Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0004963

Physical Location & Seq

Genomic Coordinates Forward (+)

6076728 .. 6078151

Gene Structure 1424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g10700.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGGTTGCGTTTCTTCCAATCTCTTCAACCACGACGGTGAAGACTTCTCCCAGCTCGGCAGCTCCGCCTTGAGCCACCACATCGTCTCCCTCACCTCCTCCACCTACGGCCTCCTCACCCTCGACCCTCCACCCAACTCTACCCCATCTACTCCGCTGACCCCACCTTCCCGATTCACATTCGGCTCCATTTTCCCGACCTCGCTCTCCGAGCAGAAGTCGCTCTGGTCCGACCCAAAGCCGCTCCGGTCCGACCCGGAAGTCATCAACTCATGGGAGCTCATGGCTGGCCTCGATGCCGACAGCTTCAGATTCTCGCCGCTTCCTCCGCCGAAGCCGTTTTCTATCCGAACCCCGAAAACCGCGGATAAAGAGAACTCCAACCCGAACCGGGTGGGTCGGGTCAAATCCCCGCTGGACCGGTTCGAGTGGATATGCCCGCCGGGAGGAGAGAACAAGCTTGTCCTCTACACGACGTCGTTGCGAGGAGTGCGGAAGACTTTCGAGGCGTGCAATGCGGTGCGTGCGGCGGTGGAGAATCTCGGGGTGATGGTCTGCGAGCGTGACGTGTCGATGGATCGCGGGTTCAGAGAAGAGCTCAATGAATTGATGGAGGGGAAAGGGAGAGAGGCGGCGGTGCCGCCGAGGCTGTTTGTGAAGGGAAGATATGTTGGTGGATCCGAGGAGGTTTTGAAGATTGTGGAGGAGGGTTTGTTGGGGGAGATTCTAGAAGGCCTGCCCAAGAAGCGGGCCGGGTCGGTTTGCGAGGGGTGCGGGGAAGCGAAGTTCTTGCCGTGTTTTCAGTGCAATGGGAGCTCGAAGATGGTGCTGGTGGTGAAGGAAGAGGCGGTGGGGGTGAGAGGAGGAGGAGGGACGGTGGTGGTGAGGTGTCCTGAGTGTAATGAGAATGGTTTGGTGCTTTGCCCAATTTGTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glutaredoxin

Protein Analysis

313

Amino Acids

33.78

Weight (kDa)

5.82

Isoelectric Point (pI)

40.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glutaredoxin	PF00462	155 - 224	6.6e-09	Glutaredoxin
GRXCR1-2_C	PF23733	255 - 312	1.2e-16	GRXCR1/2, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32760 AT4G10630
fragaria_vesca	FvH4_5g10700
malus_domestica	MD06G1121200.v1.1 MD09G1197100.v1.1 MD14G1137800.v1.1
prunus_persica	Prupe.5G131800_v2.0.a1
pyrus_communis	pycom06g11250 pycom14g11300
rosa_chinensis	RchiOBHm_Chr1g0342161 RchiOBHm_Chr7g0187441
rosa_laevigata	RLG00000001600 RLG00000004781 RLG00000009467
rosa_multiflora	Rmu_sc0001230.1_g000015 Rmu_sc0003363.1_g000014 Rmu_sc0009146.1_g000005
rosa_roxburghii	Rroxscaffold_3G00267420
rosa_rugosa	Rorug06G0355300 Rorug06G0481600
rosa_samantha	Rh1CG026900 Rh5DG426300 Rh7AG086100 Rh7BG087600 Rh7CG087000 Rh7DG088600 Rh7DG307400 Rh7DG445500
rosa_wichuraiana	Rw2G033920 Rw7G007600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	260
AatII	GACGTC	1 cut(s)	479
AccB1I	GGYRCC	1 cut(s)	637
AccBSI	CCGCTC	1 cut(s)	244
AccII	CGCG	2 cut(s)	365, 582
AclWI	GGATC	3 cut(s)	585, 672, 685
AcuI	CTGAAG	1 cut(s)	292
AcyI	GRCGYC	1 cut(s)	476
AfiI	CCNNNNNNNGG	3 cut(s)	391, 446, 747
AflIII	ACRYGT	1 cut(s)	567
AgeI	ACCGGT	1 cut(s)	420
AgsI	TTSAA	2 cut(s)	28, 694
AjiI	CACGTC	1 cut(s)	568
AleI	CACNNNNGTG	1 cut(s)	36
AloI	GAACNNNNNNTCC	4 cut(s)	569, 601, 770, 802
AluBI	AGCT	8 cut(s)	55, 63, 280, 306, 460, 598, 816, 936
AluI	AGCT	8 cut(s)	55, 63, 280, 306, 460, 598, 816, 936
Alw21I	GWGCWC	3 cut(s)	282, 600, 818
Alw26I	GTCTC	1 cut(s)	91
AlwI	GGATC	3 cut(s)	585, 672, 685
Ama87I	CYCGRG	1 cut(s)	542
AoxI	GGCC	4 cut(s)	109, 289, 733, 750
ApeKI	GCWGC	1 cut(s)	60
AsiGI	ACCGGT	1 cut(s)	420
Asp700I	GAANNNNTTC	1 cut(s)	500
AspS9I	GGNCC	4 cut(s)	228, 249, 418, 750
AsuC2I	CCSGG	4 cut(s)	257, 392, 444, 754
AsuHPI	GGTGA	7 cut(s)	50, 85, 109, 559, 847, 868, 895
AvaI	CYCGRG	1 cut(s)	542
AvaII	GGWCC	3 cut(s)	228, 249, 418
BamHI	GGATCC	1 cut(s)	677
BanI	GGYRCC	1 cut(s)	637
BanII	GRGCYC	3 cut(s)	282, 600, 818
BbsI	GAAGAC	2 cut(s)	48, 503
Bbv12I	GWGCWC	3 cut(s)	282, 600, 818
BbvI	GCAGC	1 cut(s)	72
BccI	CCATC	5 cut(s)	154, 544, 568, 604, 817
BceAI	ACGGC	3 cut(s)	124, 322, 778
BcgI	CGANNNNNNTGC	6 cut(s)	463, 497, 772, 806, 808, 842
BcnI	CCSGG	4 cut(s)	257, 392, 444, 754
BcoDI	GTCTC	1 cut(s)	91
BfaI	CTAG	1 cut(s)	728
BglI	GCCNNNNNGGC	1 cut(s)	646
BisI	GCNGC	6 cut(s)	61, 242, 320, 528, 633, 641
BlsI	GCNGC	6 cut(s)	62, 243, 321, 529, 634, 642
Bme1390I	CCNGG	4 cut(s)	257, 392, 444, 754
Bme18I	GGWCC	3 cut(s)	228, 249, 418
BmeT110I	CYCGRG	1 cut(s)	542
BmgBI	CACGTC	1 cut(s)	568
BmgT120I	GGNCC	4 cut(s)	228, 249, 418, 750
BmiI	GGNNCC	3 cut(s)	187, 639, 679
BmrFI	CCNGG	4 cut(s)	257, 392, 444, 754
BmsI	GCATC	1 cut(s)	286
BpiI	GAAGAC	2 cut(s)	48, 503
BplI	GAGNNNNNCTC	2 cut(s)	582, 614
BpuEI	CTTGAG	1 cut(s)	91
BpuMI	CCSGG	4 cut(s)	257, 392, 444, 754
BsaHI	GRCGYC	1 cut(s)	476
BsaJI	CCNNGG	3 cut(s)	363, 644, 681
BsaWI	WCCGGW	2 cut(s)	246, 420
BsaXI	ACNNNNNCTCC	6 cut(s)	71, 101, 698, 728, 861, 891
Bsc4I	CCNNNNNNNGG	3 cut(s)	391, 446, 747
Bse118I	RCCGGY	1 cut(s)	420
Bse3DI	GCAATG	2 cut(s)	520, 814
BseDI	CCNNGG	3 cut(s)	363, 644, 681
BseLI	CCNNNNNNNGG	3 cut(s)	391, 446, 747
BseMI	GCAATG	2 cut(s)	520, 814
BseMII	CTCAG	1 cut(s)	885
BseRI	GAGGAG	9 cut(s)	88, 104, 462, 501, 698, 719, 876, 879, 882
BseXI	GCAGC	1 cut(s)	72
BseYI	CCCAGC	1 cut(s)	51
Bsh1236I	CGCG	2 cut(s)	365, 582
BshFI	GGCC	4 cut(s)	111, 291, 735, 752
BshNI	GGYRCC	1 cut(s)	637
BshTI	ACCGGT	1 cut(s)	420
BsiHKAI	GWGCWC	3 cut(s)	282, 600, 818
BsiHKCI	CYCGRG	1 cut(s)	542
BsiSI	CCGG	6 cut(s)	247, 257, 391, 421, 443, 753
BslFI	GGGAC	1 cut(s)	886
BslI	CCNNNNNNNGG	3 cut(s)	391, 446, 747
BsmAI	GTCTC	1 cut(s)	91
BsmBI	CGTCTC	1 cut(s)	91
BsmFI	GGGAC	1 cut(s)	886
BsnI	GGCC	4 cut(s)	111, 291, 735, 752
BsoBI	CYCGRG	1 cut(s)	542
Bsp1286I	GDGCHC	3 cut(s)	282, 600, 818
Bsp143I	GATC	2 cut(s)	577, 677
BspANI	GGCC	4 cut(s)	111, 291, 735, 752
BspCNI	CTCAG	1 cut(s)	886
BspFNI	CGCG	2 cut(s)	365, 582
BspLI	GGNNCC	3 cut(s)	187, 639, 679
BspPI	GGATC	3 cut(s)	585, 672, 685
BspQI	GCTCTTC	1 cut(s)	588
BspT107I	GGYRCC	1 cut(s)	637
BsrBI	CCGCTC	1 cut(s)	244
BsrDI	GCAATG	2 cut(s)	520, 814
BsrFI	RCCGGY	1 cut(s)	420
BssAI	RCCGGY	1 cut(s)	420
BssECI	CCNNGG	3 cut(s)	363, 644, 681
BssMI	GATC	2 cut(s)	577, 677
BssNI	GRCGYC	1 cut(s)	476
Bst4CI	ACNGT	2 cut(s)	38, 877
Bst6I	CTCTTC	3 cut(s)	29, 588, 837
BstACI	GRCGYC	1 cut(s)	476
BstC8I	GCNNGC	7 cut(s)	289, 440, 511, 525, 560, 737, 750
BstDEI	CTNAG	1 cut(s)	894
BstDSI	CCRYGG	1 cut(s)	363
BstFNI	CGCG	2 cut(s)	365, 582
BstKTI	GATC	2 cut(s)	580, 680
BstMAI	GTCTC	1 cut(s)	91
BstMBI	GATC	2 cut(s)	577, 677
BstSCI	CCNGG	4 cut(s)	255, 390, 442, 752
BstUI	CGCG	2 cut(s)	365, 582
BstV1I	GCAGC	1 cut(s)	72
BstV2I	GAAGAC	2 cut(s)	48, 503
BstX2I	RGATCY	1 cut(s)	677
BstYI	RGATCY	1 cut(s)	677
BsuRI	GGCC	4 cut(s)	111, 291, 735, 752
BtgI	CCRYGG	1 cut(s)	363
BtrI	CACGTC	1 cut(s)	568
BtsIMutI	CAGTG	1 cut(s)	809
Cac8I	GCNNGC	7 cut(s)	289, 440, 511, 525, 560, 737, 750
Cfr10I	RCCGGY	1 cut(s)	420
Cfr13I	GGNCC	4 cut(s)	228, 249, 418, 750
Cfr42I	CCGCGG	1 cut(s)	366
CpoI	CGGWCCG	1 cut(s)	249
CspAI	ACCGGT	1 cut(s)	420
CspI	CGGWCCG	1 cut(s)	249
CviAII	CATG	2 cut(s)	273, 283
DdeI	CTNAG	1 cut(s)	894
DpnI	GATC	2 cut(s)	579, 679
DpnII	GATC	2 cut(s)	577, 677
DrdI	GACNNNNNNGTC	1 cut(s)	260
DseDI	GACNNNNNNGTC	1 cut(s)	260
Eam1104I	CTCTTC	3 cut(s)	29, 588, 837
EarI	CTCTTC	3 cut(s)	29, 588, 837
EciI	GGCGGA	2 cut(s)	55, 318
Ecl136II	GAGCTC	3 cut(s)	280, 598, 816
Eco147I	AGGCCT	1 cut(s)	735
Eco24I	GRGCYC	3 cut(s)	282, 600, 818
Eco47I	GGWCC	3 cut(s)	228, 249, 418
Eco53kI	GAGCTC	3 cut(s)	280, 598, 816
Eco57I	CTGAAG	1 cut(s)	292
Eco88I	CYCGRG	1 cut(s)	542
EcoICRI	GAGCTC	3 cut(s)	280, 598, 816
EcoT38I	GRGCYC	3 cut(s)	282, 600, 818
Esp3I	CGTCTC	1 cut(s)	91
FaeI	CATG	2 cut(s)	276, 286
FaiI	YATR	4 cut(s)	274, 284, 436, 669
FaqI	GGGAC	1 cut(s)	886
FatI	CATG	2 cut(s)	272, 282
FauI	CCCGC	5 cut(s)	420, 447, 575, 741, 767
Fnu4HI	GCNGC	6 cut(s)	61, 242, 320, 528, 633, 641
FriOI	GRGCYC	3 cut(s)	282, 600, 818
Fsp4HI	GCNGC	6 cut(s)	61, 242, 320, 528, 633, 641
FspBI	CTAG	1 cut(s)	728
GluI	GCNGC	6 cut(s)	61, 242, 320, 528, 633, 641
GsaI	CCCAGC	1 cut(s)	55
HaeIII	GGCC	4 cut(s)	111, 291, 735, 752
HapII	CCGG	6 cut(s)	247, 257, 391, 421, 443, 753
Hin1I	GRCGYC	1 cut(s)	476
Hin1II	CATG	2 cut(s)	276, 286
HindIII	AAGCTT	1 cut(s)	458
HinfI	GANTC	4 cut(s)	174, 312, 538, 724
HpaII	CCGG	6 cut(s)	247, 257, 391, 421, 443, 753
HphI	GGTGA	7 cut(s)	50, 85, 109, 559, 847, 868, 895
Hpy188I	TCNGA	7 cut(s)	211, 232, 253, 311, 350, 590, 682
Hpy188III	TCNNGA	4 cut(s)	171, 196, 728, 893
Hpy99I	CGWCG	3 cut(s)	38, 478, 481
HpyAV	CCTTC	4 cut(s)	177, 652, 725, 832
HpyCH4III	ACNGT	2 cut(s)	38, 877
HpyCH4IV	ACGT	2 cut(s)	476, 567
HpyCH4V	TGCA	2 cut(s)	513, 807
HpyF3I	CTNAG	1 cut(s)	894
HpySE526I	ACGT	2 cut(s)	476, 567
Hsp92I	GRCGYC	1 cut(s)	476
Hsp92II	CATG	2 cut(s)	276, 286
KspI	CCGCGG	1 cut(s)	366
Kzo9I	GATC	2 cut(s)	577, 677
LguI	GCTCTTC	1 cut(s)	588
LmnI	GCTCC	5 cut(s)	68, 191, 249, 277, 813
Lsp1109I	GCAGC	1 cut(s)	72
LweI	GCATC	1 cut(s)	286
MaeI	CTAG	1 cut(s)	728
MaeII	ACGT	2 cut(s)	476, 567
MaeIII	GTNAC	1 cut(s)	563
MalI	GATC	2 cut(s)	579, 679
MbiI	CCGCTC	1 cut(s)	244
MboI	GATC	2 cut(s)	577, 677
MboII	GAAGA	9 cut(s)	6, 16, 53, 508, 605, 675, 706, 832, 854
MflI	RGATCY	1 cut(s)	677
MhlI	GDGCHC	3 cut(s)	282, 600, 818
MluCI	AATT	2 cut(s)	605, 927
MmeI	TCCRAC	3 cut(s)	255, 276, 405
MroXI	GAANNNNTTC	1 cut(s)	500
MslI	CAYNNNNRTG	1 cut(s)	36
MspA1I	CMGCKG	3 cut(s)	157, 365, 415
MspI	CCGG	6 cut(s)	247, 257, 391, 421, 443, 753
MspR9I	CCNGG	4 cut(s)	257, 392, 444, 754
MvnI	CGCG	2 cut(s)	365, 582
NciI	CCSGG	4 cut(s)	257, 392, 444, 754
NdeII	GATC	2 cut(s)	577, 677
NlaIII	CATG	2 cut(s)	276, 286
NlaIV	GGNNCC	3 cut(s)	187, 639, 679
NmeAIII	GCCGAG	2 cut(s)	36, 669
NmuCI	GTSAC	1 cut(s)	563
OliI	CACNNNNGTG	1 cut(s)	36
PceI	AGGCCT	1 cut(s)	735
PciSI	GCTCTTC	1 cut(s)	588
PdmI	GAANNNNTTC	1 cut(s)	500
PfeI	GAWTC	4 cut(s)	174, 312, 538, 724
PinAI	ACCGGT	1 cut(s)	420
PkrI	GCNGC	6 cut(s)	62, 243, 321, 529, 634, 642
Psp124BI	GAGCTC	3 cut(s)	282, 600, 818
PspFI	CCCAGC	1 cut(s)	51
PspN4I	GGNNCC	3 cut(s)	187, 639, 679
PspPI	GGNCC	4 cut(s)	228, 249, 418, 750
PsuI	RGATCY	1 cut(s)	677
RseI	CAYNNNNRTG	1 cut(s)	36
Rsr2I	CGGWCCG	1 cut(s)	249
RsrII	CGGWCCG	1 cut(s)	249
SacI	GAGCTC	3 cut(s)	282, 600, 818
SacII	CCGCGG	1 cut(s)	366
SapI	GCTCTTC	1 cut(s)	588
SatI	GCNGC	6 cut(s)	61, 242, 320, 528, 633, 641
Sau3AI	GATC	2 cut(s)	577, 677
Sau96I	GGNCC	4 cut(s)	228, 249, 418, 750
ScrFI	CCNGG	4 cut(s)	257, 392, 444, 754
SduI	GDGCHC	3 cut(s)	282, 600, 818
SfaNI	GCATC	1 cut(s)	286
Sfr303I	CCGCGG	1 cut(s)	366
SgrBI	CCGCGG	1 cut(s)	366
SinI	GGWCC	3 cut(s)	228, 249, 418
SmiMI	CAYNNNNRTG	1 cut(s)	36
SmlI	CTYRAG	1 cut(s)	70
SmoI	CTYRAG	1 cut(s)	70
Sse9I	AATT	2 cut(s)	605, 927
SseBI	AGGCCT	1 cut(s)	735
SspMI	CTAG	1 cut(s)	728
SstI	GAGCTC	3 cut(s)	282, 600, 818
StuI	AGGCCT	1 cut(s)	735
StyD4I	CCNGG	4 cut(s)	255, 390, 442, 752
TaaI	ACNGT	2 cut(s)	38, 877
TaiI	ACGT	2 cut(s)	479, 570
TaqI	TCGA	6 cut(s)	123, 294, 426, 504, 572, 818
TasI	AATT	2 cut(s)	605, 927
TauI	GCSGC	5 cut(s)	244, 322, 530, 635, 643
TfiI	GAWTC	4 cut(s)	174, 312, 538, 724
TscAI	CASTG	1 cut(s)	809
TseFI	GTSAC	1 cut(s)	563
TseI	GCWGC	1 cut(s)	60
Tsp45I	GTSAC	1 cut(s)	563
TspDTI	ATGAA	1 cut(s)	618
TspRI	CASTG	1 cut(s)	809
VpaK11BI	GGWCC	3 cut(s)	228, 249, 418
XbaI	TCTAGA	1 cut(s)	727
XmnI	GAANNNNTTC	1 cut(s)	500
XspI	CTAG	1 cut(s)	728
ZraI	GACGTC	1 cut(s)	477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.