Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004963

Physical Location & Seq

Genomic Coordinates Reverse (-)

60282031 .. 60284176

Gene Structure 2146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0481600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2109 bp

ATGGCACAAGTCGAGAAGATGAGGAATGTACCTCTTTTCATGCTTCTAGTAATACTTATGGTTCAGCTTTCCTCTAACATCTGCGTTATAGCAGAAGAGAGAGATCAACAAATGAAGGAAACTTACATCATTCAGACGGACAAGTCAAAAATACCAGCAAGCTTTGACAATGACCATTACCATTGGTATGGCTCATCTTTGAAAGCAGTGTCGGCTTCAGCAGACATGCTTTACATGTACCAAAATGTAGTTCACGGCTTCTCCACCAGGCTTACGAGTGAGGAAGCTGAGCTGCTTGAAAAGCAGTCAGGAATTCTTTCTGTTCTTCCTGAGATGAGATATGAGCTTCATACAACTCGGACACTGGAGTTTCTTCGATTAACAGGACAATATGAAGCTGTCTTCCCAGCATCAGGCAATGTGAGTAAGGTGGTCATCGGACTTGTAGACACTGGTGTATGGCCTGAGAGCAAAAGCTACAATGACAAGGGTCTTGCACCTGTGCCAAGGAGCTGGAAAGGGCAGTGCGAGGAGGTTCAGGACTTCAACTCCTTAAGCTGCAACAGGAAACTGATTGACGCCAGGTTTTTCTCAAAAGGGTATGAAGCAGCACTTGGACCCATGAATGAAAAGTTAGAATCAAGATCACCACGAGATGATGACGGCCATGGAACTCACACCTCCAGCATTGCAGCTGGATCCCCTGTTCCAGGAGCTAGCCTCTTTGGTTACACGTCAGGGACAGCACGGGGAATGGCTGCACAAGCTCGTGTTGCAACATATAAGGCATGCTGGCTTGGAGGTTGTTTCGGCTCTGATGTTCTAGCCGCAATGGACAAGGCTATTAAAGATGCACAATACGAGGATTTCTCCACAGACATTGTTGCTATTGGAGCTTTTTCTGCCATGGCCAAGGGAGTATTTGTGTCATGTTCAGCCGGAAATGATGGGCCAATTTCCTATACCTCATCCAACAATGCACCTTGGATAACCACTGTGGGTGCTGGAACACTAGACCGGGACTTCCCAGCTTATGTTAGTCTTGGAAATGGAAAGAAATACAGAGGTATAGCACTTGACCGCGGTATAGTATCATTATCTAGTGGATTACATCCCCTTGTATATGCTTCTAATGCAAGTAACTCCACAAGTGGTGATCAATGCTCTCCTAACAGTTTGATTCCTCAGATGGTTGCTGGGAAAATTGTGGTATGCGATCGGGGAGGAAGTAGGGTCAGAAAGAGTGTGGTGGTAAAAAAGGCTGGTGGGGTAGGGATGATTATGGCAAACATTGAAGGTTATGGAGAAGAACTTGTAGCCGACCCATATCTCTTGCCAACTGCATTTGTTGGCAAGAAAGCTGGTGATGCAATAAGAAGATATATTGCCTCGCATGCTAATCCGGAAGCCACATTGGTTTTCAGAAAGACTCAGTTGGGTATCGAACCCTCACCAGTGGTGGCAGCATTCAGCTCTAGAGGACCCAATCCAGTCGCTACATCACTACTCAAGCCAGACTTGATAGCACCAGGAGTTAATATTCTAGCTGGGTGGACTGGTGCAGATGGACCAACTGGACTACCTGAAGACAAAAAGAGGGTTAGCTACAACATCATTTCAGGTACATCCATGTCATGCCCTCATGTGAGCGGGCTTGCCGCCCTTCTCAAGGCCGCTCACCCAAAATGGAGCCCTGCTGCCATTAAATCTGCTCTCATGACCACATCCTATACAAGAAGAAATGGAAAACCAATCAAAGATGTTGCTACTGGAAAGCCTGCAACACCATTTGATTATGGAGCTGGGCACGTGAACCCAGTTGGAGCCCTTGACCCTGGCCTTATTTATGATCTAGCTGTGGAGGACTACCTAGGCTTCCTCTGTGCCATGAATTACACGACGAAAGATATCAAGAAACTCACTCACAGAGACTCCACCTGTGACTCAAGAAAGAAATACAGAGTTCGAGATTTCAACTACCCATCTCTTGCTGCTACCAGTCGGGGGTGGATCTGTCAATTACACAAGGACTCTAACCAATGTGGGTACCCCAGCAAGATACAAGGTCCGAGTGACTACAAAGTCCCCATTAGTGAAGATCTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glutaredoxin

Protein Analysis

702

Amino Acids

75.56

Weight (kDa)

8.47

Isoelectric Point (pI)

33.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I9	PF05922	41 - 117	5.4e-13	Peptidase inhibitor I9
Peptidase_S8	PF00082	143 - 602	1e-35	Subtilase family
PA	PF02225	372 - 458	4.9e-11	PA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32760 AT4G10630
fragaria_vesca	FvH4_5g10700
malus_domestica	MD06G1121200.v1.1 MD09G1197100.v1.1 MD14G1137800.v1.1
prunus_persica	Prupe.5G131800_v2.0.a1
pyrus_communis	pycom06g11250 pycom14g11300
rosa_chinensis	RchiOBHm_Chr1g0342161 RchiOBHm_Chr7g0187441
rosa_laevigata	RLG00000001600 RLG00000004781 RLG00000009467
rosa_multiflora	Rmu_sc0001230.1_g000015 Rmu_sc0003363.1_g000014 Rmu_sc0009146.1_g000005
rosa_roxburghii	Rroxscaffold_3G00267420
rosa_rugosa	Rorug06G0355300 Rorug06G0481600
rosa_samantha	Rh1CG026900 Rh5DG426300 Rh7AG086100 Rh7BG087600 Rh7CG087000 Rh7DG088600 Rh7DG307400 Rh7DG445500
rosa_wichuraiana	Rw2G033920 Rw7G007600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	142, 2081
Acc65I	GGTACC	1 cut(s)	2046
AccB1I	GGYRCC	1 cut(s)	2046
AccBSI	CCGCTC	2 cut(s)	1650, 1676
AccI	GTMKAC	1 cut(s)	447
AccII	CGCG	1 cut(s)	1083
AccIII	TCCGGA	1 cut(s)	1402
AciI	CCGC	6 cut(s)	828, 1081, 1083, 1650, 1659, 1674
AclWI	GGATC	3 cut(s)	693, 706, 2018
AcoI	YGGCCR	2 cut(s)	664, 909
AcsI	RAATTY	1 cut(s)	312
AcuI	CTGAAG	2 cut(s)	201, 1605
AcvI	CACGTG	1 cut(s)	1810
AcyI	GRCGYC	1 cut(s)	579
AfaI	GTAC	4 cut(s)	30, 239, 1624, 2048
AfiI	CCNNNNNNNGG	4 cut(s)	413, 710, 1669, 2004
AflII	CTTAAG	1 cut(s)	553
AflIII	ACRYGT	2 cut(s)	234, 732
AgsI	TTSAA	5 cut(s)	202, 299, 547, 1295, 1975
AjiI	CACGTC	1 cut(s)	735
AjnI	CCWGG	5 cut(s)	266, 581, 709, 1528, 1834
AjuI	GAANNNNNNNTTGG	4 cut(s)	234, 266, 597, 629
AloI	GAACNNNNNNTCC	2 cut(s)	690, 722
Alw26I	GTCTC	1 cut(s)	1923
AlwI	GGATC	3 cut(s)	693, 706, 2018
Aor13HI	TCCGGA	1 cut(s)	1402
AoxI	GGCC	6 cut(s)	461, 664, 909, 950, 1671, 1837
ApeKI	GCWGC	8 cut(s)	292, 558, 608, 692, 758, 1463, 1697, 1991
ApoI	RAATTY	1 cut(s)	312
Asp700I	GAANNNNTTC	1 cut(s)	316
Asp718I	GGTACC	1 cut(s)	2046
AspA2I	CCTAGG	1 cut(s)	1870
AspS9I	GGNCC	5 cut(s)	617, 950, 1481, 1568, 2066
AsuC2I	CCSGG	1 cut(s)	1019
AsuHPI	GGTGA	5 cut(s)	639, 1166, 1376, 1443, 1670
AsuNHI	GCTAGC	1 cut(s)	716
AvaII	GGWCC	4 cut(s)	617, 1481, 1568, 2066
AvrII	CCTAGG	1 cut(s)	1870
BaeGI	GKGCMC	1 cut(s)	1809
BalI	TGGCCA	1 cut(s)	911
BamHI	GGATCC	1 cut(s)	698
BanI	GGYRCC	1 cut(s)	2046
BanII	GRGCYC	2 cut(s)	1694, 1828
BarI	GAAGNNNNNNTAC	2 cut(s)	107, 139
BauI	CACGAG	2 cut(s)	651, 768
BbrPI	CACGTG	1 cut(s)	1810
BbsI	GAAGAC	2 cut(s)	394, 1593
BbvI	GCAGC	8 cut(s)	279, 545, 620, 704, 745, 1475, 1684, 1978
BccI	CCATC	4 cut(s)	941, 1183, 1559, 1990
BceAI	ACGGC	2 cut(s)	271, 679
BciT130I	CCWGG	5 cut(s)	268, 583, 711, 1530, 1836
BclI	TGATCA	1 cut(s)	1156
BcnI	CCSGG	1 cut(s)	1019
BcoDI	GTCTC	1 cut(s)	1923
BfaI	CTAG	9 cut(s)	47, 717, 824, 1013, 1101, 1476, 1544, 1853, 1871
BfrI	CTTAAG	1 cut(s)	553
BglII	AGATCT	1 cut(s)	2098
BlnI	CCTAGG	1 cut(s)	1870
BlpI	GCTNAGC	1 cut(s)	288
Bme1390I	CCNGG	6 cut(s)	268, 583, 711, 1019, 1530, 1836
Bme18I	GGWCC	4 cut(s)	617, 1481, 1568, 2066
BmgBI	CACGTC	1 cut(s)	735
BmgT120I	GGNCC	5 cut(s)	617, 950, 1481, 1568, 2066
BmiI	GGNNCC	6 cut(s)	619, 700, 1483, 1691, 1825, 2048
BmrFI	CCNGG	6 cut(s)	268, 583, 711, 1019, 1530, 1836
BmrI	ACTGGG	1 cut(s)	1811
BmsI	GCATC	3 cut(s)	419, 841, 1357
BmtI	GCTAGC	1 cut(s)	720
BmuI	ACTGGG	1 cut(s)	1811
BoxI	GACNNNNGTC	1 cut(s)	489
BpiI	GAAGAC	2 cut(s)	394, 1593
BplI	GAGNNNNNCTC	4 cut(s)	705, 737, 854, 886
BpmI	CTGGAG	2 cut(s)	386, 667
Bpu1102I	GCTNAGC	1 cut(s)	288
BpuEI	CTTGAG	3 cut(s)	1493, 1652, 1930
BpuMI	CCSGG	1 cut(s)	1019
BsaAI	YACGTR	1 cut(s)	1810
BsaHI	GRCGYC	1 cut(s)	579
BsaJI	CCNNGG	8 cut(s)	506, 667, 906, 912, 983, 1081, 1834, 1870
BsaWI	WCCGGW	1 cut(s)	1402
BsaXI	ACNNNNNCTCC	8 cut(s)	245, 275, 533, 563, 909, 939, 1916, 1946
Bsc4I	CCNNNNNNNGG	4 cut(s)	413, 710, 1669, 2004
Bse1I	ACTGG	9 cut(s)	369, 457, 1454, 1490, 1561, 1579, 1774, 1817, 1998
Bse3DI	GCAATG	3 cut(s)	424, 687, 837
BseAI	TCCGGA	1 cut(s)	1402
BseBI	CCWGG	5 cut(s)	268, 583, 711, 1530, 1836
BseDI	CCNNGG	8 cut(s)	506, 667, 906, 912, 983, 1081, 1834, 1870
BseGI	GGATG	5 cut(s)	968, 1111, 1281, 1625, 1724
BseLI	CCNNNNNNNGG	4 cut(s)	413, 710, 1669, 2004
BseMI	GCAATG	3 cut(s)	424, 687, 837
BseMII	CTCAG	5 cut(s)	279, 321, 456, 1199, 1445
BseNI	ACTGG	9 cut(s)	369, 457, 1454, 1490, 1561, 1579, 1774, 1817, 1998
BseRI	GAGGAG	1 cut(s)	545
BseSI	GKGCMC	1 cut(s)	1809
BseXI	GCAGC	8 cut(s)	279, 545, 620, 704, 745, 1475, 1684, 1978
BseYI	CCCAGC	6 cut(s)	406, 1027, 1196, 1547, 1802, 2051
BsgI	GTGCAG	2 cut(s)	744, 1581
Bsh1236I	CGCG	1 cut(s)	1083
Bsh1285I	CGRYCG	1 cut(s)	1219
BshFI	GGCC	6 cut(s)	463, 666, 911, 952, 1673, 1839
BshNI	GGYRCC	1 cut(s)	2046
BsiEI	CGRYCG	1 cut(s)	1219
BsiSI	CCGG	3 cut(s)	939, 1018, 1403
BslFI	GGGAC	3 cut(s)	754, 1034, 2069
BslI	CCNNNNNNNGG	4 cut(s)	413, 710, 1669, 2004
BsmAI	GTCTC	1 cut(s)	1923
BsmFI	GGGAC	3 cut(s)	754, 1034, 2069
BsmI	GAATGC	1 cut(s)	1466
BsnI	GGCC	6 cut(s)	463, 666, 911, 952, 1673, 1839
Bsp1286I	GDGCHC	3 cut(s)	1694, 1809, 1828
Bsp13I	TCCGGA	1 cut(s)	1402
Bsp143I	GATC	8 cut(s)	103, 644, 698, 1156, 1216, 1849, 2010, 2098
Bsp1720I	GCTNAGC	1 cut(s)	288
Bsp19I	CCATGG	2 cut(s)	667, 906
BspACI	CCGC	6 cut(s)	828, 1081, 1083, 1650, 1659, 1674
BspANI	GGCC	6 cut(s)	463, 666, 911, 952, 1673, 1839
BspCNI	CTCAG	5 cut(s)	280, 322, 457, 1198, 1444
BspEI	TCCGGA	1 cut(s)	1402
BspFNI	CGCG	1 cut(s)	1083
BspHI	TCATGA	1 cut(s)	1716
BspLI	GGNNCC	6 cut(s)	619, 700, 1483, 1691, 1825, 2048
BspOI	GCTAGC	1 cut(s)	720
BspPI	GGATC	3 cut(s)	693, 706, 2018
BspT107I	GGYRCC	1 cut(s)	2046
BspTI	CTTAAG	1 cut(s)	553
BsrBI	CCGCTC	2 cut(s)	1650, 1676
BsrDI	GCAATG	3 cut(s)	424, 687, 837
BsrI	ACTGG	9 cut(s)	369, 457, 1454, 1490, 1561, 1579, 1774, 1817, 1998
BssECI	CCNNGG	8 cut(s)	506, 667, 906, 912, 983, 1081, 1834, 1870
BssMI	GATC	8 cut(s)	103, 644, 698, 1156, 1216, 1849, 2010, 2098
BssNI	GRCGYC	1 cut(s)	579
BssSI	CACGAG	2 cut(s)	651, 768
BssT1I	CCWWGG	6 cut(s)	506, 667, 906, 912, 983, 1870
Bst2BI	CACGAG	2 cut(s)	651, 768
Bst2UI	CCWGG	5 cut(s)	268, 583, 711, 1530, 1836
Bst4CI	ACNGT	2 cut(s)	997, 1175
Bst6I	CTCTTC	1 cut(s)	90
BstACI	GRCGYC	1 cut(s)	579
BstAFI	CTTAAG	1 cut(s)	553
BstBAI	YACGTR	1 cut(s)	1810
BstC8I	GCNNGC	8 cut(s)	160, 718, 790, 794, 1395, 1652, 1656, 1779
BstDEI	CTNAG	5 cut(s)	288, 330, 465, 1185, 1431
BstDSI	CCRYGG	3 cut(s)	667, 906, 1081
BstENI	CCTNNNNNAGG	2 cut(s)	708, 1667
BstF5I	GGATG	5 cut(s)	968, 1111, 1281, 1625, 1724
BstFNI	CGCG	1 cut(s)	1083
BstKTI	GATC	8 cut(s)	106, 647, 701, 1159, 1219, 1852, 2013, 2101
BstMAI	GTCTC	1 cut(s)	1923
BstMBI	GATC	8 cut(s)	103, 644, 698, 1156, 1216, 1849, 2010, 2098
BstMCI	CGRYCG	1 cut(s)	1219
BstMWI	GCNNNNNNNGC	9 cut(s)	212, 301, 764, 773, 893, 902, 1133, 1367, 1394
BstNI	CCWGG	5 cut(s)	268, 583, 711, 1530, 1836
BstNSI	RCATGY	4 cut(s)	229, 238, 792, 1397
BstPAI	GACNNNNGTC	1 cut(s)	489
BstSCI	CCNGG	6 cut(s)	266, 581, 709, 1017, 1528, 1834
BstSLI	GKGCMC	1 cut(s)	1809
BstUI	CGCG	1 cut(s)	1083
BstV1I	GCAGC	8 cut(s)	279, 545, 620, 704, 745, 1475, 1684, 1978
BstV2I	GAAGAC	2 cut(s)	394, 1593
BstX2I	RGATCY	3 cut(s)	698, 2010, 2098
BstXI	CCANNNNNNTGG	2 cut(s)	188, 513
BstYI	RGATCY	3 cut(s)	698, 2010, 2098
BsuRI	GGCC	6 cut(s)	463, 666, 911, 952, 1673, 1839
BtgI	CCRYGG	3 cut(s)	667, 906, 1081
BtrI	CACGTC	1 cut(s)	735
BtsCI	GGATG	5 cut(s)	968, 1111, 1281, 1625, 1724
BtsI	GCAGTG	2 cut(s)	213, 530
BtsIMutI	CAGTG	6 cut(s)	213, 362, 450, 530, 993, 1461
Cac8I	GCNNGC	8 cut(s)	160, 718, 790, 794, 1395, 1652, 1656, 1779
CciI	TCATGA	1 cut(s)	1716
Cfr13I	GGNCC	5 cut(s)	617, 950, 1481, 1568, 2066
Cfr42I	CCGCGG	1 cut(s)	1084
CseI	GACGC	1 cut(s)	587
Csp6I	GTAC	4 cut(s)	29, 238, 1623, 2047
CspCI	CAANNNNNGTGG	2 cut(s)	862, 897
CviQI	GTAC	4 cut(s)	29, 238, 1623, 2047
DdeI	CTNAG	5 cut(s)	288, 330, 465, 1185, 1431
DpnI	GATC	8 cut(s)	105, 646, 700, 1158, 1218, 1851, 2012, 2100
DpnII	GATC	8 cut(s)	103, 644, 698, 1156, 1216, 1849, 2010, 2098
DrdI	GACNNNNNNGTC	2 cut(s)	142, 2081
DseDI	GACNNNNNNGTC	2 cut(s)	142, 2081
EaeI	YGGCCR	2 cut(s)	664, 909
Eam1104I	CTCTTC	1 cut(s)	90
EarI	CTCTTC	1 cut(s)	90
Eco130I	CCWWGG	6 cut(s)	506, 667, 906, 912, 983, 1870
Eco24I	GRGCYC	2 cut(s)	1694, 1828
Eco32I	GATATC	1 cut(s)	1909
Eco47I	GGWCC	4 cut(s)	617, 1481, 1568, 2066
Eco57I	CTGAAG	2 cut(s)	201, 1605
Eco72I	CACGTG	1 cut(s)	1810
EcoNI	CCTNNNNNAGG	2 cut(s)	708, 1667
EcoO109I	RGGNCCY	1 cut(s)	1481
EcoRI	GAATTC	1 cut(s)	312
EcoRII	CCWGG	5 cut(s)	266, 581, 709, 1528, 1834
EcoRV	GATATC	1 cut(s)	1909
EcoT14I	CCWWGG	6 cut(s)	506, 667, 906, 912, 983, 1870
EcoT38I	GRGCYC	2 cut(s)	1694, 1828
ErhI	CCWWGG	6 cut(s)	506, 667, 906, 912, 983, 1870
FalI	AAGNNNNNCTT	4 cut(s)	597, 629, 1502, 1534
FaqI	GGGAC	3 cut(s)	754, 1034, 2069
FauI	CCCGC	1 cut(s)	1643
FbaI	TGATCA	1 cut(s)	1156
FblI	GTMKAC	1 cut(s)	447
FokI	GGATG	5 cut(s)	955, 1098, 1288, 1612, 1711
FriOI	GRGCYC	2 cut(s)	1694, 1828
FspBI	CTAG	9 cut(s)	47, 717, 824, 1013, 1101, 1476, 1544, 1853, 1871
GsaI	CCCAGC	6 cut(s)	410, 1031, 1200, 1551, 1806, 2055
GsuI	CTGGAG	2 cut(s)	386, 667
HaeIII	GGCC	6 cut(s)	463, 666, 911, 952, 1673, 1839
HapII	CCGG	3 cut(s)	939, 1018, 1403
HgaI	GACGC	1 cut(s)	587
Hin1I	GRCGYC	1 cut(s)	579
HindIII	AAGCTT	1 cut(s)	160
HinfI	GANTC	6 cut(s)	638, 1180, 1429, 1931, 1943, 2030
HpaII	CCGG	3 cut(s)	939, 1018, 1403
HphI	GGTGA	5 cut(s)	639, 1166, 1376, 1443, 1670
Hpy166II	GTNNAC	4 cut(s)	253, 448, 1554, 1813
Hpy188I	TCNGA	8 cut(s)	135, 360, 440, 817, 1188, 1238, 1424, 2070
Hpy8I	GTNNAC	4 cut(s)	253, 448, 1554, 1813
Hpy99I	CGWCG	1 cut(s)	1903
HpyAV	CCTTC	3 cut(s)	109, 1289, 1673
HpyCH4III	ACNGT	2 cut(s)	997, 1175
HpyCH4IV	ACGT	2 cut(s)	734, 1809
HpyF10VI	GCNNNNNNNGC	9 cut(s)	212, 301, 764, 773, 893, 902, 1133, 1367, 1394
HpyF3I	CTNAG	5 cut(s)	288, 330, 465, 1185, 1431
HpySE526I	ACGT	2 cut(s)	734, 1809
Hsp92I	GRCGYC	1 cut(s)	579
Kpn2I	TCCGGA	1 cut(s)	1402
KpnI	GGTACC	1 cut(s)	2050
Ksp22I	TGATCA	1 cut(s)	1156
KspI	CCGCGG	1 cut(s)	1084
Kzo9I	GATC	8 cut(s)	103, 644, 698, 1156, 1216, 1849, 2010, 2098
LmnI	GCTCC	6 cut(s)	510, 713, 893, 1689, 1799, 1823
Lsp1109I	GCAGC	8 cut(s)	279, 545, 620, 704, 745, 1475, 1684, 1978
LweI	GCATC	3 cut(s)	419, 841, 1357
MaeI	CTAG	9 cut(s)	47, 717, 824, 1013, 1101, 1476, 1544, 1853, 1871
MaeII	ACGT	2 cut(s)	734, 1809
MaeIII	GTNAC	4 cut(s)	728, 1139, 1940, 2072
MalI	GATC	8 cut(s)	105, 646, 700, 1158, 1218, 1851, 2012, 2100
MbiI	CCGCTC	2 cut(s)	1650, 1676
MboI	GATC	8 cut(s)	103, 644, 698, 1156, 1216, 1849, 2010, 2098
MflI	RGATCY	3 cut(s)	698, 2010, 2098
MhlI	GDGCHC	3 cut(s)	1694, 1809, 1828
MlsI	TGGCCA	1 cut(s)	911
MluCI	AATT	5 cut(s)	312, 954, 1203, 1891, 2018
MluNI	TGGCCA	1 cut(s)	911
MlyI	GAGTC	4 cut(s)	1423, 1925, 1937, 2024
MmeI	TCCRAC	2 cut(s)	996, 1801
Mox20I	TGGCCA	1 cut(s)	911
MroI	TCCGGA	1 cut(s)	1402
MroXI	GAANNNNTTC	1 cut(s)	316
MscI	TGGCCA	1 cut(s)	911
MseI	TTAA	6 cut(s)	380, 554, 846, 1536, 1704, 2107
MslI	CAYNNNNRTG	1 cut(s)	186
Msp20I	TGGCCA	1 cut(s)	911
MspA1I	CMGCKG	2 cut(s)	695, 1083
MspCI	CTTAAG	1 cut(s)	553
MspI	CCGG	3 cut(s)	939, 1018, 1403
MspR9I	CCNGG	6 cut(s)	268, 583, 711, 1019, 1530, 1836
Mva1269I	GAATGC	1 cut(s)	1466
MvaI	CCWGG	5 cut(s)	268, 583, 711, 1530, 1836
MvnI	CGCG	1 cut(s)	1083
MwoI	GCNNNNNNNGC	9 cut(s)	212, 301, 764, 773, 893, 902, 1133, 1367, 1394
NciI	CCSGG	1 cut(s)	1019
NcoI	CCATGG	2 cut(s)	667, 906
NdeII	GATC	8 cut(s)	103, 644, 698, 1156, 1216, 1849, 2010, 2098
NheI	GCTAGC	1 cut(s)	716
NlaIV	GGNNCC	6 cut(s)	619, 700, 1483, 1691, 1825, 2048
NmuCI	GTSAC	2 cut(s)	1940, 2072
NspI	RCATGY	4 cut(s)	229, 238, 792, 1397
PaeI	GCATGC	2 cut(s)	792, 1397
PagI	TCATGA	1 cut(s)	1716
PciI	ACATGT	1 cut(s)	234
PctI	GAATGC	1 cut(s)	1466
PdmI	GAANNNNTTC	1 cut(s)	316
PfeI	GAWTC	2 cut(s)	638, 1180
PfoI	TCCNGGA	1 cut(s)	709
Ple19I	CGATCG	1 cut(s)	1219
PleI	GAGTC	4 cut(s)	1423, 1925, 1937, 2024
PmaCI	CACGTG	1 cut(s)	1810
PmlI	CACGTG	1 cut(s)	1810
PpsI	GAGTC	4 cut(s)	1423, 1925, 1937, 2024
Ppu21I	YACGTR	1 cut(s)	1810
PpuMI	RGGWCCY	1 cut(s)	1481
PscI	ACATGT	1 cut(s)	234
PshAI	GACNNNNGTC	1 cut(s)	489
Psp5II	RGGWCCY	1 cut(s)	1481
Psp6I	CCWGG	5 cut(s)	266, 581, 709, 1528, 1834
PspCI	CACGTG	1 cut(s)	1810
PspFI	CCCAGC	6 cut(s)	406, 1027, 1196, 1547, 1802, 2051
PspGI	CCWGG	5 cut(s)	266, 581, 709, 1528, 1834
PspN4I	GGNNCC	6 cut(s)	619, 700, 1483, 1691, 1825, 2048
PspPI	GGNCC	5 cut(s)	617, 950, 1481, 1568, 2066
PspPPI	RGGWCCY	1 cut(s)	1481
PsuI	RGATCY	3 cut(s)	698, 2010, 2098
PvuI	CGATCG	1 cut(s)	1219
PvuII	CAGCTG	1 cut(s)	695
RsaI	GTAC	4 cut(s)	30, 239, 1624, 2048
RsaNI	GTAC	4 cut(s)	29, 238, 1623, 2047
RseI	CAYNNNNRTG	1 cut(s)	186
SacII	CCGCGG	1 cut(s)	1084
SaqAI	TTAA	6 cut(s)	380, 554, 846, 1536, 1704, 2107
Sau3AI	GATC	8 cut(s)	103, 644, 698, 1156, 1216, 1849, 2010, 2098
Sau96I	GGNCC	5 cut(s)	617, 950, 1481, 1568, 2066
SchI	GAGTC	4 cut(s)	1423, 1925, 1937, 2024
ScrFI	CCNGG	6 cut(s)	268, 583, 711, 1019, 1530, 1836
SduI	GDGCHC	3 cut(s)	1694, 1809, 1828
SfaNI	GCATC	3 cut(s)	419, 841, 1357
Sfr303I	CCGCGG	1 cut(s)	1084
SgrBI	CCGCGG	1 cut(s)	1084
SinI	GGWCC	4 cut(s)	617, 1481, 1568, 2066
SmiMI	CAYNNNNRTG	1 cut(s)	186
SmlI	CTYRAG	4 cut(s)	553, 1508, 1667, 1945
SmoI	CTYRAG	4 cut(s)	553, 1508, 1667, 1945
SphI	GCATGC	2 cut(s)	792, 1397
Sse9I	AATT	5 cut(s)	312, 954, 1203, 1891, 2018
SsiI	CCGC	6 cut(s)	828, 1081, 1083, 1650, 1659, 1674
SspI	AATATT	1 cut(s)	1540
SspMI	CTAG	9 cut(s)	47, 717, 824, 1013, 1101, 1476, 1544, 1853, 1871
StyD4I	CCNGG	6 cut(s)	266, 581, 709, 1017, 1528, 1834
StyI	CCWWGG	6 cut(s)	506, 667, 906, 912, 983, 1870
TaaI	ACNGT	2 cut(s)	997, 1175
TaiI	ACGT	2 cut(s)	737, 1812
TaqI	TCGA	4 cut(s)	12, 376, 1443, 1966
TasI	AATT	5 cut(s)	312, 954, 1203, 1891, 2018
TauI	GCSGC	3 cut(s)	830, 1661, 1676
TfiI	GAWTC	2 cut(s)	638, 1180
Tru1I	TTAA	6 cut(s)	380, 554, 846, 1536, 1704, 2107
Tru9I	TTAA	6 cut(s)	380, 554, 846, 1536, 1704, 2107
TscAI	CASTG	6 cut(s)	213, 369, 457, 530, 1000, 1461
TseFI	GTSAC	2 cut(s)	1940, 2072
TseI	GCWGC	8 cut(s)	292, 558, 608, 692, 758, 1463, 1697, 1991
Tsp45I	GTSAC	2 cut(s)	1940, 2072
TspDTI	ATGAA	8 cut(s)	28, 128, 338, 408, 618, 638, 642, 1904
TspGWI	ACGGA	1 cut(s)	152
TspRI	CASTG	6 cut(s)	213, 369, 457, 530, 1000, 1461
Vha464I	CTTAAG	1 cut(s)	553
VpaK11BI	GGWCC	4 cut(s)	617, 1481, 1568, 2066
XagI	CCTNNNNNAGG	2 cut(s)	708, 1667
XapI	RAATTY	1 cut(s)	312
XbaI	TCTAGA	1 cut(s)	1475
XceI	RCATGY	4 cut(s)	229, 238, 792, 1397
XmaJI	CCTAGG	1 cut(s)	1870
XmiI	GTMKAC	1 cut(s)	447
XmnI	GAANNNNTTC	1 cut(s)	316
XspI	CTAG	9 cut(s)	47, 717, 824, 1013, 1101, 1476, 1544, 1853, 1871

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.