Rmu_ssc0000067.1_g000032

Chaperone protein DNAj

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000067.1
Physical Location & Seq
Reverse (-)
94728 .. 103349
8622 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000067.1_g000032.1.cds

Sequence Viewer

Length: 1536 bp
ctggaccgtcgttcgttccgattcttcatttctcgattcttcttccactcaaatttccagagcaaattcccagattcgaaattagcagaatccacttcacaaaaccctgacgcctctgacattatgcgcaaattgagcttgctaggcctgtgccggaggcgtttggtttcgtcattggccggagaatcgcccattcatcaacggaggctttgctcggtgaccgaggcattgtatcgaacacaaggtttgagcagctcttctggttccgtagctggtttcgctacttcgtttgggaatcgttatttccatgcgtcagggttttgctgcgcaccggaacgagactactacgaaactcttggcgtttctcggagcgcaagcaaagatgagattaagaaggcttttcgcacgctggccaaaaaataccatcctgatgcaaacagggacaatccttcttataagagaaaatttcaagagataagagaagcttatgagacattgcaagatcctgaaaagagggcagaatatgacatgaagcaatcaagtgggtatactgctggtgatgcagaaggttttagatataattatcaaacacatggttctactgctgatgcagaagggtttggacatggttttaaacctcatttctccagttcatttcataaaatattctcagagatctttgaacatgaatttgatcaagttgcacctgacattcaggtggagctgtctctctctttttctgaagctgctagaggatgcacaaagaatctgtctgtcactgcacatgttccctgcgattcttgtgatgggcgtggctatccactaaaggccaagacaaaagtgtgtcctatttgcagaggtattgggagagttacaattcctccgttcacatcaacatgcagtacttgtaaagggtcaggccaaataatcaaggaacattgtatgtcatgtggaggattagggatagttgaaggtgcaagagaggttgaagttaccatcccagcaggtgtggattctggagatacaatccgcgtaccagaggctgggaatagtgggccacggggaagtcagccaggttggttatacattaagctaaaggttgctgaagatcctgtttttgctagagatggtgcagatgtttatgtggactctaatatcagctttactcaagctattcttggtggtaaggttgaggtgccaactttaaccgggaagacagaagtaaaaataccaaagggggttcagcctggagaacacgtggtactaagaggcaaaggactaccgaagcatggtttcctagttcaccatggagaccaatatgttcgctttcgagtccagtttccgactaaaataaatgaacgtcaacatgcgatattagaagaatttgcgaaggaggagataattcatggaaacagcaactccaacgataaagactggtttcagcggataattgaacgtgttatgggtcagagatttgtgcttgacttctcgatattcttattgatcctttttttgctgagcaaaaccacgggctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

511

Amino Acids

56.87

Weight (kDa)

8.74

Isoelectric Point (pI)

36.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 456
AarI CACCTGC 1 cut(s) 995
Acc16I TGCGCA 2 cut(s) 128, 328
Acc36I ACCTGC 1 cut(s) 995
AccB1I GGYRCC 1 cut(s) 1195
AccB7I CCANNNNNTGG 1 cut(s) 1043
AccI GTMKAC 1 cut(s) 548
AccII CGCG 1 cut(s) 1032
AciI CCGC 2 cut(s) 1030, 1444
AclWI GGATC 3 cut(s) 497, 1103, 1498
AcoI YGGCCR 2 cut(s) 177, 411
AcsI RAATTY 5 cut(s) 52, 65, 464, 689, 1382
AcuI CTGAAG 2 cut(s) 762, 1125
AcvI CACGTG 1 cut(s) 1258
AcyI GRCGYC 1 cut(s) 111
AfaI GTAC 3 cut(s) 904, 1035, 1263
AfiI CCNNNNNNNGG 2 cut(s) 1043, 1289
AflIII ACRYGT 3 cut(s) 784, 1255, 1456
AgsI TTSAA 5 cut(s) 470, 683, 971, 989, 1454
AjnI CCWGG 2 cut(s) 1072, 1246
AluBI AGCT 9 cut(s) 138, 255, 272, 485, 724, 746, 1093, 1161, 1172
AluI AGCT 9 cut(s) 138, 255, 272, 485, 724, 746, 1093, 1161, 1172
Alw26I GTCTC 4 cut(s) 333, 485, 732, 1305
AlwI GGATC 3 cut(s) 497, 1103, 1498
AlwNI CAGNNNCTG 1 cut(s) 1043
AoxI GGCC 6 cut(s) 145, 177, 411, 828, 919, 1055
ApeKI GCWGC 3 cut(s) 252, 324, 746
ApoI RAATTY 5 cut(s) 52, 65, 464, 689, 1382
ArsI GACNNNNNNTTYG 2 cut(s) 755, 787
AspLEI GCGC 3 cut(s) 129, 329, 374
AspS9I GGNCC 2 cut(s) 4, 1055
AsuC2I CCSGG 1 cut(s) 1210
AsuHPI GGTGA 3 cut(s) 229, 569, 1295
AsuII TTCGAA 1 cut(s) 77
AvaII GGWCC 1 cut(s) 4
BalI TGGCCA 1 cut(s) 413
BanI GGYRCC 1 cut(s) 1195
BarI GAAGNNNNNNTAC 2 cut(s) 1212, 1244
BbrPI CACGTG 1 cut(s) 1258
BbsI GAAGAC 1 cut(s) 1220
BbvI GCAGC 3 cut(s) 264, 311, 733
BccI CCATC 4 cut(s) 432, 800, 1004, 1121
BciT130I CCWGG 2 cut(s) 1074, 1248
BclI TGATCA 1 cut(s) 694
BcnI CCSGG 1 cut(s) 1210
BcoDI GTCTC 4 cut(s) 333, 485, 732, 1305
BfaI CTAG 4 cut(s) 143, 750, 1122, 1298
BfuAI ACCTGC 1 cut(s) 995
BglII AGATCT 1 cut(s) 675
BisI GCNGC 3 cut(s) 253, 325, 747
BlpI GCTNAGC 1 cut(s) 1517
BlsI GCNGC 3 cut(s) 254, 326, 748
BmcAI AGTACT 1 cut(s) 904
Bme1390I CCNGG 3 cut(s) 1074, 1210, 1248
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 2 cut(s) 4, 1055
BmiI GGNNCC 2 cut(s) 265, 1197
BmrFI CCNGG 3 cut(s) 1074, 1210, 1248
BmsI GCATC 4 cut(s) 421, 550, 598, 746
BpiI GAAGAC 1 cut(s) 1220
BpmI CTGGAG 3 cut(s) 631, 1038, 1269
Bpu1102I GCTNAGC 1 cut(s) 1517
Bpu14I TTCGAA 1 cut(s) 77
BpuEI CTTGAG 1 cut(s) 1152
BpuMI CCSGG 1 cut(s) 1210
BsaAI YACGTR 1 cut(s) 1258
BsaHI GRCGYC 1 cut(s) 111
BsaI GGTCTC 1 cut(s) 1305
BsaJI CCNNGG 4 cut(s) 222, 1058, 1306, 1527
BsaWI WCCGGW 1 cut(s) 331
BsaXI ACNNNNNCTCC 6 cut(s) 865, 895, 1242, 1272, 1403, 1433
Bsc4I CCNNNNNNNGG 2 cut(s) 1043, 1289
Bse1I ACTGG 3 cut(s) 648, 1336, 1439
Bse3DI GCAATG 1 cut(s) 494
BseBI CCWGG 2 cut(s) 1074, 1248
BseDI CCNNGG 4 cut(s) 222, 1058, 1306, 1527
BseGI GGATG 3 cut(s) 424, 761, 996
BseLI CCNNNNNNNGG 2 cut(s) 1043, 1289
BseMI GCAATG 1 cut(s) 494
BseMII CTCAG 2 cut(s) 684, 1508
BseNI ACTGG 3 cut(s) 648, 1336, 1439
BseRI GAGGAG 1 cut(s) 1409
BseXI GCAGC 3 cut(s) 264, 311, 733
BseYI CCCAGC 2 cut(s) 1000, 1043
BsgI GTGCAG 2 cut(s) 765, 1152
Bsh1236I CGCG 1 cut(s) 1032
BshFI GGCC 6 cut(s) 147, 179, 413, 830, 921, 1057
BshNI GGYRCC 1 cut(s) 1195
BsiSI CCGG 4 cut(s) 154, 180, 332, 1209
BslFI GGGAC 1 cut(s) 455
BslI CCNNNNNNNGG 2 cut(s) 1043, 1289
BsmAI GTCTC 4 cut(s) 333, 485, 732, 1305
BsmFI GGGAC 1 cut(s) 455
BsnI GGCC 6 cut(s) 147, 179, 413, 830, 921, 1057
Bso31I GGTCTC 1 cut(s) 1305
Bsp119I TTCGAA 1 cut(s) 77
Bsp143I GATC 5 cut(s) 502, 675, 694, 1108, 1503
Bsp1720I GCTNAGC 1 cut(s) 1517
Bsp19I CCATGG 1 cut(s) 1306
BspACI CCGC 2 cut(s) 1030, 1444
BspANI GGCC 6 cut(s) 147, 179, 413, 830, 921, 1057
BspCNI CTCAG 2 cut(s) 683, 1509
BspFNI CGCG 1 cut(s) 1032
BspLI GGNNCC 2 cut(s) 265, 1197
BspMI ACCTGC 1 cut(s) 995
BspPI GGATC 3 cut(s) 497, 1103, 1498
BspQI GCTCTTC 1 cut(s) 262
BspT104I TTCGAA 1 cut(s) 77
BspT107I GGYRCC 1 cut(s) 1195
BspTNI GGTCTC 1 cut(s) 1305
BsrDI GCAATG 1 cut(s) 494
BsrI ACTGG 3 cut(s) 648, 1336, 1439
BssECI CCNNGG 4 cut(s) 222, 1058, 1306, 1527
BssMI GATC 5 cut(s) 502, 675, 694, 1108, 1503
BssNAI GTATAC 1 cut(s) 549
BssNI GRCGYC 1 cut(s) 111
BssT1I CCWWGG 1 cut(s) 1306
Bst1107I GTATAC 1 cut(s) 549
Bst2UI CCWGG 2 cut(s) 1074, 1248
Bst4CI ACNGT 1 cut(s) 8
Bst6I CTCTTC 1 cut(s) 262
BstACI GRCGYC 1 cut(s) 111
BstBAI YACGTR 1 cut(s) 1258
BstBI TTCGAA 1 cut(s) 77
BstC8I GCNNGC 4 cut(s) 140, 376, 407, 411
BstDEI CTNAG 3 cut(s) 670, 1265, 1517
BstDSI CCRYGG 3 cut(s) 1058, 1306, 1527
BstEII GGTNACC 1 cut(s) 217
BstF5I GGATG 3 cut(s) 424, 761, 996
BstFNI CGCG 1 cut(s) 1032
BstHHI GCGC 3 cut(s) 129, 329, 374
BstKTI GATC 5 cut(s) 505, 678, 697, 1111, 1506
BstMAI GTCTC 4 cut(s) 333, 485, 732, 1305
BstMBI GATC 5 cut(s) 502, 675, 694, 1108, 1503
BstMWI GCNNNNNNNGC 4 cut(s) 135, 144, 278, 560
BstNI CCWGG 2 cut(s) 1074, 1248
BstNSI RCATGY 3 cut(s) 788, 900, 1370
BstPI GGTNACC 1 cut(s) 217
BstSCI CCNGG 3 cut(s) 1072, 1208, 1246
BstUI CGCG 1 cut(s) 1032
BstV1I GCAGC 3 cut(s) 264, 311, 733
BstV2I GAAGAC 1 cut(s) 1220
BstX2I RGATCY 3 cut(s) 502, 675, 1108
BstYI RGATCY 3 cut(s) 502, 675, 1108
BstZ17I GTATAC 1 cut(s) 549
BsuRI GGCC 6 cut(s) 147, 179, 413, 830, 921, 1057
BtgI CCRYGG 3 cut(s) 1058, 1306, 1527
BtsCI GGATG 3 cut(s) 424, 761, 996
BtsI GCAGTG 1 cut(s) 777
BtsIMutI CAGTG 1 cut(s) 777
BveI ACCTGC 1 cut(s) 995
Cac8I GCNNGC 4 cut(s) 140, 376, 407, 411
CaiI CAGNNNCTG 1 cut(s) 1043
CfoI GCGC 3 cut(s) 129, 329, 374
Cfr13I GGNCC 2 cut(s) 4, 1055
CseI GACGC 2 cut(s) 119, 300
Csp6I GTAC 3 cut(s) 903, 1034, 1262
CviQI GTAC 3 cut(s) 903, 1034, 1262
DdeI CTNAG 3 cut(s) 670, 1265, 1517
DpnI GATC 5 cut(s) 504, 677, 696, 1110, 1505
DpnII GATC 5 cut(s) 502, 675, 694, 1108, 1503
DraI TTTAAA 1 cut(s) 634
EaeI YGGCCR 2 cut(s) 177, 411
Eam1104I CTCTTC 1 cut(s) 262
EarI CTCTTC 1 cut(s) 262
Eco130I CCWWGG 1 cut(s) 1306
Eco147I AGGCCT 1 cut(s) 147
Eco31I GGTCTC 1 cut(s) 1305
Eco47I GGWCC 1 cut(s) 4
Eco57I CTGAAG 2 cut(s) 762, 1125
Eco72I CACGTG 1 cut(s) 1258
Eco91I GGTNACC 1 cut(s) 217
EcoO65I GGTNACC 1 cut(s) 217
EcoRII CCWGG 2 cut(s) 1072, 1246
EcoT14I CCWWGG 1 cut(s) 1306
ErhI CCWWGG 1 cut(s) 1306
FalI AAGNNNNNCTT 4 cut(s) 469, 501, 1161, 1193
FaqI GGGAC 1 cut(s) 455
FbaI TGATCA 1 cut(s) 694
FblI GTMKAC 1 cut(s) 548
Fnu4HI GCNGC 3 cut(s) 253, 325, 747
FokI GGATG 3 cut(s) 411, 768, 983
Fsp4HI GCNGC 3 cut(s) 253, 325, 747
FspBI CTAG 4 cut(s) 143, 750, 1122, 1298
FspI TGCGCA 2 cut(s) 128, 328
GlaI GCGC 3 cut(s) 128, 328, 373
GluI GCNGC 3 cut(s) 253, 325, 747
GsaI CCCAGC 2 cut(s) 1004, 1047
GsuI CTGGAG 3 cut(s) 631, 1038, 1269
HaeIII GGCC 6 cut(s) 147, 179, 413, 830, 921, 1057
HapII CCGG 4 cut(s) 154, 180, 332, 1209
HgaI GACGC 2 cut(s) 119, 300
HhaI GCGC 3 cut(s) 129, 329, 374
Hin1I GRCGYC 1 cut(s) 111
Hin6I GCGC 3 cut(s) 127, 327, 372
HinP1I GCGC 3 cut(s) 127, 327, 372
HincII GTYRAC 1 cut(s) 1364
HindII GTYRAC 1 cut(s) 1364
HindIII AAGCTT 1 cut(s) 483
HpaII CCGG 4 cut(s) 154, 180, 332, 1209
HphI GGTGA 3 cut(s) 229, 569, 1295
Hpy166II GTNNAC 5 cut(s) 549, 888, 1147, 1303, 1364
Hpy188I TCNGA 7 cut(s) 20, 118, 369, 673, 742, 1344, 1470
Hpy188III TCNNGA 7 cut(s) 33, 58, 428, 470, 506, 1017, 1489
Hpy8I GTNNAC 5 cut(s) 549, 888, 1147, 1303, 1364
Hpy99I CGWCG 1 cut(s) 12
HpyAV CCTTC 6 cut(s) 388, 459, 560, 608, 965, 1384
HpyCH4III ACNGT 1 cut(s) 8
HpyCH4IV ACGT 3 cut(s) 1257, 1360, 1456
HpyF10VI GCNNNNNNNGC 4 cut(s) 135, 144, 278, 560
HpyF3I CTNAG 3 cut(s) 670, 1265, 1517
HpySE526I ACGT 3 cut(s) 1257, 1360, 1456
Hsp92I GRCGYC 1 cut(s) 111
HspAI GCGC 3 cut(s) 127, 327, 372
Ksp22I TGATCA 1 cut(s) 694
Kzo9I GATC 5 cut(s) 502, 675, 694, 1108, 1503
LguI GCTCTTC 1 cut(s) 262
LmnI GCTCC 2 cut(s) 369, 721
Lsp1109I GCAGC 3 cut(s) 264, 311, 733
LweI GCATC 4 cut(s) 421, 550, 598, 746
MaeI CTAG 4 cut(s) 143, 750, 1122, 1298
MaeII ACGT 3 cut(s) 1257, 1360, 1456
MaeIII GTNAC 4 cut(s) 217, 775, 871, 991
MalI GATC 5 cut(s) 504, 677, 696, 1110, 1505
MboI GATC 5 cut(s) 502, 675, 694, 1108, 1503
MboII GAAGA 7 cut(s) 16, 31, 34, 249, 1118, 1225, 1391
MflI RGATCY 3 cut(s) 502, 675, 1108
MlsI TGGCCA 1 cut(s) 413
MluNI TGGCCA 1 cut(s) 413
MlyI GAGTC 2 cut(s) 1142, 1341
MmeI TCCRAC 2 cut(s) 1367, 1446
Mox20I TGGCCA 1 cut(s) 413
MscI TGGCCA 1 cut(s) 413
MseI TTAA 4 cut(s) 390, 633, 1089, 1205
MslI CAYNNNNRTG 3 cut(s) 429, 716, 895
Msp20I TGGCCA 1 cut(s) 413
MspA1I CMGCKG 1 cut(s) 1444
MspI CCGG 4 cut(s) 154, 180, 332, 1209
MspR9I CCNGG 3 cut(s) 1074, 1210, 1248
MvaI CCWGG 2 cut(s) 1074, 1248
MvnI CGCG 1 cut(s) 1032
MwoI GCNNNNNNNGC 4 cut(s) 135, 144, 278, 560
NciI CCSGG 1 cut(s) 1210
NcoI CCATGG 1 cut(s) 1306
NdeII GATC 5 cut(s) 502, 675, 694, 1108, 1503
NlaIV GGNNCC 2 cut(s) 265, 1197
NmuCI GTSAC 2 cut(s) 217, 775
NsbI TGCGCA 2 cut(s) 128, 328
NspI RCATGY 3 cut(s) 788, 900, 1370
NspV TTCGAA 1 cut(s) 77
PaqCI CACCTGC 1 cut(s) 995
PceI AGGCCT 1 cut(s) 147
PciI ACATGT 1 cut(s) 784
PciSI GCTCTTC 1 cut(s) 262
PcsI WCGNNNNNNNCGW 1 cut(s) 16
PfeI GAWTC 9 cut(s) 21, 36, 74, 89, 185, 295, 766, 797, 1013
PflMI CCANNNNNTGG 1 cut(s) 1043
PkrI GCNGC 3 cut(s) 254, 326, 748
PleI GAGTC 2 cut(s) 1142, 1340
PmaCI CACGTG 1 cut(s) 1258
PmlI CACGTG 1 cut(s) 1258
PpsI GAGTC 2 cut(s) 1142, 1340
Ppu21I YACGTR 1 cut(s) 1258
PscI ACATGT 1 cut(s) 784
PsiI TTATAA 1 cut(s) 456
Psp6I CCWGG 2 cut(s) 1072, 1246
PspCI CACGTG 1 cut(s) 1258
PspEI GGTNACC 1 cut(s) 217
PspFI CCCAGC 2 cut(s) 1000, 1043
PspGI CCWGG 2 cut(s) 1072, 1246
PspN4I GGNNCC 2 cut(s) 265, 1197
PspPI GGNCC 2 cut(s) 4, 1055
PsrI GAACNNNNNNTAC 2 cut(s) 1245, 1277
PstNI CAGNNNCTG 1 cut(s) 1043
PsuI RGATCY 3 cut(s) 502, 675, 1108
RsaI GTAC 3 cut(s) 904, 1035, 1263
RsaNI GTAC 3 cut(s) 903, 1034, 1262
RseI CAYNNNNRTG 3 cut(s) 429, 716, 895
SapI GCTCTTC 1 cut(s) 262
SaqAI TTAA 4 cut(s) 390, 633, 1089, 1205
SatI GCNGC 3 cut(s) 253, 325, 747
Sau3AI GATC 5 cut(s) 502, 675, 694, 1108, 1503
Sau96I GGNCC 2 cut(s) 4, 1055
ScaI AGTACT 1 cut(s) 904
SchI GAGTC 2 cut(s) 1142, 1341
ScrFI CCNGG 3 cut(s) 1074, 1210, 1248
SfaNI GCATC 4 cut(s) 421, 550, 598, 746
SfuI TTCGAA 1 cut(s) 77
SinI GGWCC 1 cut(s) 4
SmiMI CAYNNNNRTG 3 cut(s) 429, 716, 895
SmlI CTYRAG 1 cut(s) 1167
SmoI CTYRAG 1 cut(s) 1167
SseBI AGGCCT 1 cut(s) 147
SsiI CCGC 2 cut(s) 1030, 1444
SspI AATATT 1 cut(s) 666
SspMI CTAG 4 cut(s) 143, 750, 1122, 1298
StuI AGGCCT 1 cut(s) 147
StyD4I CCNGG 3 cut(s) 1072, 1208, 1246
StyI CCWWGG 1 cut(s) 1306
TaaI ACNGT 1 cut(s) 8
TaiI ACGT 3 cut(s) 1260, 1363, 1459
TaqI TCGA 5 cut(s) 34, 77, 235, 1330, 1490
TaqII GACCGA 1 cut(s) 236
TatI WGTACW 1 cut(s) 902
TfiI GAWTC 9 cut(s) 21, 36, 74, 89, 185, 295, 766, 797, 1013
Tru1I TTAA 4 cut(s) 390, 633, 1089, 1205
Tru9I TTAA 4 cut(s) 390, 633, 1089, 1205
TscAI CASTG 1 cut(s) 784
TseFI GTSAC 2 cut(s) 217, 775
TseI GCWGC 3 cut(s) 252, 324, 746
Tsp45I GTSAC 2 cut(s) 217, 775
TspDTI ATGAA 8 cut(s) 16, 185, 545, 642, 647, 702, 1371, 1394
TspGWI ACGGA 3 cut(s) 217, 256, 873
TspRI CASTG 1 cut(s) 784
Van91I CCANNNNNTGG 1 cut(s) 1043
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 5 cut(s) 52, 65, 464, 689, 1382
XceI RCATGY 3 cut(s) 788, 900, 1370
XmiI GTMKAC 1 cut(s) 548
XspI CTAG 4 cut(s) 143, 750, 1122, 1298
ZrmI AGTACT 1 cut(s) 904
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.