RchiOBHm_Chr1g0342161

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0004963
Physical Location & Seq
Forward (+)
34102054 .. 34102392
339 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56881

Sequence Viewer

Length: 339 bp
ATGGAGGGGAAAGGCAGAGACGCGGCGGTGCCGCGGAGGTTGTTTTTGAAGGGAAGATATATGGGTGGATCCGAGGAGGTGTTGAAGATTGTGGAGGAGGGGTTGTTGGGGGAGATTCTAGAAGGTCTACCCAAGAAGCGGGTCGGGTCGGTTTGCGAAGGGTGCGGAGAAGCGAAATTCTTGCCGTGTTTTCAGTGCAATGGGAGTTCGAAGATGGTGCTGGTGGTGAAAGAAGACGAGGTGGTGGTGGGGCAGAGGCAGGGAGGCGGCGGCACGGTGGTCGTGAGGTGTCCCGAGTGTAATGAGAATGGGTTGGTGCTCTGCCCAATTTGTAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

112

Amino Acids

11.93

Weight (kDa)

6.31

Isoelectric Point (pI)

44.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRXCR1-2_C PF23733 52 - 112 1.6e-17 GRXCR1/2, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 28
AccI GTMKAC 1 cut(s) 127
AccII CGCG 2 cut(s) 23, 34
AciI CCGC 8 cut(s) 23, 26, 32, 34, 139, 165, 267, 270
AclWI GGATC 2 cut(s) 63, 76
AcsI RAATTY 1 cut(s) 176
AfiI CCNNNNNNNGG 1 cut(s) 138
AgsI TTSAA 2 cut(s) 49, 85
AluBI AGCT 1 cut(s) 336
AluI AGCT 1 cut(s) 336
Alw21I GWGCWC 1 cut(s) 321
Alw26I GTCTC 1 cut(s) 12
AlwI GGATC 2 cut(s) 63, 76
Ama87I CYCGRG 1 cut(s) 293
ApoI RAATTY 1 cut(s) 176
AsuHPI GGTGA 1 cut(s) 238
AsuII TTCGAA 1 cut(s) 209
AvaI CYCGRG 1 cut(s) 293
BamHI GGATCC 1 cut(s) 68
BanI GGYRCC 1 cut(s) 28
BbsI GAAGAC 1 cut(s) 240
Bbv12I GWGCWC 1 cut(s) 321
BccI CCATC 1 cut(s) 208
BceAI ACGGC 1 cut(s) 169
BcgI CGANNNNNNTGC 6 cut(s) 163, 197, 199, 233, 262, 296
BcoDI GTCTC 1 cut(s) 12
BfaI CTAG 1 cut(s) 119
BisI GCNGC 4 cut(s) 24, 32, 268, 271
BlsI GCNGC 4 cut(s) 25, 33, 269, 272
BmeT110I CYCGRG 1 cut(s) 293
BmiI GGNNCC 2 cut(s) 30, 70
BpiI GAAGAC 1 cut(s) 240
Bpu14I TTCGAA 1 cut(s) 209
BsaJI CCNNGG 2 cut(s) 32, 72
BsaXI ACNNNNNCTCC 4 cut(s) 86, 89, 116, 119
Bsc4I CCNNNNNNNGG 1 cut(s) 138
Bse3DI GCAATG 1 cut(s) 205
BseDI CCNNGG 2 cut(s) 32, 72
BseLI CCNNNNNNNGG 1 cut(s) 138
BseMI GCAATG 1 cut(s) 205
BseRI GAGGAG 2 cut(s) 89, 110
Bsh1236I CGCG 2 cut(s) 23, 34
BshNI GGYRCC 1 cut(s) 28
BsiHKAI GWGCWC 1 cut(s) 321
BsiHKCI CYCGRG 1 cut(s) 293
BslFI GGGAC 1 cut(s) 276
BslI CCNNNNNNNGG 1 cut(s) 138
BsmAI GTCTC 1 cut(s) 12
BsmBI CGTCTC 1 cut(s) 12
BsmFI GGGAC 1 cut(s) 276
BsoBI CYCGRG 1 cut(s) 293
Bsp119I TTCGAA 1 cut(s) 209
Bsp1286I GDGCHC 1 cut(s) 321
Bsp143I GATC 1 cut(s) 68
BspACI CCGC 8 cut(s) 23, 26, 32, 34, 139, 165, 267, 270
BspFNI CGCG 2 cut(s) 23, 34
BspLI GGNNCC 2 cut(s) 30, 70
BspPI GGATC 2 cut(s) 63, 76
BspT104I TTCGAA 1 cut(s) 209
BspT107I GGYRCC 1 cut(s) 28
BsrDI GCAATG 1 cut(s) 205
BssECI CCNNGG 2 cut(s) 32, 72
BssMI GATC 1 cut(s) 68
Bst4CI ACNGT 1 cut(s) 277
BstBI TTCGAA 1 cut(s) 209
BstDSI CCRYGG 1 cut(s) 32
BstFNI CGCG 2 cut(s) 23, 34
BstKTI GATC 1 cut(s) 71
BstMAI GTCTC 1 cut(s) 12
BstMBI GATC 1 cut(s) 68
BstMWI GCNNNNNNNGC 1 cut(s) 162
BstUI CGCG 2 cut(s) 23, 34
BstV2I GAAGAC 1 cut(s) 240
BstX2I RGATCY 1 cut(s) 68
BstYI RGATCY 1 cut(s) 68
BtgI CCRYGG 1 cut(s) 32
BtsIMutI CAGTG 1 cut(s) 200
Cfr42I CCGCGG 1 cut(s) 35
CseI GACGC 1 cut(s) 29
CviJI RGCY 1 cut(s) 336
CviKI_1 RGCY 1 cut(s) 336
DpnI GATC 1 cut(s) 70
DpnII GATC 1 cut(s) 68
Eco88I CYCGRG 1 cut(s) 293
Esp3I CGTCTC 1 cut(s) 12
FaiI YATR 2 cut(s) 60, 62
FaqI GGGAC 1 cut(s) 276
FauI CCCGC 1 cut(s) 132
FblI GTMKAC 1 cut(s) 127
Fnu4HI GCNGC 4 cut(s) 24, 32, 268, 271
Fsp4HI GCNGC 4 cut(s) 24, 32, 268, 271
FspBI CTAG 1 cut(s) 119
GluI GCNGC 4 cut(s) 24, 32, 268, 271
HgaI GACGC 1 cut(s) 29
HinfI GANTC 1 cut(s) 115
HphI GGTGA 1 cut(s) 238
Hpy166II GTNNAC 1 cut(s) 128
Hpy188I TCNGA 1 cut(s) 73
Hpy188III TCNNGA 3 cut(s) 119, 283, 293
Hpy8I GTNNAC 1 cut(s) 128
HpyAV CCTTC 3 cut(s) 43, 116, 152
HpyCH4III ACNGT 1 cut(s) 277
HpyCH4V TGCA 1 cut(s) 198
HpyF10VI GCNNNNNNNGC 1 cut(s) 162
KspI CCGCGG 1 cut(s) 35
Kzo9I GATC 1 cut(s) 68
LpnPI CCDG 2 cut(s) 206, 245
MaeI CTAG 1 cut(s) 119
MalI GATC 1 cut(s) 70
MboI GATC 1 cut(s) 68
MboII GAAGA 4 cut(s) 66, 97, 223, 245
MflI RGATCY 1 cut(s) 68
MhlI GDGCHC 1 cut(s) 321
MluCI AATT 2 cut(s) 176, 327
MnlI CCTC 9 cut(s) 30, 67, 70, 88, 91, 232, 249, 257, 279
MspA1I CMGCKG 1 cut(s) 34
MvnI CGCG 2 cut(s) 23, 34
MwoI GCNNNNNNNGC 1 cut(s) 162
NdeII GATC 1 cut(s) 68
NlaIV GGNNCC 2 cut(s) 30, 70
NspV TTCGAA 1 cut(s) 209
PfeI GAWTC 1 cut(s) 115
PkrI GCNGC 4 cut(s) 25, 33, 269, 272
PspN4I GGNNCC 2 cut(s) 30, 70
PsuI RGATCY 1 cut(s) 68
SacII CCGCGG 1 cut(s) 35
SatI GCNGC 4 cut(s) 24, 32, 268, 271
Sau3AI GATC 1 cut(s) 68
SduI GDGCHC 1 cut(s) 321
SetI ASST 6 cut(s) 41, 81, 127, 243, 290, 338
Sfr303I CCGCGG 1 cut(s) 35
SfuI TTCGAA 1 cut(s) 209
SgrBI CCGCGG 1 cut(s) 35
Sse9I AATT 2 cut(s) 176, 327
SsiI CCGC 8 cut(s) 23, 26, 32, 34, 139, 165, 267, 270
SspMI CTAG 1 cut(s) 119
TaaI ACNGT 1 cut(s) 277
TaqI TCGA 1 cut(s) 209
TasI AATT 2 cut(s) 176, 327
TauI GCSGC 4 cut(s) 26, 34, 270, 273
TfiI GAWTC 1 cut(s) 115
TscAI CASTG 1 cut(s) 200
TspRI CASTG 1 cut(s) 200
XapI RAATTY 1 cut(s) 176
XbaI TCTAGA 1 cut(s) 118
XmiI GTMKAC 1 cut(s) 127
XspI CTAG 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.