Rh7DG445500

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0004963
Physical Location & Seq
Forward (+)
63205100 .. 63205360
261 bp
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UTR
Exon/CDS
Intron
Rh7DG445500.1

Sequence Viewer

Length: 261 bp
ATGGAGGGGAAAGGCAGAGACGCGGCGGTGCCGCCGAGGTTGTTTGTGATGGGAAGATATGTGGGTGGATCCGAGGAGGTGTTGAAGATTGTGGAGGAGGGGTTGTTGGGGGAGATTCTAGAAGGTCTGCCCAAGAAGCGGGCCGGGTCGGTTTGCGAAGGGTGCGGAGAAGCGAAATTCTTGCCGTGTTTTCAGTGCAATGGGAGTTCGAAGATGGTGCTGGTGGTGAAAGAAGACGAGGTGGTGGTGGGGCAGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

86

Amino Acids

9.21

Weight (kDa)

5.48

Isoelectric Point (pI)

32.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRXCR1-2_C PF23733 52 - 74 1.3e-08 GRXCR1/2, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 28
AccII CGCG 1 cut(s) 23
AciI CCGC 5 cut(s) 23, 26, 32, 139, 165
AclWI GGATC 2 cut(s) 63, 76
AcsI RAATTY 1 cut(s) 176
AfiI CCNNNNNNNGG 1 cut(s) 138
AgsI TTSAA 1 cut(s) 85
Alw26I GTCTC 1 cut(s) 12
AlwI GGATC 2 cut(s) 63, 76
AoxI GGCC 1 cut(s) 141
ApoI RAATTY 1 cut(s) 176
AspS9I GGNCC 1 cut(s) 141
AsuC2I CCSGG 1 cut(s) 145
AsuHPI GGTGA 1 cut(s) 238
AsuII TTCGAA 1 cut(s) 209
BamHI GGATCC 1 cut(s) 68
BanI GGYRCC 1 cut(s) 28
BbsI GAAGAC 1 cut(s) 240
BccI CCATC 2 cut(s) 43, 208
BceAI ACGGC 1 cut(s) 169
BcgI CGANNNNNNTGC 4 cut(s) 163, 197, 199, 233
BcnI CCSGG 1 cut(s) 145
BcoDI GTCTC 1 cut(s) 12
BfaI CTAG 1 cut(s) 119
BisI GCNGC 2 cut(s) 24, 32
BlsI GCNGC 2 cut(s) 25, 33
Bme1390I CCNGG 1 cut(s) 145
BmgT120I GGNCC 1 cut(s) 141
BmiI GGNNCC 2 cut(s) 30, 70
BmrFI CCNGG 1 cut(s) 145
BpiI GAAGAC 1 cut(s) 240
Bpu14I TTCGAA 1 cut(s) 209
BpuMI CCSGG 1 cut(s) 145
BsaJI CCNNGG 2 cut(s) 35, 72
BsaXI ACNNNNNCTCC 4 cut(s) 86, 89, 116, 119
Bsc4I CCNNNNNNNGG 1 cut(s) 138
Bse3DI GCAATG 1 cut(s) 205
BseDI CCNNGG 2 cut(s) 35, 72
BseLI CCNNNNNNNGG 1 cut(s) 138
BseMI GCAATG 1 cut(s) 205
BseRI GAGGAG 2 cut(s) 89, 110
Bsh1236I CGCG 1 cut(s) 23
BshFI GGCC 1 cut(s) 143
BshNI GGYRCC 1 cut(s) 28
BsiSI CCGG 1 cut(s) 144
BslI CCNNNNNNNGG 1 cut(s) 138
BsmAI GTCTC 1 cut(s) 12
BsmBI CGTCTC 1 cut(s) 12
BsnI GGCC 1 cut(s) 143
Bsp119I TTCGAA 1 cut(s) 209
Bsp143I GATC 1 cut(s) 68
BspACI CCGC 5 cut(s) 23, 26, 32, 139, 165
BspANI GGCC 1 cut(s) 143
BspFNI CGCG 1 cut(s) 23
BspLI GGNNCC 2 cut(s) 30, 70
BspPI GGATC 2 cut(s) 63, 76
BspT104I TTCGAA 1 cut(s) 209
BspT107I GGYRCC 1 cut(s) 28
BsrDI GCAATG 1 cut(s) 205
BssECI CCNNGG 2 cut(s) 35, 72
BssMI GATC 1 cut(s) 68
BstBI TTCGAA 1 cut(s) 209
BstC8I GCNNGC 1 cut(s) 141
BstFNI CGCG 1 cut(s) 23
BstKTI GATC 1 cut(s) 71
BstMAI GTCTC 1 cut(s) 12
BstMBI GATC 1 cut(s) 68
BstMWI GCNNNNNNNGC 2 cut(s) 136, 162
BstSCI CCNGG 1 cut(s) 143
BstUI CGCG 1 cut(s) 23
BstV2I GAAGAC 1 cut(s) 240
BstX2I RGATCY 1 cut(s) 68
BstYI RGATCY 1 cut(s) 68
BsuRI GGCC 1 cut(s) 143
BtsIMutI CAGTG 1 cut(s) 200
Cac8I GCNNGC 1 cut(s) 141
Cfr13I GGNCC 1 cut(s) 141
CseI GACGC 1 cut(s) 29
CviJI RGCY 1 cut(s) 143
CviKI_1 RGCY 1 cut(s) 143
DpnI GATC 1 cut(s) 70
DpnII GATC 1 cut(s) 68
Esp3I CGTCTC 1 cut(s) 12
FaiI YATR 1 cut(s) 60
FauI CCCGC 1 cut(s) 132
Fnu4HI GCNGC 2 cut(s) 24, 32
Fsp4HI GCNGC 2 cut(s) 24, 32
FspBI CTAG 1 cut(s) 119
GluI GCNGC 2 cut(s) 24, 32
HaeIII GGCC 1 cut(s) 143
HapII CCGG 1 cut(s) 144
HgaI GACGC 1 cut(s) 29
HinfI GANTC 1 cut(s) 115
HpaII CCGG 1 cut(s) 144
HphI GGTGA 1 cut(s) 238
Hpy188I TCNGA 1 cut(s) 73
Hpy188III TCNNGA 1 cut(s) 119
HpyAV CCTTC 2 cut(s) 116, 152
HpyCH4V TGCA 1 cut(s) 198
HpyF10VI GCNNNNNNNGC 2 cut(s) 136, 162
Kzo9I GATC 1 cut(s) 68
LpnPI CCDG 2 cut(s) 157, 206
MaeI CTAG 1 cut(s) 119
MalI GATC 1 cut(s) 70
MboI GATC 1 cut(s) 68
MboII GAAGA 4 cut(s) 66, 97, 223, 245
MflI RGATCY 1 cut(s) 68
MluCI AATT 1 cut(s) 176
MnlI CCTC 7 cut(s) 30, 67, 70, 88, 91, 232, 249
MspI CCGG 1 cut(s) 144
MspR9I CCNGG 1 cut(s) 145
MvnI CGCG 1 cut(s) 23
MwoI GCNNNNNNNGC 2 cut(s) 136, 162
NciI CCSGG 1 cut(s) 145
NdeII GATC 1 cut(s) 68
NlaIV GGNNCC 2 cut(s) 30, 70
NmeAIII GCCGAG 1 cut(s) 60
NspV TTCGAA 1 cut(s) 209
PfeI GAWTC 1 cut(s) 115
PkrI GCNGC 2 cut(s) 25, 33
PspN4I GGNNCC 2 cut(s) 30, 70
PspPI GGNCC 1 cut(s) 141
PsuI RGATCY 1 cut(s) 68
SatI GCNGC 2 cut(s) 24, 32
Sau3AI GATC 1 cut(s) 68
Sau96I GGNCC 1 cut(s) 141
ScrFI CCNGG 1 cut(s) 145
SetI ASST 5 cut(s) 41, 81, 127, 243, 260
SfuI TTCGAA 1 cut(s) 209
Sse9I AATT 1 cut(s) 176
SsiI CCGC 5 cut(s) 23, 26, 32, 139, 165
SspMI CTAG 1 cut(s) 119
StyD4I CCNGG 1 cut(s) 143
TaqI TCGA 1 cut(s) 209
TasI AATT 1 cut(s) 176
TauI GCSGC 2 cut(s) 26, 34
TfiI GAWTC 1 cut(s) 115
TscAI CASTG 1 cut(s) 200
TspRI CASTG 1 cut(s) 200
XapI RAATTY 1 cut(s) 176
XbaI TCTAGA 1 cut(s) 118
XspI CTAG 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.