo9I	GATC	4 cut(s)	73, 379, 571, 985
LguI	GCTCTTC	1 cut(s)	139
LmnI	GCTCC	2 cut(s)	246, 598
Lsp1109I	GCAGC	2 cut(s)	141, 188
LweI	GCATC	4 cut(s)	298, 427, 475, 623
MaeI	CTAG	3 cut(s)	20, 627, 999
MaeII	ACGT	1 cut(s)	47
MaeIII	GTNAC	6 cut(s)	43, 94, 652, 748, 868, 1082
MalI	GATC	4 cut(s)	75, 381, 573, 987
MboI	GATC	4 cut(s)	73, 379, 571, 985
MboII	GAAGA	2 cut(s)	126, 995
MfeI	CAATTG	1 cut(s)	69
MflI	RGATCY	2 cut(s)	379, 985
MlsI	TGGCCA	1 cut(s)	290
MluCI	AATT	6 cut(s)	8, 69, 341, 457, 566, 753
MluNI	TGGCCA	1 cut(s)	290
MlyI	GAGTC	1 cut(s)	1019
Mox20I	TGGCCA	1 cut(s)	290
MscI	TGGCCA	1 cut(s)	290
MseI	TTAA	3 cut(s)	267, 510, 966
MslI	CAYNNNNRTG	4 cut(s)	306, 593, 772, 1070
Msp20I	TGGCCA	1 cut(s)	290
MspI	CCGG	3 cut(s)	31, 57, 209
MspR9I	CCNGG	1 cut(s)	951
MunI	CAATTG	1 cut(s)	69
MvaI	CCWGG	1 cut(s)	951
MvnI	CGCG	1 cut(s)	909
MwoI	GCNNNNNNNGC	4 cut(s)	12, 21, 155, 437
NdeI	CATATG	1 cut(s)	1097
NdeII	GATC	4 cut(s)	73, 379, 571, 985
NlaIII	CATG	9 cut(s)	409, 473, 506, 566, 665, 777, 828, 1069, 1075
NlaIV	GGNNCC	1 cut(s)	142
NmuCI	GTSAC	2 cut(s)	43, 94
NsbI	TGCGCA	2 cut(s)	5, 205
NspI	RCATGY	3 cut(s)	665, 777, 1069
PaqCI	CACCTGC	1 cut(s)	872
PceI	AGGCCT	1 cut(s)	24
PciI	ACATGT	1 cut(s)	661
PciSI	GCTCTTC	1 cut(s)	139
PfeI	GAWTC	6 cut(s)	62, 172, 643, 674, 890, 1091
PflMI	CCANNNNNTGG	1 cut(s)	920
PkrI	GCNGC	2 cut(s)	131, 203
PleI	GAGTC	1 cut(s)	1019
PpsI	GAGTC	1 cut(s)	1019
PscI	ACATGT	1 cut(s)	661
PsiI	TTATAA	1 cut(s)	333
Psp6I	CCWGG	1 cut(s)	949
PspEI	GGTNACC	1 cut(s)	94
PspFI	CCCAGC	2 cut(s)	877, 920
PspGI	CCWGG	1 cut(s)	949
PspN4I	GGNNCC	1 cut(s)	142
PspPI	GGNCC	1 cut(s)	932
PstNI	CAGNNNCTG	1 cut(s)	920
PsuI	RGATCY	2 cut(s)	379, 985
RsaI	GTAC	3 cut(s)	781, 912, 1070
RsaNI	GTAC	3 cut(s)	780, 911, 1069
RseI	CAYNNNNRTG	4 cut(s)	306, 593, 772, 1070
SapI	GCTCTTC	1 cut(s)	139
SaqAI	TTAA	3 cut(s)	267, 510, 966
SatI	GCNGC	2 cut(s)	130, 202
Sau3AI	GATC	4 cut(s)	73, 379, 571, 985
Sau96I	GGNCC	1 cut(s)	932
ScaI	AGTACT	1 cut(s)	781
SchI	GAGTC	1 cut(s)	1019
ScrFI	CCNGG	1 cut(s)	951
SfaNI	GCATC	4 cut(s)	298, 427, 475, 623
SmiMI	CAYNNNNRTG	4 cut(s)	306, 593, 772, 1070
SmlI	CTYRAG	1 cut(s)	1044
SmoI	CTYRAG	1 cut(s)	1044
Sse9I	AATT	6 cut(s)	8, 69, 341, 457, 566, 753
SseBI	AGGCCT	1 cut(s)	24
SsiI	CCGC	1 cut(s)	907
SspI	AATATT	1 cut(s)	543
SspMI	CTAG	3 cut(s)	20, 627, 999
StuI	AGGCCT	1 cut(s)	24
StyD4I	CCNGG	1 cut(s)	949
TaiI	ACGT	1 cut(s)	50
TaqI	TCGA	2 cut(s)	112, 570
TaqII	GACCGA	1 cut(s)	113
TasI	AATT	6 cut(s)	8, 69, 341, 457, 566, 753
TatI	WGTACW	2 cut(s)	779, 1068
TfiI	GAWTC	6 cut(s)	62, 172, 643, 674, 890, 1091
Tru1I	TTAA	3 cut(s)	267, 510, 966
Tru9I	TTAA	3 cut(s)	267, 510, 966
TseFI	GTSAC	2 cut(s)	43, 94
TseI	GCWGC	2 cut(s)	129, 201
Tsp45I	GTSAC	2 cut(s)	43, 94
TspDTI	ATGAA	5 cut(s)	153, 422, 519, 524, 579
TspGWI	ACGGA	3 cut(s)	94, 133, 750
Van91I	CCANNNNNTGG	1 cut(s)	920
XapI	RAATTY	2 cut(s)	341, 566
XceI	RCATGY	3 cut(s)	665, 777, 1069
XmiI	GTMKAC	1 cut(s)	425
XspI	CTAG	3 cut(s)	20, 627, 999
ZrmI	AGTACT	1 cut(s)	781

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.