Rh7DG307400

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0004963
Physical Location & Seq
Reverse (-)
35873195 .. 35873686
492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG307400.1

Sequence Viewer

Length: 492 bp
ATGGTCGGCCTCGACGCCGACAGCTTCCGGTTCTCGCCGCTCCCGCCGCCGAAACCCTTCTCGATTCGAACCCCGAAAACCTCGGATAAAGAGAACTCCAACCCGAACCGGTTTGTTTTAGTCAAAGGCCCGCTCGACCGGTTTGAGAGTATATGCCCGCCGGGGGGAGAGAACAAACTAGTGCTGTATACGACGTCATTGCGGGGAGTGCGGAAGACTTTAAAGGCGTGCAATGCGGTCCGGGCGGCGATGGAGTATCTCGGCGTGATGGTCTGCGAGCGTGACGTGTCGATGGATCGCGAATTTCGAGAAGAGCTGAATGACTTGATGGAGGGGAAAGGCAGAGACGCGGCGGTGCCGCCGAGGTTGTTTGTGAAGGGAAGATATGTGGGTGGATCTGAGGAGGTGTTGAAGATTGTGGAGGAGGGGTTGTTGGGGGAGATTCTAGAAGGTCTGCCCAAGAAGTGGGCCGGGTCCGTTTGCGAAGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

163

Amino Acids

18.02

Weight (kDa)

7.6

Isoelectric Point (pI)

29.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 61 - 130 1.3e-08 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 197
AccB1I GGYRCC 1 cut(s) 355
AccB7I CCANNNNNTGG 1 cut(s) 465
AccBSI CCGCTC 2 cut(s) 40, 133
AccI GTMKAC 1 cut(s) 188
AccII CGCG 2 cut(s) 300, 350
AclWI GGATC 2 cut(s) 303, 403
AcsI RAATTY 1 cut(s) 302
AcyI GRCGYC 2 cut(s) 15, 194
AfiI CCNNNNNNNGG 3 cut(s) 163, 164, 465
AflIII ACRYGT 1 cut(s) 285
AgeI ACCGGT 2 cut(s) 108, 138
AgsI TTSAA 1 cut(s) 412
AhlI ACTAGT 1 cut(s) 178
AjiI CACGTC 1 cut(s) 286
AluBI AGCT 2 cut(s) 24, 316
AluI AGCT 2 cut(s) 24, 316
Alw26I GTCTC 1 cut(s) 339
AlwI GGATC 2 cut(s) 303, 403
AoxI GGCC 3 cut(s) 7, 127, 468
ApoI RAATTY 1 cut(s) 302
AsiGI ACCGGT 2 cut(s) 108, 138
Asp700I GAANNNNTTC 1 cut(s) 56
AspS9I GGNCC 4 cut(s) 128, 238, 468, 474
AsuC2I CCSGG 3 cut(s) 162, 242, 472
AsuII TTCGAA 1 cut(s) 67
AvaII GGWCC 2 cut(s) 238, 474
BanI GGYRCC 1 cut(s) 355
BbsI GAAGAC 1 cut(s) 221
BccI CCATC 4 cut(s) 244, 262, 286, 322
BcgI CGANNNNNNTGC 2 cut(s) 181, 215
BcnI CCSGG 3 cut(s) 162, 242, 472
BcoDI GTCTC 1 cut(s) 339
BcuI ACTAGT 1 cut(s) 178
BfaI CTAG 2 cut(s) 179, 446
BisI GCNGC 5 cut(s) 38, 47, 246, 351, 359
BlsI GCNGC 5 cut(s) 39, 48, 247, 352, 360
Bme1390I CCNGG 3 cut(s) 162, 242, 472
Bme18I GGWCC 2 cut(s) 238, 474
BmgBI CACGTC 1 cut(s) 286
BmgT120I GGNCC 4 cut(s) 128, 238, 468, 474
BmiI GGNNCC 2 cut(s) 357, 475
BmrFI CCNGG 3 cut(s) 162, 242, 472
BpiI GAAGAC 1 cut(s) 221
Bpu14I TTCGAA 1 cut(s) 67
BpuMI CCSGG 3 cut(s) 162, 242, 472
BsaHI GRCGYC 2 cut(s) 15, 194
BsaJI CCNNGG 3 cut(s) 81, 161, 362
BsaWI WCCGGW 3 cut(s) 27, 108, 138
BsaXI ACNNNNNCTCC 4 cut(s) 413, 416, 443, 446
Bsc4I CCNNNNNNNGG 3 cut(s) 163, 164, 465
Bse118I RCCGGY 2 cut(s) 108, 138
Bse3DI GCAATG 2 cut(s) 197, 238
BseDI CCNNGG 3 cut(s) 81, 161, 362
BseLI CCNNNNNNNGG 3 cut(s) 163, 164, 465
BseMI GCAATG 2 cut(s) 197, 238
BseMII CTCAG 1 cut(s) 390
BseRI GAGGAG 2 cut(s) 416, 437
Bsh1236I CGCG 2 cut(s) 300, 350
Bsh1285I CGRYCG 1 cut(s) 139
BshFI GGCC 3 cut(s) 9, 129, 470
BshNI GGYRCC 1 cut(s) 355
BshTI ACCGGT 2 cut(s) 108, 138
BsiEI CGRYCG 1 cut(s) 139
BsiSI CCGG 6 cut(s) 28, 109, 139, 161, 241, 471
BslI CCNNNNNNNGG 3 cut(s) 163, 164, 465
BsmAI GTCTC 1 cut(s) 339
BsmBI CGTCTC 1 cut(s) 339
BsnI GGCC 3 cut(s) 9, 129, 470
Bsp119I TTCGAA 1 cut(s) 67
Bsp143I GATC 2 cut(s) 295, 395
Bsp68I TCGCGA 1 cut(s) 300
BspANI GGCC 3 cut(s) 9, 129, 470
BspCNI CTCAG 1 cut(s) 391
BspFNI CGCG 2 cut(s) 300, 350
BspLI GGNNCC 2 cut(s) 357, 475
BspPI GGATC 2 cut(s) 303, 403
BspQI GCTCTTC 1 cut(s) 306
BspT104I TTCGAA 1 cut(s) 67
BspT107I GGYRCC 1 cut(s) 355
BsrBI CCGCTC 2 cut(s) 40, 133
BsrDI GCAATG 2 cut(s) 197, 238
BsrFI RCCGGY 2 cut(s) 108, 138
BssAI RCCGGY 2 cut(s) 108, 138
BssECI CCNNGG 3 cut(s) 81, 161, 362
BssMI GATC 2 cut(s) 295, 395
BssNAI GTATAC 1 cut(s) 189
BssNI GRCGYC 2 cut(s) 15, 194
Bst1107I GTATAC 1 cut(s) 189
Bst6I CTCTTC 1 cut(s) 306
BstACI GRCGYC 2 cut(s) 15, 194
BstBI TTCGAA 1 cut(s) 67
BstC8I GCNNGC 4 cut(s) 131, 158, 229, 278
BstDEI CTNAG 1 cut(s) 399
BstFNI CGCG 2 cut(s) 300, 350
BstKTI GATC 2 cut(s) 298, 398
BstMAI GTCTC 1 cut(s) 339
BstMBI GATC 2 cut(s) 295, 395
BstMCI CGRYCG 1 cut(s) 139
BstMWI GCNNNNNNNGC 5 cut(s) 43, 46, 208, 233, 242
BstSCI CCNGG 3 cut(s) 160, 240, 470
BstUI CGCG 2 cut(s) 300, 350
BstV2I GAAGAC 1 cut(s) 221
BstX2I RGATCY 1 cut(s) 395
BstYI RGATCY 1 cut(s) 395
BstZ17I GTATAC 1 cut(s) 189
BsuRI GGCC 3 cut(s) 9, 129, 470
BtgZI GCGATG 1 cut(s) 263
BtrI CACGTC 1 cut(s) 286
BtuMI TCGCGA 1 cut(s) 300
Cac8I GCNNGC 4 cut(s) 131, 158, 229, 278
Cfr10I RCCGGY 2 cut(s) 108, 138
Cfr13I GGNCC 4 cut(s) 128, 238, 468, 474
CpoI CGGWCCG 1 cut(s) 238
CseI GACGC 2 cut(s) 23, 356
CspAI ACCGGT 2 cut(s) 108, 138
CspI CGGWCCG 1 cut(s) 238
CviJI RGCY 5 cut(s) 9, 24, 129, 316, 470
CviKI_1 RGCY 5 cut(s) 9, 24, 129, 316, 470
DdeI CTNAG 1 cut(s) 399
DpnI GATC 2 cut(s) 297, 397
DpnII GATC 2 cut(s) 295, 395
DraI TTTAAA 1 cut(s) 222
Eam1104I CTCTTC 1 cut(s) 306
EarI CTCTTC 1 cut(s) 306
Eco47I GGWCC 2 cut(s) 238, 474
Esp3I CGTCTC 1 cut(s) 339
FaiI YATR 4 cut(s) 152, 154, 189, 387
FauI CCCGC 4 cut(s) 51, 138, 165, 195
FblI GTMKAC 1 cut(s) 188
Fnu4HI GCNGC 5 cut(s) 38, 47, 246, 351, 359
Fsp4HI GCNGC 5 cut(s) 38, 47, 246, 351, 359
FspBI CTAG 2 cut(s) 179, 446
GluI GCNGC 5 cut(s) 38, 47, 246, 351, 359
HaeIII GGCC 3 cut(s) 9, 129, 470
HapII CCGG 6 cut(s) 28, 109, 139, 161, 241, 471
HgaI GACGC 2 cut(s) 23, 356
Hin1I GRCGYC 2 cut(s) 15, 194
HinfI GANTC 2 cut(s) 64, 442
HpaII CCGG 6 cut(s) 28, 109, 139, 161, 241, 471
Hpy166II GTNNAC 1 cut(s) 189
Hpy188I TCNGA 2 cut(s) 85, 400
Hpy188III TCNNGA 4 cut(s) 61, 299, 308, 446
Hpy8I GTNNAC 1 cut(s) 189
Hpy99I CGWCG 2 cut(s) 17, 196
HpyAV CCTTC 4 cut(s) 67, 370, 443, 479
HpyCH4IV ACGT 2 cut(s) 194, 285
HpyCH4V TGCA 1 cut(s) 231
HpyF10VI GCNNNNNNNGC 5 cut(s) 43, 46, 208, 233, 242
HpyF3I CTNAG 1 cut(s) 399
HpySE526I ACGT 2 cut(s) 194, 285
Hsp92I GRCGYC 2 cut(s) 15, 194
Kzo9I GATC 2 cut(s) 295, 395
LguI GCTCTTC 1 cut(s) 306
LmnI GCTCC 1 cut(s) 45
LpnPI CCDG 6 cut(s) 41, 122, 152, 174, 254, 484
MaeI CTAG 2 cut(s) 179, 446
MaeII ACGT 2 cut(s) 194, 285
MaeIII GTNAC 1 cut(s) 281
MalI GATC 2 cut(s) 297, 397
MbiI CCGCTC 2 cut(s) 40, 133
MboI GATC 2 cut(s) 295, 395
MboII GAAGA 4 cut(s) 226, 323, 393, 424
MflI RGATCY 1 cut(s) 395
MluCI AATT 1 cut(s) 302
MmeI TCCRAC 1 cut(s) 123
MnlI CCTC 8 cut(s) 20, 91, 325, 357, 394, 397, 415, 418
MroXI GAANNNNTTC 1 cut(s) 56
MseI TTAA 1 cut(s) 221
MspI CCGG 6 cut(s) 28, 109, 139, 161, 241, 471
MspR9I CCNGG 3 cut(s) 162, 242, 472
MvnI CGCG 2 cut(s) 300, 350
MwoI GCNNNNNNNGC 5 cut(s) 43, 46, 208, 233, 242
NciI CCSGG 3 cut(s) 162, 242, 472
NdeII GATC 2 cut(s) 295, 395
NlaIV GGNNCC 2 cut(s) 357, 475
NmeAIII GCCGAG 2 cut(s) 240, 387
NmuCI GTSAC 1 cut(s) 281
NruI TCGCGA 1 cut(s) 300
NspV TTCGAA 1 cut(s) 67
PciSI GCTCTTC 1 cut(s) 306
PcsI WCGNNNNNNNCGW 1 cut(s) 304
PdmI GAANNNNTTC 1 cut(s) 56
PfeI GAWTC 2 cut(s) 64, 442
PflMI CCANNNNNTGG 1 cut(s) 465
PinAI ACCGGT 2 cut(s) 108, 138
PkrI GCNGC 5 cut(s) 39, 48, 247, 352, 360
PspN4I GGNNCC 2 cut(s) 357, 475
PspPI GGNCC 4 cut(s) 128, 238, 468, 474
PsuI RGATCY 1 cut(s) 395
RruI TCGCGA 1 cut(s) 300
Rsr2I CGGWCCG 1 cut(s) 238
RsrII CGGWCCG 1 cut(s) 238
SapI GCTCTTC 1 cut(s) 306
SaqAI TTAA 1 cut(s) 221
SatI GCNGC 5 cut(s) 38, 47, 246, 351, 359
Sau3AI GATC 2 cut(s) 295, 395
Sau96I GGNCC 4 cut(s) 128, 238, 468, 474
ScrFI CCNGG 3 cut(s) 162, 242, 472
SetI ASST 8 cut(s) 26, 83, 197, 288, 318, 368, 408, 454
SfuI TTCGAA 1 cut(s) 67
SinI GGWCC 2 cut(s) 238, 474
SpeI ACTAGT 1 cut(s) 178
Sse9I AATT 1 cut(s) 302
SspMI CTAG 2 cut(s) 179, 446
StyD4I CCNGG 3 cut(s) 160, 240, 470
TaiI ACGT 2 cut(s) 197, 288
TaqI TCGA 6 cut(s) 12, 62, 67, 135, 290, 307
TasI AATT 1 cut(s) 302
TauI GCSGC 5 cut(s) 40, 49, 248, 353, 361
TfiI GAWTC 2 cut(s) 64, 442
Tru1I TTAA 1 cut(s) 221
Tru9I TTAA 1 cut(s) 221
TseFI GTSAC 1 cut(s) 281
Tsp45I GTSAC 1 cut(s) 281
TspGWI ACGGA 1 cut(s) 466
Van91I CCANNNNNTGG 1 cut(s) 465
VpaK11BI GGWCC 2 cut(s) 238, 474
XapI RAATTY 1 cut(s) 302
XbaI TCTAGA 1 cut(s) 445
XmiI GTMKAC 1 cut(s) 188
XmnI GAANNNNTTC 1 cut(s) 56
XspI CTAG 2 cut(s) 179, 446
ZraI GACGTC 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.