Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0004963

Physical Location & Seq

Genomic Coordinates Reverse (-)

26161861 .. 26163389

Gene Structure 1529 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1121200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGGTTGTGCTTCTTCTAATATCTTCAACCACAACGACGAGTTCTCCCAACTCGGCAGCTCCGCGCTGAGCCACCACATCGTCTCGCTGACTTCCTCCACCTACGGCCTCCTCACTCTCGACCCGCCGCCTCCTGCGCCCACCACTCCGTCGACACCCCCTTCTCGATTCACTCTCGGGTCCATTTTCCCGAGCCCCTTGTCCCAGCCCAAGTCGCTCGAGTCCGAACCCAAGTCGCTCTTGTCCGACCCGAGACCGCTGCCTTCCGACCCGGAAGTCATTAACTCATGGGAGCTTATGGACGGGCTTGACGCCGACAGCTTCAGATTCTCGCCGCTTCCGCCGCCCAAACCCTTCGGTTTCTTAGACCCAAAAACCCCCGATAAAGAAAACTCCAACCCGAATCGCACAATTCTCAAATCTCCGTACGAAAGCGTCTTCCGGGTGAACAACAAGAAGGACCCACTTGACCGGTTCGAGAAAATATGCCCGCCGGGCGGAGAAAACAAAGTGGTTGTCTACACGACGACGCTGCGAGGAGTGCGGCGGACTTTTGAGGAGTGCAACGCCGTCCGGGCAGAGATAGAAGGCCTCGGGGTGATGATTGTCGAGCGTGACGTGTCGATGGATCGCGGGTTCAGAGAAGAGTTGAGCGACTTGATGAAGGGGAAAGGGAAGGAGGCGGCGGTGCCGCCGCGGGTGTTTGTGAAGGGGAGATATATAGGCGGCTCTGAGGAGGTGCTGAAGATTTTGGAGGAGGGTTTGCTGGGTGAGATTCTTGCTGGGTGTCCAAAGAAAAAAGCTGGGTCTGTGTGTGAAGGGTGTGGGGAGGCAAGGTTCTTGCCCTGCTTCCAGTGCAATGGGAGTTCAAAGATGGTGCTGATGGTGAATGATGATGTGGCGGGGCAGCGGCAGGGGACGACGGTGGTGACGAGGTGTCCTGAGTGTAATGAGAATGGGCTGGTGCTTTGCCCAATTTGTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glutaredoxin

Protein Analysis

329

Amino Acids

35.67

Weight (kDa)

5.49

Isoelectric Point (pI)

49.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glutaredoxin	PF00462	171 - 241	5e-09	Glutaredoxin
GRXCR1-2_C	PF23733	272 - 328	6.7e-18	GRXCR1/2, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32760 AT4G10630
fragaria_vesca	FvH4_5g10700
malus_domestica	MD06G1121200.v1.1 MD09G1197100.v1.1 MD14G1137800.v1.1
prunus_persica	Prupe.5G131800_v2.0.a1
pyrus_communis	pycom06g11250 pycom14g11300
rosa_chinensis	RchiOBHm_Chr1g0342161 RchiOBHm_Chr7g0187441
rosa_laevigata	RLG00000001600 RLG00000004781 RLG00000009467
rosa_multiflora	Rmu_sc0001230.1_g000015 Rmu_sc0003363.1_g000014 Rmu_sc0009146.1_g000005
rosa_roxburghii	Rroxscaffold_3G00267420
rosa_rugosa	Rorug06G0355300 Rorug06G0481600
rosa_samantha	Rh1CG026900 Rh5DG426300 Rh7AG086100 Rh7BG087600 Rh7CG087000 Rh7DG088600 Rh7DG307400 Rh7DG445500
rosa_wichuraiana	Rw2G033920 Rw7G007600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	275
AccB1I	GGYRCC	1 cut(s)	688
AccI	GTMKAC	2 cut(s)	152, 519
AccII	CGCG	3 cut(s)	65, 633, 697
AclWI	GGATC	1 cut(s)	636
AcuI	CTGAAG	2 cut(s)	307, 764
AcyI	GRCGYC	1 cut(s)	312
AfaI	GTAC	1 cut(s)	428
AfiI	CCNNNNNNNGG	1 cut(s)	497
AflIII	ACRYGT	1 cut(s)	618
AgeI	ACCGGT	1 cut(s)	471
AgsI	TTSAA	2 cut(s)	28, 870
AhdI	GACNNNNNGTC	1 cut(s)	936
AjiI	CACGTC	1 cut(s)	619
AloI	GAACNNNNNNTCC	4 cut(s)	620, 652, 821, 853
AluBI	AGCT	5 cut(s)	60, 295, 321, 803, 984
AluI	AGCT	5 cut(s)	60, 295, 321, 803, 984
Alw26I	GTCTC	2 cut(s)	88, 247
AlwI	GGATC	1 cut(s)	636
Ama87I	CYCGRG	5 cut(s)	176, 190, 218, 250, 593
AoxI	GGCC	2 cut(s)	106, 589
ApeKI	GCWGC	4 cut(s)	57, 259, 532, 907
ArsI	GACNNNNNNTTYG	2 cut(s)	501, 533
AsiGI	ACCGGT	1 cut(s)	471
AspLEI	GCGC	2 cut(s)	67, 139
AspS9I	GGNCC	2 cut(s)	180, 460
AsuC2I	CCSGG	4 cut(s)	272, 443, 495, 575
AsuHPI	GGTGA	5 cut(s)	457, 610, 782, 898, 940
AvaI	CYCGRG	5 cut(s)	176, 190, 218, 250, 593
AvaII	GGWCC	2 cut(s)	180, 460
BanI	GGYRCC	1 cut(s)	688
BanII	GRGCYC	1 cut(s)	197
BbsI	GAAGAC	1 cut(s)	430
BbvI	GCAGC	4 cut(s)	69, 246, 519, 919
BccI	CCATC	3 cut(s)	619, 868, 877
BceAI	ACGGC	2 cut(s)	121, 554
BcgI	CGANNNNNNTGC	4 cut(s)	241, 275, 514, 548
BcnI	CCSGG	4 cut(s)	272, 443, 495, 575
BcoDI	GTCTC	2 cut(s)	88, 247
BglI	GCCNNNNNGGC	2 cut(s)	495, 575
BlpI	GCTNAGC	1 cut(s)	68
Bme1390I	CCNGG	4 cut(s)	272, 443, 495, 575
Bme18I	GGWCC	2 cut(s)	180, 460
BmeRI	GACNNNNNGTC	1 cut(s)	936
BmeT110I	CYCGRG	5 cut(s)	176, 190, 218, 250, 593
BmgBI	CACGTC	1 cut(s)	619
BmgT120I	GGNCC	2 cut(s)	180, 460
BmiI	GGNNCC	3 cut(s)	181, 462, 690
BmrFI	CCNGG	4 cut(s)	272, 443, 495, 575
BpiI	GAAGAC	1 cut(s)	430
Bpu1102I	GCTNAGC	1 cut(s)	68
BpuMI	CCSGG	4 cut(s)	272, 443, 495, 575
BsaHI	GRCGYC	1 cut(s)	312
BsaI	GGTCTC	1 cut(s)	247
BsaJI	CCNNGG	2 cut(s)	592, 695
BsaWI	WCCGGW	1 cut(s)	471
BsaXI	ACNNNNNCTCC	4 cut(s)	29, 59, 821, 851
Bsc4I	CCNNNNNNNGG	1 cut(s)	497
Bse118I	RCCGGY	1 cut(s)	471
Bse1I	ACTGG	1 cut(s)	853
Bse3DI	GCAATG	1 cut(s)	865
BseDI	CCNNGG	2 cut(s)	592, 695
BseLI	CCNNNNNNNGG	1 cut(s)	497
BseMI	GCAATG	1 cut(s)	865
BseMII	CTCAG	3 cut(s)	59, 723, 933
BseNI	ACTGG	1 cut(s)	853
BseRI	GAGGAG	5 cut(s)	101, 552, 572, 749, 770
BseXI	GCAGC	4 cut(s)	69, 246, 519, 919
BseYI	CCCAGC	4 cut(s)	204, 766, 782, 803
Bsh1236I	CGCG	3 cut(s)	65, 633, 697
BshFI	GGCC	2 cut(s)	108, 591
BshNI	GGYRCC	1 cut(s)	688
BshTI	ACCGGT	1 cut(s)	471
BsiHKCI	CYCGRG	5 cut(s)	176, 190, 218, 250, 593
BsiSI	CCGG	5 cut(s)	272, 442, 472, 494, 574
BsiWI	CGTACG	1 cut(s)	426
BslFI	GGGAC	2 cut(s)	187, 931
BslI	CCNNNNNNNGG	1 cut(s)	497
BsmAI	GTCTC	2 cut(s)	88, 247
BsmBI	CGTCTC	1 cut(s)	88
BsmFI	GGGAC	2 cut(s)	187, 931
BsnI	GGCC	2 cut(s)	108, 591
Bso31I	GGTCTC	1 cut(s)	247
BsoBI	CYCGRG	5 cut(s)	176, 190, 218, 250, 593
Bsp1286I	GDGCHC	1 cut(s)	197
Bsp143I	GATC	1 cut(s)	628
Bsp1720I	GCTNAGC	1 cut(s)	68
BspANI	GGCC	2 cut(s)	108, 591
BspCNI	CTCAG	3 cut(s)	60, 724, 934
BspFNI	CGCG	3 cut(s)	65, 633, 697
BspLI	GGNNCC	3 cut(s)	181, 462, 690
BspPI	GGATC	1 cut(s)	636
BspT107I	GGYRCC	1 cut(s)	688
BspTNI	GGTCTC	1 cut(s)	247
BsrDI	GCAATG	1 cut(s)	865
BsrFI	RCCGGY	1 cut(s)	471
BsrI	ACTGG	1 cut(s)	853
BssAI	RCCGGY	1 cut(s)	471
BssECI	CCNNGG	2 cut(s)	592, 695
BssMI	GATC	1 cut(s)	628
BssNI	GRCGYC	1 cut(s)	312
Bst4CI	ACNGT	1 cut(s)	925
Bst6I	CTCTTC	1 cut(s)	639
BstACI	GRCGYC	1 cut(s)	312
BstC8I	GCNNGC	1 cut(s)	491
BstDEI	CTNAG	4 cut(s)	68, 364, 732, 942
BstDSI	CCRYGG	1 cut(s)	695
BstFNI	CGCG	3 cut(s)	65, 633, 697
BstHHI	GCGC	2 cut(s)	67, 139
BstKTI	GATC	1 cut(s)	631
BstMAI	GTCTC	2 cut(s)	88, 247
BstMBI	GATC	1 cut(s)	628
BstMWI	GCNNNNNNNGC	8 cut(s)	136, 214, 340, 343, 495, 541, 575, 855
BstSCI	CCNGG	4 cut(s)	270, 441, 493, 573
BstUI	CGCG	3 cut(s)	65, 633, 697
BstV1I	GCAGC	4 cut(s)	69, 246, 519, 919
BstV2I	GAAGAC	1 cut(s)	430
BstXI	CCANNNNNNTGG	1 cut(s)	860
BsuRI	GGCC	2 cut(s)	108, 591
BtgI	CCRYGG	1 cut(s)	695
BtrI	CACGTC	1 cut(s)	619
BtsIMutI	CAGTG	1 cut(s)	860
Cac8I	GCNNGC	1 cut(s)	491
CfoI	GCGC	2 cut(s)	67, 139
Cfr10I	RCCGGY	1 cut(s)	471
Cfr13I	GGNCC	2 cut(s)	180, 460
Cfr42I	CCGCGG	1 cut(s)	698
CseI	GACGC	3 cut(s)	320, 424, 538
Csp6I	GTAC	1 cut(s)	427
CspAI	ACCGGT	1 cut(s)	471
CviAII	CATG	1 cut(s)	288
CviQI	GTAC	1 cut(s)	427
DdeI	CTNAG	4 cut(s)	68, 364, 732, 942
DpnI	GATC	1 cut(s)	630
DpnII	GATC	1 cut(s)	628
DrdI	GACNNNNNNGTC	1 cut(s)	275
DriI	GACNNNNNGTC	1 cut(s)	936
DseDI	GACNNNNNNGTC	1 cut(s)	275
Eam1104I	CTCTTC	1 cut(s)	639
Eam1105I	GACNNNNNGTC	1 cut(s)	936
EarI	CTCTTC	1 cut(s)	639
EciI	GGCGGA	3 cut(s)	330, 513, 562
Eco147I	AGGCCT	1 cut(s)	591
Eco24I	GRGCYC	1 cut(s)	197
Eco31I	GGTCTC	1 cut(s)	247
Eco47I	GGWCC	2 cut(s)	180, 460
Eco57I	CTGAAG	2 cut(s)	307, 764
Eco88I	CYCGRG	5 cut(s)	176, 190, 218, 250, 593
EcoO109I	RGGNCCY	1 cut(s)	460
EcoT38I	GRGCYC	1 cut(s)	197
Esp3I	CGTCTC	1 cut(s)	88
FaeI	CATG	1 cut(s)	291
FaiI	YATR	5 cut(s)	289, 299, 487, 720, 722
FalI	AAGNNNNNCTT	2 cut(s)	224, 256
FaqI	GGGAC	2 cut(s)	187, 931
FatI	CATG	1 cut(s)	287
FauI	CCCGC	5 cut(s)	132, 498, 626, 690, 895
FblI	GTMKAC	2 cut(s)	152, 519
FriOI	GRGCYC	1 cut(s)	197
GlaI	GCGC	2 cut(s)	66, 138
GsaI	CCCAGC	4 cut(s)	208, 770, 786, 807
HaeIII	GGCC	2 cut(s)	108, 591
HapII	CCGG	5 cut(s)	272, 442, 472, 494, 574
HgaI	GACGC	3 cut(s)	320, 424, 538
HhaI	GCGC	2 cut(s)	67, 139
Hin1I	GRCGYC	1 cut(s)	312
Hin1II	CATG	1 cut(s)	291
Hin6I	GCGC	2 cut(s)	65, 137
HinP1I	GCGC	2 cut(s)	65, 137
HincII	GTYRAC	1 cut(s)	153
HindII	GTYRAC	1 cut(s)	153
HinfI	GANTC	5 cut(s)	168, 221, 327, 403, 775
HpaII	CCGG	5 cut(s)	272, 442, 472, 494, 574
HphI	GGTGA	5 cut(s)	457, 610, 782, 898, 940
Hpy166II	GTNNAC	3 cut(s)	153, 448, 520
Hpy188I	TCNGA	6 cut(s)	226, 247, 268, 326, 641, 733
Hpy188III	TCNNGA	5 cut(s)	119, 165, 190, 478, 941
Hpy8I	GTNNAC	3 cut(s)	153, 448, 520
Hpy99I	CGWCG	5 cut(s)	41, 154, 529, 532, 925
HpyAV	CCTTC	9 cut(s)	171, 273, 364, 451, 581, 658, 670, 703, 812
HpyCH4III	ACNGT	1 cut(s)	925
HpyCH4IV	ACGT	1 cut(s)	618
HpyCH4V	TGCA	2 cut(s)	564, 858
HpyF10VI	GCNNNNNNNGC	8 cut(s)	136, 214, 340, 343, 495, 541, 575, 855
HpyF3I	CTNAG	4 cut(s)	68, 364, 732, 942
HpySE526I	ACGT	1 cut(s)	618
Hsp92I	GRCGYC	1 cut(s)	312
Hsp92II	CATG	1 cut(s)	291
HspAI	GCGC	2 cut(s)	65, 137
KspI	CCGCGG	1 cut(s)	698
Kzo9I	GATC	1 cut(s)	628
LmnI	GCTCC	2 cut(s)	65, 292
Lsp1109I	GCAGC	4 cut(s)	69, 246, 519, 919
MaeII	ACGT	1 cut(s)	618
MaeIII	GTNAC	2 cut(s)	614, 928
MalI	GATC	1 cut(s)	630
MboI	GATC	1 cut(s)	628
MboII	GAAGA	5 cut(s)	6, 16, 430, 656, 757
MhlI	GDGCHC	1 cut(s)	197
MluCI	AATT	2 cut(s)	411, 975
MlyI	GAGTC	1 cut(s)	230
MmeI	TCCRAC	3 cut(s)	270, 291, 420
MseI	TTAA	1 cut(s)	282
MspA1I	CMGCKG	3 cut(s)	259, 697, 910
MspI	CCGG	5 cut(s)	272, 442, 472, 494, 574
MspR9I	CCNGG	4 cut(s)	272, 443, 495, 575
MvnI	CGCG	3 cut(s)	65, 633, 697
MwoI	GCNNNNNNNGC	8 cut(s)	136, 214, 340, 343, 495, 541, 575, 855
NciI	CCSGG	4 cut(s)	272, 443, 495, 575
NdeII	GATC	1 cut(s)	628
NlaIII	CATG	1 cut(s)	291
NlaIV	GGNNCC	3 cut(s)	181, 462, 690
NmeAIII	GCCGAG	1 cut(s)	33
NmuCI	GTSAC	2 cut(s)	614, 928
PaeR7I	CTCGAG	1 cut(s)	218
PceI	AGGCCT	1 cut(s)	591
PcsI	WCGNNNNNNNCGW	2 cut(s)	615, 929
PfeI	GAWTC	4 cut(s)	168, 327, 403, 775
Pfl23II	CGTACG	1 cut(s)	426
PinAI	ACCGGT	1 cut(s)	471
PleI	GAGTC	1 cut(s)	229
PpsI	GAGTC	1 cut(s)	229
PpuMI	RGGWCCY	1 cut(s)	460
Psp5II	RGGWCCY	1 cut(s)	460
PspFI	CCCAGC	4 cut(s)	204, 766, 782, 803
PspLI	CGTACG	1 cut(s)	426
PspN4I	GGNNCC	3 cut(s)	181, 462, 690
PspPI	GGNCC	2 cut(s)	180, 460
PspPPI	RGGWCCY	1 cut(s)	460
PspXI	VCTCGAGB	1 cut(s)	218
RsaI	GTAC	1 cut(s)	428
RsaNI	GTAC	1 cut(s)	427
SacII	CCGCGG	1 cut(s)	698
SalI	GTCGAC	1 cut(s)	151
SaqAI	TTAA	1 cut(s)	282
Sau3AI	GATC	1 cut(s)	628
Sau96I	GGNCC	2 cut(s)	180, 460
SchI	GAGTC	1 cut(s)	230
ScrFI	CCNGG	4 cut(s)	272, 443, 495, 575
SduI	GDGCHC	1 cut(s)	197
Sfr274I	CTCGAG	1 cut(s)	218
Sfr303I	CCGCGG	1 cut(s)	698
SgrBI	CCGCGG	1 cut(s)	698
SinI	GGWCC	2 cut(s)	180, 460
SlaI	CTCGAG	1 cut(s)	218
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
Sse9I	AATT	2 cut(s)	411, 975
SseBI	AGGCCT	1 cut(s)	591
StuI	AGGCCT	1 cut(s)	591
StyD4I	CCNGG	4 cut(s)	270, 441, 493, 573
TaaI	ACNGT	1 cut(s)	925
TaiI	ACGT	1 cut(s)	621
TaqI	TCGA	7 cut(s)	120, 152, 166, 219, 477, 609, 623
TasI	AATT	2 cut(s)	411, 975
TauI	GCSGC	9 cut(s)	130, 337, 346, 547, 686, 694, 697, 729, 913
TfiI	GAWTC	4 cut(s)	168, 327, 403, 775
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TscAI	CASTG	1 cut(s)	860
TseFI	GTSAC	2 cut(s)	614, 928
TseI	GCWGC	4 cut(s)	57, 259, 532, 907
Tsp45I	GTSAC	2 cut(s)	614, 928
TspDTI	ATGAA	1 cut(s)	677
TspGWI	ACGGA	2 cut(s)	138, 414
TspRI	CASTG	1 cut(s)	860
VpaK11BI	GGWCC	2 cut(s)	180, 460
XhoI	CTCGAG	1 cut(s)	218
XmiI	GTMKAC	2 cut(s)	152, 519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.