AT1G32760

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0004963
Physical Location & Seq
Forward (+)
11858080 .. 11859468
1389 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G32760.1

Sequence Viewer

Length: 945 bp
ATGGGTGGTTGCGTCTCCTCCAACCTCCTTACTCCGACCGATGACAGCAGCTTCTCTCACCTCACCAGCTCCTCCTTAAGCCAACATTTCGTCAAGCTAACTTCCACCACTTACGGTCTTCTCAATCTCGACTCTTCTTCACCTTCTCCTCCGTCTCCTTCCTCCTCCTCCTCCGCCAAATCCGTTATCACGCCAATGACTCCGCCTGAGAGATTCACTATCAACGGTAAGGAGGCGGCGATGATGATGGTTAAGTCTGAGCCGACGACGGAGGTTATTAACTTCTGGGAGCTAATGTCAGGTTTAGACGGCGATACTTGTCGATTCTCTCCGATTCCGGTGAAATGTAATGGATTTTCCGGCGGATTAAAGAAAGAGAACTCCGATCCTAATTTGAAAAACCCTAACGATTACGAGGTTTTGAAACCGTTAGATCCGAAATTAGCGGAGGAATCTGAGAGGTTATGTGACGGCGGAGAGAATCGCGTTGTGATTTATACGACGTCGTTGCGCGGTGTTCGACGGACGTTTGAGGCGTGTAACGCCGTGAGAGCTGCGATTGAGAGTTTTGGTGTAGTGGTTTGTGAGAGAGATGTGTCAATGGATAGAGGATTTAGAGAAGAGTTATCCAATCTAATGGCGGTAGAATCGACGGCGGCGGTGTTGCCGCCTCGGGTTTTTGTGAAGGGGAAGTACATTGGTGGAGCAGAGGAAGTGATGAGATTGGTGGAAGAAGGATTGCTTGGTGAATTGCTTAAAGAGATTCCGAGGAAGAAAGATCGGTGTGGCGGCGGTTGCGGTGGTTGCGGCGGATTAGCGTTTTTGCCGTGTTCGGGTTGTAATGGAAGCTGTAAAGTGGTGGAAGGATGGGGGAATGATGCAGTGGTGGTGAAGTGTAAGGAGTGTAATGAGAATGGTCTTGTTCGTTGTCCAATATGCAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

314

Amino Acids

33.62

Weight (kDa)

5.37

Isoelectric Point (pI)

41.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 163 - 233 6.4e-10 Glutaredoxin
GRXCR1-2_C PF23733 266 - 314 9.1e-16 GRXCR1/2, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 506
AccII CGCG 2 cut(s) 486, 513
AclWI GGATC 2 cut(s) 380, 428
AcyI GRCGYC 1 cut(s) 503
AfaI GTAC 1 cut(s) 695
AfiI CCNNNNNNNGG 1 cut(s) 833
AflII CTTAAG 1 cut(s) 76
AgsI TTSAA 2 cut(s) 397, 424
AjuI GAANNNNNNNTTGG 2 cut(s) 726, 758
AluBI AGCT 7 cut(s) 51, 69, 97, 292, 554, 849, 942
AluI AGCT 7 cut(s) 51, 69, 97, 292, 554, 849, 942
Alw26I GTCTC 2 cut(s) 19, 159
AlwI GGATC 2 cut(s) 380, 428
Ama87I CYCGRG 1 cut(s) 672
ApeKI GCWGC 3 cut(s) 48, 554, 939
AspLEI GCGC 1 cut(s) 513
AsuHPI GGTGA 6 cut(s) 50, 55, 132, 352, 758, 901
AvaI CYCGRG 1 cut(s) 672
BarI GAAGNNNNNNTAC 2 cut(s) 677, 709
BbsI GAAGAC 1 cut(s) 110
BbvI GCAGC 2 cut(s) 60, 541
BccI CCATC 2 cut(s) 241, 861
BceAI ACGGC 5 cut(s) 325, 487, 530, 669, 811
BcgI CGANNNNNNTGC 2 cut(s) 490, 524
BcoDI GTCTC 2 cut(s) 19, 159
BfrI CTTAAG 1 cut(s) 76
BisI GCNGC 8 cut(s) 49, 237, 555, 657, 668, 790, 808, 940
BlsI GCNGC 8 cut(s) 50, 238, 556, 658, 669, 791, 809, 941
BmeT110I CYCGRG 1 cut(s) 672
BmsI GCATC 1 cut(s) 868
BpiI GAAGAC 1 cut(s) 110
BsaHI GRCGYC 1 cut(s) 503
BsaJI CCNNGG 2 cut(s) 671, 767
BsaWI WCCGGW 1 cut(s) 337
BsaXI ACNNNNNCTCC 2 cut(s) 281, 311
Bsc4I CCNNNNNNNGG 1 cut(s) 833
BseDI CCNNGG 2 cut(s) 671, 767
BseGI GGATG 1 cut(s) 872
BseLI CCNNNNNNNGG 1 cut(s) 833
BseMII CTCAG 3 cut(s) 198, 249, 447
BseRI GAGGAG 6 cut(s) 7, 61, 138, 154, 157, 160
BseXI GCAGC 2 cut(s) 60, 541
Bsh1236I CGCG 2 cut(s) 486, 513
Bsh1285I CGRYCG 1 cut(s) 39
BsiEI CGRYCG 1 cut(s) 39
BsiHKCI CYCGRG 1 cut(s) 672
BsiSI CCGG 2 cut(s) 338, 360
BslI CCNNNNNNNGG 1 cut(s) 833
BsmAI GTCTC 2 cut(s) 19, 159
BsmBI CGTCTC 2 cut(s) 19, 159
BsoBI CYCGRG 1 cut(s) 672
Bsp143I GATC 3 cut(s) 385, 433, 778
BspCNI CTCAG 3 cut(s) 199, 250, 448
BspFNI CGCG 2 cut(s) 486, 513
BspPI GGATC 2 cut(s) 380, 428
BspTI CTTAAG 1 cut(s) 76
BssECI CCNNGG 2 cut(s) 671, 767
BssMI GATC 3 cut(s) 385, 433, 778
BssNI GRCGYC 1 cut(s) 503
Bst4CI ACNGT 3 cut(s) 116, 227, 429
Bst6I CTCTTC 2 cut(s) 139, 615
BstACI GRCGYC 1 cut(s) 503
BstAFI CTTAAG 1 cut(s) 76
BstDEI CTNAG 3 cut(s) 207, 258, 456
BstF5I GGATG 1 cut(s) 872
BstFNI CGCG 2 cut(s) 486, 513
BstHHI GCGC 1 cut(s) 513
BstKTI GATC 3 cut(s) 388, 436, 781
BstMAI GTCTC 2 cut(s) 19, 159
BstMBI GATC 3 cut(s) 385, 433, 778
BstMCI CGRYCG 1 cut(s) 39
BstMWI GCNNNNNNNGC 4 cut(s) 542, 551, 795, 804
BstUI CGCG 2 cut(s) 486, 513
BstV1I GCAGC 2 cut(s) 60, 541
BstV2I GAAGAC 1 cut(s) 110
BstX2I RGATCY 1 cut(s) 433
BstXI CCANNNNNNTGG 1 cut(s) 637
BstYI RGATCY 1 cut(s) 433
BtgZI GCGATG 1 cut(s) 254
BtsCI GGATG 1 cut(s) 872
BtsI GCAGTG 1 cut(s) 888
BtsIMutI CAGTG 1 cut(s) 888
CfoI GCGC 1 cut(s) 513
Csp6I GTAC 1 cut(s) 694
CviJI RGCY 9 cut(s) 51, 69, 81, 97, 262, 292, 554, 849, 942
CviKI_1 RGCY 9 cut(s) 51, 69, 81, 97, 262, 292, 554, 849, 942
CviQI GTAC 1 cut(s) 694
DdeI CTNAG 3 cut(s) 207, 258, 456
DpnI GATC 3 cut(s) 387, 435, 780
DpnII GATC 3 cut(s) 385, 433, 778
Eam1104I CTCTTC 2 cut(s) 139, 615
EarI CTCTTC 2 cut(s) 139, 615
EciI GGCGGA 5 cut(s) 163, 192, 378, 489, 825
Eco88I CYCGRG 1 cut(s) 672
Esp3I CGTCTC 2 cut(s) 19, 159
FaiI YATR 3 cut(s) 466, 498, 937
FalI AAGNNNNNCTT 2 cut(s) 726, 758
Fnu4HI GCNGC 8 cut(s) 49, 237, 555, 657, 668, 790, 808, 940
FokI GGATG 1 cut(s) 879
Fsp4HI GCNGC 8 cut(s) 49, 237, 555, 657, 668, 790, 808, 940
GlaI GCGC 1 cut(s) 512
GluI GCNGC 8 cut(s) 49, 237, 555, 657, 668, 790, 808, 940
HapII CCGG 2 cut(s) 338, 360
HhaI GCGC 1 cut(s) 513
Hin1I GRCGYC 1 cut(s) 503
Hin6I GCGC 1 cut(s) 511
HinP1I GCGC 1 cut(s) 511
HinfI GANTC 9 cut(s) 131, 199, 213, 324, 334, 452, 481, 647, 763
HpaII CCGG 2 cut(s) 338, 360
HphI GGTGA 6 cut(s) 50, 55, 132, 352, 758, 901
Hpy188I TCNGA 7 cut(s) 36, 259, 333, 385, 438, 457, 768
Hpy188III TCNNGA 1 cut(s) 128
Hpy99I CGWCG 6 cut(s) 268, 271, 505, 508, 525, 655
HpyAV CCTTC 5 cut(s) 153, 168, 679, 728, 857
HpyCH4III ACNGT 3 cut(s) 116, 227, 429
HpyCH4IV ACGT 2 cut(s) 503, 527
HpyCH4V TGCA 2 cut(s) 881, 939
HpyF10VI GCNNNNNNNGC 4 cut(s) 542, 551, 795, 804
HpyF3I CTNAG 3 cut(s) 207, 258, 456
HpySE526I ACGT 2 cut(s) 503, 527
Hsp92I GRCGYC 1 cut(s) 503
HspAI GCGC 1 cut(s) 511
Kzo9I GATC 3 cut(s) 385, 433, 778
LmnI GCTCC 3 cut(s) 74, 289, 704
LpnPI CCDG 6 cut(s) 79, 219, 271, 285, 351, 373
Lsp1109I GCAGC 2 cut(s) 60, 541
LweI GCATC 1 cut(s) 868
MaeII ACGT 2 cut(s) 503, 527
MaeIII GTNAC 2 cut(s) 467, 539
MalI GATC 3 cut(s) 387, 435, 780
MboI GATC 3 cut(s) 385, 433, 778
MboII GAAGA 6 cut(s) 110, 126, 129, 632, 743, 784
MflI RGATCY 1 cut(s) 433
MluCI AATT 3 cut(s) 391, 440, 749
MlyI GAGTC 2 cut(s) 125, 193
MmeI TCCRAC 2 cut(s) 45, 59
MseI TTAA 5 cut(s) 77, 252, 279, 368, 756
MslI CAYNNNNRTG 1 cut(s) 194
MspCI CTTAAG 1 cut(s) 76
MspI CCGG 2 cut(s) 338, 360
MvnI CGCG 2 cut(s) 486, 513
MwoI GCNNNNNNNGC 4 cut(s) 542, 551, 795, 804
NdeII GATC 3 cut(s) 385, 433, 778
NmuCI GTSAC 1 cut(s) 467
PcsI WCGNNNNNNNCGW 1 cut(s) 533
PfeI GAWTC 7 cut(s) 213, 324, 334, 452, 481, 647, 763
PkrI GCNGC 8 cut(s) 50, 238, 556, 658, 669, 791, 809, 941
PleI GAGTC 2 cut(s) 125, 193
PpsI GAGTC 2 cut(s) 125, 193
PsuI RGATCY 1 cut(s) 433
RsaI GTAC 1 cut(s) 695
RsaNI GTAC 1 cut(s) 694
RseI CAYNNNNRTG 1 cut(s) 194
SaqAI TTAA 5 cut(s) 77, 252, 279, 368, 756
SatI GCNGC 8 cut(s) 49, 237, 555, 657, 668, 790, 808, 940
Sau3AI GATC 3 cut(s) 385, 433, 778
SchI GAGTC 2 cut(s) 125, 193
SfaNI GCATC 1 cut(s) 868
SmiMI CAYNNNNRTG 1 cut(s) 194
SmlI CTYRAG 1 cut(s) 76
SmoI CTYRAG 1 cut(s) 76
Sse9I AATT 3 cut(s) 391, 440, 749
TaaI ACNGT 3 cut(s) 116, 227, 429
TaiI ACGT 2 cut(s) 506, 530
TaqI TCGA 4 cut(s) 129, 322, 520, 650
TaqII GACCGA 1 cut(s) 53
TasI AATT 3 cut(s) 391, 440, 749
TatI WGTACW 1 cut(s) 693
TauI GCSGC 5 cut(s) 239, 659, 670, 792, 810
TfiI GAWTC 7 cut(s) 213, 324, 334, 452, 481, 647, 763
Tru1I TTAA 5 cut(s) 77, 252, 279, 368, 756
Tru9I TTAA 5 cut(s) 77, 252, 279, 368, 756
TscAI CASTG 1 cut(s) 888
TseFI GTSAC 1 cut(s) 467
TseI GCWGC 3 cut(s) 48, 554, 939
Tsp45I GTSAC 1 cut(s) 467
TspGWI ACGGA 4 cut(s) 141, 172, 284, 538
TspRI CASTG 1 cut(s) 888
Vha464I CTTAAG 1 cut(s) 76
ZraI GACGTC 1 cut(s) 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.