MD09G1197100.v1.1

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0004963
Physical Location & Seq
Forward (+)
17941204 .. 17941551
348 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1197100.v1.1.491

Sequence Viewer

Length: 348 bp
ATGCGGCGGACTTTTGAGGAGTGCAACGCCGTCCGGGTAGAGATAGAAGGCCTCGGGGTGATGATTGTCGAGCGTGACATGTCAATGGATCACGGGTTCGGAGAAGAGTTGAGCGACTTGATGAAAGGGAAAGGGAAGGAGGCAGCGGTGCCGTCGCGGGTGTTTGTGAAGAGGAGATATATAGGCAGCTCTGAGGAAGTGCTGAAGATTTTGGAGGGGGGTTTGCTGGGTGAGATTCTTGTTAGGTGTCCAAAGAAAAACGCTGGGTCTGTGTGTGAAGGGTGTGGGGAGGCAAGGTTATTACCAAACGCTATCATAGTGTTTTTTTTTAGAAAAGCATTTTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

116

Amino Acids

12.78

Weight (kDa)

7.65

Isoelectric Point (pI)

52.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 346
AccB1I GGYRCC 1 cut(s) 148
AccII CGCG 1 cut(s) 157
AciI CCGC 4 cut(s) 4, 7, 146, 157
AclWI GGATC 1 cut(s) 96
AcuI CTGAAG 1 cut(s) 224
AflIII ACRYGT 1 cut(s) 78
AloI GAACNNNNNNTCC 2 cut(s) 80, 112
AluBI AGCT 1 cut(s) 189
AluI AGCT 1 cut(s) 189
AlwI GGATC 1 cut(s) 96
Ama87I CYCGRG 1 cut(s) 53
AoxI GGCC 1 cut(s) 49
ApeKI GCWGC 2 cut(s) 143, 186
AsuC2I CCSGG 1 cut(s) 35
AsuHPI GGTGA 2 cut(s) 70, 242
AvaI CYCGRG 1 cut(s) 53
BanI GGYRCC 1 cut(s) 148
BbvI GCAGC 2 cut(s) 155, 198
BceAI ACGGC 2 cut(s) 14, 136
BcnI CCSGG 1 cut(s) 35
BisI GCNGC 3 cut(s) 5, 144, 187
BlsI GCNGC 3 cut(s) 6, 145, 188
Bme1390I CCNGG 1 cut(s) 35
BmeT110I CYCGRG 1 cut(s) 53
BmiI GGNNCC 1 cut(s) 150
BmrFI CCNGG 1 cut(s) 35
BpuMI CCSGG 1 cut(s) 35
BsaJI CCNNGG 1 cut(s) 52
BsaXI ACNNNNNCTCC 2 cut(s) 281, 311
BseDI CCNNGG 1 cut(s) 52
BseMII CTCAG 1 cut(s) 183
BseRI GAGGAG 2 cut(s) 32, 187
BseXI GCAGC 2 cut(s) 155, 198
BseYI CCCAGC 2 cut(s) 226, 263
Bsh1236I CGCG 1 cut(s) 157
BshFI GGCC 1 cut(s) 51
BshNI GGYRCC 1 cut(s) 148
BsiHKCI CYCGRG 1 cut(s) 53
BsiSI CCGG 1 cut(s) 34
BsnI GGCC 1 cut(s) 51
BsoBI CYCGRG 1 cut(s) 53
Bsp143I GATC 1 cut(s) 88
BspACI CCGC 4 cut(s) 4, 7, 146, 157
BspANI GGCC 1 cut(s) 51
BspCNI CTCAG 1 cut(s) 184
BspFNI CGCG 1 cut(s) 157
BspLI GGNNCC 1 cut(s) 150
BspPI GGATC 1 cut(s) 96
BspT107I GGYRCC 1 cut(s) 148
BssECI CCNNGG 1 cut(s) 52
BssMI GATC 1 cut(s) 88
Bst6I CTCTTC 2 cut(s) 99, 164
BstDEI CTNAG 1 cut(s) 192
BstFNI CGCG 1 cut(s) 157
BstKTI GATC 1 cut(s) 91
BstMBI GATC 1 cut(s) 88
BstNSI RCATGY 1 cut(s) 82
BstSCI CCNGG 1 cut(s) 33
BstUI CGCG 1 cut(s) 157
BstV1I GCAGC 2 cut(s) 155, 198
BsuRI GGCC 1 cut(s) 51
CviAII CATG 1 cut(s) 79
CviJI RGCY 2 cut(s) 51, 189
CviKI_1 RGCY 2 cut(s) 51, 189
DdeI CTNAG 1 cut(s) 192
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
Eam1104I CTCTTC 2 cut(s) 99, 164
EarI CTCTTC 2 cut(s) 99, 164
EciI GGCGGA 1 cut(s) 22
Eco147I AGGCCT 1 cut(s) 51
Eco57I CTGAAG 1 cut(s) 224
Eco88I CYCGRG 1 cut(s) 53
FaeI CATG 1 cut(s) 82
FaiI YATR 5 cut(s) 80, 180, 182, 317, 346
FatI CATG 1 cut(s) 78
FauI CCCGC 1 cut(s) 150
Fnu4HI GCNGC 3 cut(s) 5, 144, 187
Fsp4HI GCNGC 3 cut(s) 5, 144, 187
GluI GCNGC 3 cut(s) 5, 144, 187
GsaI CCCAGC 2 cut(s) 230, 267
HaeIII GGCC 1 cut(s) 51
HapII CCGG 1 cut(s) 34
Hin1II CATG 1 cut(s) 82
HinfI GANTC 1 cut(s) 235
HpaII CCGG 1 cut(s) 34
HphI GGTGA 2 cut(s) 70, 242
Hpy188I TCNGA 2 cut(s) 101, 193
Hpy99I CGWCG 1 cut(s) 157
HpyAV CCTTC 3 cut(s) 41, 130, 272
HpyCH4V TGCA 1 cut(s) 24
HpyF3I CTNAG 1 cut(s) 192
Hsp92II CATG 1 cut(s) 82
Kzo9I GATC 1 cut(s) 88
LpnPI CCDG 3 cut(s) 47, 212, 249
Lsp1109I GCAGC 2 cut(s) 155, 198
MaeIII GTNAC 1 cut(s) 74
MalI GATC 1 cut(s) 90
MboI GATC 1 cut(s) 88
MboII GAAGA 3 cut(s) 116, 181, 217
MnlI CCTC 7 cut(s) 10, 62, 133, 165, 187, 208, 283
MslI CAYNNNNRTG 1 cut(s) 83
MspA1I CMGCKG 1 cut(s) 146
MspI CCGG 1 cut(s) 34
MspR9I CCNGG 1 cut(s) 35
MvnI CGCG 1 cut(s) 157
NciI CCSGG 1 cut(s) 35
NdeII GATC 1 cut(s) 88
NlaIII CATG 1 cut(s) 82
NlaIV GGNNCC 1 cut(s) 150
NmuCI GTSAC 1 cut(s) 74
NspI RCATGY 1 cut(s) 82
PceI AGGCCT 1 cut(s) 51
PciI ACATGT 1 cut(s) 78
PfeI GAWTC 1 cut(s) 235
PkrI GCNGC 3 cut(s) 6, 145, 188
PscI ACATGT 1 cut(s) 78
PsiI TTATAA 1 cut(s) 346
PspFI CCCAGC 2 cut(s) 226, 263
PspN4I GGNNCC 1 cut(s) 150
RseI CAYNNNNRTG 1 cut(s) 83
SatI GCNGC 3 cut(s) 5, 144, 187
Sau3AI GATC 1 cut(s) 88
ScrFI CCNGG 1 cut(s) 35
SetI ASST 3 cut(s) 191, 248, 299
SmiMI CAYNNNNRTG 1 cut(s) 83
SseBI AGGCCT 1 cut(s) 51
SsiI CCGC 4 cut(s) 4, 7, 146, 157
StuI AGGCCT 1 cut(s) 51
StyD4I CCNGG 1 cut(s) 33
TaqI TCGA 1 cut(s) 69
TauI GCSGC 1 cut(s) 7
TfiI GAWTC 1 cut(s) 235
TseFI GTSAC 1 cut(s) 74
TseI GCWGC 2 cut(s) 143, 186
Tsp45I GTSAC 1 cut(s) 74
TspDTI ATGAA 1 cut(s) 137
XceI RCATGY 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.