Rh5DG426300

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0004963
Physical Location & Seq
Reverse (-)
68036216 .. 68036557
342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG426300.1

Sequence Viewer

Length: 342 bp
ATGGAGTATCTCGGCGTGATGGTCTGCGAGCGTAACGTGTCGATGGATCGCGGATTTCGAGAAGAGCTGAATGACTTGATGGAGGGGAAAGGCAGAGACGCGGTGGTGCCACCGAGGTTGTTTGTGAAGGGAAGATATGTGGGTGGATCTGAGGAGGTGTTGAAGATTGTGGAGGAGGGGTTGTTGGGGGAGATTCTAGAAGGTCTGCCCAAGAAGCGGGCCGGGTCGGTTTGCGAAGGGTGCGGAGAAGCGAAATTCTTACCGTGTTTGCAGTGCAATGGGAGTTCGAAGATGGTGCTGGTGGTGAAAGAAGACGAGGTGGTGGTGGGGCAGAGGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

113

Amino Acids

12.42

Weight (kDa)

5.11

Isoelectric Point (pI)

34.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRXCR1-2_C PF23733 78 - 100 3.1e-08 GRXCR1/2, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 106
AccII CGCG 2 cut(s) 51, 101
AciI CCGC 4 cut(s) 51, 101, 217, 243
AclWI GGATC 2 cut(s) 54, 154
AcsI RAATTY 1 cut(s) 254
AfiI CCNNNNNNNGG 1 cut(s) 216
AflIII ACRYGT 1 cut(s) 36
AgsI TTSAA 1 cut(s) 163
AluBI AGCT 1 cut(s) 67
AluI AGCT 1 cut(s) 67
Alw26I GTCTC 1 cut(s) 90
AlwI GGATC 2 cut(s) 54, 154
AoxI GGCC 1 cut(s) 219
ApoI RAATTY 1 cut(s) 254
AspS9I GGNCC 1 cut(s) 219
AsuC2I CCSGG 1 cut(s) 223
AsuHPI GGTGA 1 cut(s) 316
AsuII TTCGAA 1 cut(s) 287
BanI GGYRCC 1 cut(s) 106
BbsI GAAGAC 1 cut(s) 318
BccI CCATC 4 cut(s) 13, 37, 73, 286
BcgI CGANNNNNNTGC 2 cut(s) 277, 311
BcnI CCSGG 1 cut(s) 223
BcoDI GTCTC 1 cut(s) 90
BfaI CTAG 1 cut(s) 197
Bme1390I CCNGG 1 cut(s) 223
BmgT120I GGNCC 1 cut(s) 219
BmiI GGNNCC 1 cut(s) 108
BmrFI CCNGG 1 cut(s) 223
BpiI GAAGAC 1 cut(s) 318
Bpu14I TTCGAA 1 cut(s) 287
BpuMI CCSGG 1 cut(s) 223
BsaJI CCNNGG 1 cut(s) 113
BsaXI ACNNNNNCTCC 4 cut(s) 164, 167, 194, 197
Bsc4I CCNNNNNNNGG 1 cut(s) 216
Bse3DI GCAATG 1 cut(s) 283
BseDI CCNNGG 1 cut(s) 113
BseLI CCNNNNNNNGG 1 cut(s) 216
BseMI GCAATG 1 cut(s) 283
BseMII CTCAG 1 cut(s) 141
BseRI GAGGAG 2 cut(s) 167, 188
Bsh1236I CGCG 2 cut(s) 51, 101
BshFI GGCC 1 cut(s) 221
BshNI GGYRCC 1 cut(s) 106
BsiSI CCGG 1 cut(s) 222
BslI CCNNNNNNNGG 1 cut(s) 216
BsmAI GTCTC 1 cut(s) 90
BsmBI CGTCTC 1 cut(s) 90
BsnI GGCC 1 cut(s) 221
Bsp119I TTCGAA 1 cut(s) 287
Bsp143I GATC 2 cut(s) 46, 146
BspACI CCGC 4 cut(s) 51, 101, 217, 243
BspANI GGCC 1 cut(s) 221
BspCNI CTCAG 1 cut(s) 142
BspFNI CGCG 2 cut(s) 51, 101
BspLI GGNNCC 1 cut(s) 108
BspPI GGATC 2 cut(s) 54, 154
BspQI GCTCTTC 1 cut(s) 57
BspT104I TTCGAA 1 cut(s) 287
BspT107I GGYRCC 1 cut(s) 106
BsrDI GCAATG 1 cut(s) 283
BssECI CCNNGG 1 cut(s) 113
BssMI GATC 2 cut(s) 46, 146
Bst4CI ACNGT 1 cut(s) 264
Bst6I CTCTTC 1 cut(s) 57
BstBI TTCGAA 1 cut(s) 287
BstC8I GCNNGC 2 cut(s) 29, 219
BstDEI CTNAG 1 cut(s) 150
BstFNI CGCG 2 cut(s) 51, 101
BstKTI GATC 2 cut(s) 49, 149
BstMAI GTCTC 1 cut(s) 90
BstMBI GATC 2 cut(s) 46, 146
BstMWI GCNNNNNNNGC 2 cut(s) 214, 240
BstSCI CCNGG 1 cut(s) 221
BstUI CGCG 2 cut(s) 51, 101
BstV2I GAAGAC 1 cut(s) 318
BstX2I RGATCY 1 cut(s) 146
BstYI RGATCY 1 cut(s) 146
BsuRI GGCC 1 cut(s) 221
BtsI GCAGTG 1 cut(s) 278
BtsIMutI CAGTG 1 cut(s) 278
Cac8I GCNNGC 2 cut(s) 29, 219
Cfr13I GGNCC 1 cut(s) 219
CseI GACGC 1 cut(s) 107
CspCI CAANNNNNGTGG 2 cut(s) 99, 134
CviJI RGCY 2 cut(s) 67, 221
CviKI_1 RGCY 2 cut(s) 67, 221
DdeI CTNAG 1 cut(s) 150
DpnI GATC 2 cut(s) 48, 148
DpnII GATC 2 cut(s) 46, 146
Eam1104I CTCTTC 1 cut(s) 57
EarI CTCTTC 1 cut(s) 57
Esp3I CGTCTC 1 cut(s) 90
FaiI YATR 1 cut(s) 138
FauI CCCGC 1 cut(s) 210
FspBI CTAG 1 cut(s) 197
HaeIII GGCC 1 cut(s) 221
HapII CCGG 1 cut(s) 222
HgaI GACGC 1 cut(s) 107
HinfI GANTC 1 cut(s) 193
HpaII CCGG 1 cut(s) 222
HphI GGTGA 1 cut(s) 316
Hpy188I TCNGA 1 cut(s) 151
Hpy188III TCNNGA 2 cut(s) 59, 197
HpyAV CCTTC 3 cut(s) 121, 194, 230
HpyCH4III ACNGT 1 cut(s) 264
HpyCH4IV ACGT 1 cut(s) 36
HpyCH4V TGCA 2 cut(s) 271, 276
HpyF10VI GCNNNNNNNGC 2 cut(s) 214, 240
HpyF3I CTNAG 1 cut(s) 150
HpySE526I ACGT 1 cut(s) 36
Kzo9I GATC 2 cut(s) 46, 146
LguI GCTCTTC 1 cut(s) 57
LpnPI CCDG 2 cut(s) 235, 284
MaeI CTAG 1 cut(s) 197
MaeII ACGT 1 cut(s) 36
MaeIII GTNAC 1 cut(s) 32
MalI GATC 2 cut(s) 48, 148
MboI GATC 2 cut(s) 46, 146
MboII GAAGA 5 cut(s) 74, 144, 175, 301, 323
MflI RGATCY 1 cut(s) 146
MluCI AATT 1 cut(s) 254
MnlI CCTC 8 cut(s) 76, 108, 145, 148, 166, 169, 310, 327
MspI CCGG 1 cut(s) 222
MspR9I CCNGG 1 cut(s) 223
MvnI CGCG 2 cut(s) 51, 101
MwoI GCNNNNNNNGC 2 cut(s) 214, 240
NciI CCSGG 1 cut(s) 223
NdeII GATC 2 cut(s) 46, 146
NlaIV GGNNCC 1 cut(s) 108
NspV TTCGAA 1 cut(s) 287
PciSI GCTCTTC 1 cut(s) 57
PcsI WCGNNNNNNNCGW 1 cut(s) 55
PfeI GAWTC 1 cut(s) 193
PspN4I GGNNCC 1 cut(s) 108
PspPI GGNCC 1 cut(s) 219
PsuI RGATCY 1 cut(s) 146
SapI GCTCTTC 1 cut(s) 57
Sau3AI GATC 2 cut(s) 46, 146
Sau96I GGNCC 1 cut(s) 219
ScrFI CCNGG 1 cut(s) 223
SetI ASST 6 cut(s) 39, 69, 119, 159, 205, 321
SfuI TTCGAA 1 cut(s) 287
Sse9I AATT 1 cut(s) 254
SsiI CCGC 4 cut(s) 51, 101, 217, 243
SspMI CTAG 1 cut(s) 197
StyD4I CCNGG 1 cut(s) 221
TaaI ACNGT 1 cut(s) 264
TaiI ACGT 1 cut(s) 39
TaqI TCGA 3 cut(s) 41, 58, 287
TasI AATT 1 cut(s) 254
TfiI GAWTC 1 cut(s) 193
TscAI CASTG 1 cut(s) 278
TspRI CASTG 1 cut(s) 278
XapI RAATTY 1 cut(s) 254
XbaI TCTAGA 1 cut(s) 196
XspI CTAG 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.