Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003363.1

Orthogroup ID

OG0004963

Physical Location & Seq

Genomic Coordinates Reverse (-)

65754 .. 66236

Gene Structure 483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003363.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

atggccggcctcgacgccgacagcttccggttctcgccgctcccgccgccgaaacccttctcgattcgaaccccgaaaaccgcggataaagagaactccaacccgaaccggtctgttttagtcaaaggcccgctcgaccggtttgagagtatatgcgcgccggggggagagaacaaactagtgctgtatacgacgtcattgcggggagtacggaagactttagaggcgtgcaatgtcgtccgggcggcgatggagtatctcggcgtgatggtctgcgagcgtgacgtgtcgatggatcgcggatttcaagaagagctgaatgacttgatggaggggaaaggcagagacgcggtggtgccgccgaggttgtttgtgaagggaagatatgtgggtggatctgaggaggtgttgaagattgtggaggaggggttgttgggcactaccagaaaaatggtcttttacggcccacaaagaacgccgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glutaredoxin

Protein Analysis

160

Amino Acids

17.71

Weight (kDa)

8.8

Isoelectric Point (pI)

35.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32760 AT4G10630
fragaria_vesca	FvH4_5g10700
malus_domestica	MD06G1121200.v1.1 MD09G1197100.v1.1 MD14G1137800.v1.1
prunus_persica	Prupe.5G131800_v2.0.a1
pyrus_communis	pycom06g11250 pycom14g11300
rosa_chinensis	RchiOBHm_Chr1g0342161 RchiOBHm_Chr7g0187441
rosa_laevigata	RLG00000001600 RLG00000004781 RLG00000009467
rosa_multiflora	Rmu_sc0001230.1_g000015 Rmu_sc0003363.1_g000014 Rmu_sc0009146.1_g000005
rosa_roxburghii	Rroxscaffold_3G00267420
rosa_rugosa	Rorug06G0355300 Rorug06G0481600
rosa_samantha	Rh1CG026900 Rh5DG426300 Rh7AG086100 Rh7BG087600 Rh7CG087000 Rh7DG088600 Rh7DG307400 Rh7DG445500
rosa_wichuraiana	Rw2G033920 Rw7G007600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	197
AccB1I	GGYRCC	1 cut(s)	355
AccBSI	CCGCTC	2 cut(s)	40, 133
AccI	GTMKAC	1 cut(s)	188
AccII	CGCG	4 cut(s)	83, 158, 300, 350
AclWI	GGATC	2 cut(s)	303, 403
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	2 cut(s)	15, 194
AfaI	GTAC	1 cut(s)	210
AflIII	ACRYGT	1 cut(s)	285
AgeI	ACCGGT	2 cut(s)	108, 138
AgsI	TTSAA	2 cut(s)	308, 412
AhlI	ACTAGT	1 cut(s)	178
AjiI	CACGTC	1 cut(s)	286
AluBI	AGCT	2 cut(s)	24, 316
AluI	AGCT	2 cut(s)	24, 316
Alw26I	GTCTC	1 cut(s)	339
AlwI	GGATC	2 cut(s)	303, 403
AoxI	GGCC	4 cut(s)	3, 7, 127, 463
AsiGI	ACCGGT	2 cut(s)	108, 138
Asp700I	GAANNNNTTC	1 cut(s)	56
AspLEI	GCGC	2 cut(s)	158, 160
AspS9I	GGNCC	2 cut(s)	128, 464
AsuC2I	CCSGG	2 cut(s)	162, 242
AsuII	TTCGAA	1 cut(s)	67
BaeGI	GKGCMC	1 cut(s)	440
BanI	GGYRCC	1 cut(s)	355
BbsI	GAAGAC	1 cut(s)	221
BccI	CCATC	4 cut(s)	244, 262, 286, 322
BceAI	ACGGC	2 cut(s)	463, 478
BcgI	CGANNNNNNTGC	2 cut(s)	181, 215
BcnI	CCSGG	2 cut(s)	162, 242
BcoDI	GTCTC	1 cut(s)	339
BcuI	ACTAGT	1 cut(s)	178
BfaI	CTAG	1 cut(s)	179
BisI	GCNGC	4 cut(s)	38, 47, 246, 359
BlsI	GCNGC	4 cut(s)	39, 48, 247, 360
Bme1390I	CCNGG	2 cut(s)	162, 242
BmgBI	CACGTC	1 cut(s)	286
BmgT120I	GGNCC	2 cut(s)	128, 464
BmiI	GGNNCC	1 cut(s)	357
BmrFI	CCNGG	2 cut(s)	162, 242
BpiI	GAAGAC	1 cut(s)	221
Bpu14I	TTCGAA	1 cut(s)	67
BpuMI	CCSGG	2 cut(s)	162, 242
BsaHI	GRCGYC	2 cut(s)	15, 194
BsaJI	CCNNGG	3 cut(s)	81, 161, 362
BsaWI	WCCGGW	3 cut(s)	27, 108, 138
BsaXI	ACNNNNNCTCC	4 cut(s)	413, 416, 443, 446
Bse118I	RCCGGY	3 cut(s)	5, 108, 138
Bse3DI	GCAATG	2 cut(s)	197, 238
BseDI	CCNNGG	3 cut(s)	81, 161, 362
BseMI	GCAATG	2 cut(s)	197, 238
BseMII	CTCAG	1 cut(s)	390
BsePI	GCGCGC	1 cut(s)	156
BseRI	GAGGAG	2 cut(s)	416, 437
BseSI	GKGCMC	1 cut(s)	440
Bsh1236I	CGCG	4 cut(s)	83, 158, 300, 350
Bsh1285I	CGRYCG	1 cut(s)	139
BshFI	GGCC	4 cut(s)	5, 9, 129, 465
BshNI	GGYRCC	1 cut(s)	355
BshTI	ACCGGT	2 cut(s)	108, 138
BsiEI	CGRYCG	1 cut(s)	139
BsiSI	CCGG	6 cut(s)	6, 28, 109, 139, 161, 241
BsmAI	GTCTC	1 cut(s)	339
BsmBI	CGTCTC	1 cut(s)	339
BsnI	GGCC	4 cut(s)	5, 9, 129, 465
Bsp119I	TTCGAA	1 cut(s)	67
Bsp1286I	GDGCHC	1 cut(s)	440
Bsp143I	GATC	2 cut(s)	295, 395
BspANI	GGCC	4 cut(s)	5, 9, 129, 465
BspCNI	CTCAG	1 cut(s)	391
BspFNI	CGCG	4 cut(s)	83, 158, 300, 350
BspLI	GGNNCC	1 cut(s)	357
BspPI	GGATC	2 cut(s)	303, 403
BspQI	GCTCTTC	1 cut(s)	306
BspT104I	TTCGAA	1 cut(s)	67
BspT107I	GGYRCC	1 cut(s)	355
BsrBI	CCGCTC	2 cut(s)	40, 133
BsrDI	GCAATG	2 cut(s)	197, 238
BsrFI	RCCGGY	3 cut(s)	5, 108, 138
BssAI	RCCGGY	3 cut(s)	5, 108, 138
BssECI	CCNNGG	3 cut(s)	81, 161, 362
BssHII	GCGCGC	1 cut(s)	156
BssMI	GATC	2 cut(s)	295, 395
BssNAI	GTATAC	1 cut(s)	189
BssNI	GRCGYC	2 cut(s)	15, 194
Bst1107I	GTATAC	1 cut(s)	189
Bst6I	CTCTTC	1 cut(s)	306
BstACI	GRCGYC	2 cut(s)	15, 194
BstBI	TTCGAA	1 cut(s)	67
BstC8I	GCNNGC	5 cut(s)	7, 131, 158, 229, 278
BstDEI	CTNAG	1 cut(s)	399
BstDSI	CCRYGG	1 cut(s)	81
BstFNI	CGCG	4 cut(s)	83, 158, 300, 350
BstHHI	GCGC	2 cut(s)	158, 160
BstKTI	GATC	2 cut(s)	298, 398
BstMAI	GTCTC	1 cut(s)	339
BstMBI	GATC	2 cut(s)	295, 395
BstMCI	CGRYCG	1 cut(s)	139
BstMWI	GCNNNNNNNGC	2 cut(s)	43, 46
BstSCI	CCNGG	2 cut(s)	160, 240
BstSLI	GKGCMC	1 cut(s)	440
BstUI	CGCG	4 cut(s)	83, 158, 300, 350
BstV2I	GAAGAC	1 cut(s)	221
BstX2I	RGATCY	1 cut(s)	395
BstXI	CCANNNNNNTGG	1 cut(s)	451
BstYI	RGATCY	1 cut(s)	395
BstZ17I	GTATAC	1 cut(s)	189
BsuRI	GGCC	4 cut(s)	5, 9, 129, 465
BtgI	CCRYGG	1 cut(s)	81
BtgZI	GCGATG	1 cut(s)	263
BtrI	CACGTC	1 cut(s)	286
Cac8I	GCNNGC	5 cut(s)	7, 131, 158, 229, 278
CfoI	GCGC	2 cut(s)	158, 160
Cfr10I	RCCGGY	3 cut(s)	5, 108, 138
Cfr13I	GGNCC	2 cut(s)	128, 464
Cfr42I	CCGCGG	1 cut(s)	84
CseI	GACGC	2 cut(s)	23, 356
Csp6I	GTAC	1 cut(s)	209
CspAI	ACCGGT	2 cut(s)	108, 138
CviJI	RGCY	6 cut(s)	5, 9, 24, 129, 316, 465
CviKI_1	RGCY	6 cut(s)	5, 9, 24, 129, 316, 465
CviQI	GTAC	1 cut(s)	209
DdeI	CTNAG	1 cut(s)	399
DpnI	GATC	2 cut(s)	297, 397
DpnII	GATC	2 cut(s)	295, 395
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	306
EarI	CTCTTC	1 cut(s)	306
Esp3I	CGTCTC	1 cut(s)	339
FaiI	YATR	4 cut(s)	152, 154, 189, 387
FauI	CCCGC	3 cut(s)	51, 138, 195
FblI	GTMKAC	1 cut(s)	188
Fnu4HI	GCNGC	4 cut(s)	38, 47, 246, 359
FseI	GGCCGGCC	1 cut(s)	9
Fsp4HI	GCNGC	4 cut(s)	38, 47, 246, 359
FspBI	CTAG	1 cut(s)	179
GlaI	GCGC	2 cut(s)	157, 159
GluI	GCNGC	4 cut(s)	38, 47, 246, 359
HaeIII	GGCC	4 cut(s)	5, 9, 129, 465
HapII	CCGG	6 cut(s)	6, 28, 109, 139, 161, 241
HgaI	GACGC	2 cut(s)	23, 356
HhaI	GCGC	2 cut(s)	158, 160
Hin1I	GRCGYC	2 cut(s)	15, 194
Hin6I	GCGC	2 cut(s)	156, 158
HinP1I	GCGC	2 cut(s)	156, 158
HinfI	GANTC	1 cut(s)	64
HpaII	CCGG	6 cut(s)	6, 28, 109, 139, 161, 241
Hpy166II	GTNNAC	1 cut(s)	189
Hpy188I	TCNGA	1 cut(s)	400
Hpy188III	TCNNGA	2 cut(s)	61, 308
Hpy8I	GTNNAC	1 cut(s)	189
Hpy99I	CGWCG	2 cut(s)	17, 196
HpyAV	CCTTC	2 cut(s)	67, 370
HpyCH4IV	ACGT	2 cut(s)	194, 285
HpyCH4V	TGCA	1 cut(s)	231
HpyF10VI	GCNNNNNNNGC	2 cut(s)	43, 46
HpyF3I	CTNAG	1 cut(s)	399
HpySE526I	ACGT	2 cut(s)	194, 285
Hsp92I	GRCGYC	2 cut(s)	15, 194
HspAI	GCGC	2 cut(s)	156, 158
KroI	GCCGGC	1 cut(s)	5
KroNI	GCCGGC	1 cut(s)	7
KspI	CCGCGG	1 cut(s)	84
Kzo9I	GATC	2 cut(s)	295, 395
LguI	GCTCTTC	1 cut(s)	306
LmnI	GCTCC	1 cut(s)	45
LpnPI	CCDG	7 cut(s)	19, 41, 122, 152, 174, 254, 457
MaeI	CTAG	1 cut(s)	179
MaeII	ACGT	2 cut(s)	194, 285
MaeIII	GTNAC	1 cut(s)	281
MalI	GATC	2 cut(s)	297, 397
MbiI	CCGCTC	2 cut(s)	40, 133
MboI	GATC	2 cut(s)	295, 395
MboII	GAAGA	4 cut(s)	226, 323, 393, 424
MflI	RGATCY	1 cut(s)	395
MhlI	GDGCHC	1 cut(s)	440
MmeI	TCCRAC	1 cut(s)	123
MnlI	CCTC	8 cut(s)	20, 217, 325, 357, 394, 397, 415, 418
MroNI	GCCGGC	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	56
MspA1I	CMGCKG	1 cut(s)	83
MspI	CCGG	6 cut(s)	6, 28, 109, 139, 161, 241
MspR9I	CCNGG	2 cut(s)	162, 242
MvnI	CGCG	4 cut(s)	83, 158, 300, 350
MwoI	GCNNNNNNNGC	2 cut(s)	43, 46
NaeI	GCCGGC	1 cut(s)	7
NciI	CCSGG	2 cut(s)	162, 242
NdeII	GATC	2 cut(s)	295, 395
NgoMIV	GCCGGC	1 cut(s)	5
NlaIV	GGNNCC	1 cut(s)	357
NmeAIII	GCCGAG	2 cut(s)	240, 387
NmuCI	GTSAC	1 cut(s)	281
NspV	TTCGAA	1 cut(s)	67
PauI	GCGCGC	1 cut(s)	156
PciSI	GCTCTTC	1 cut(s)	306
PdiI	GCCGGC	1 cut(s)	7
PdmI	GAANNNNTTC	1 cut(s)	56
PfeI	GAWTC	1 cut(s)	64
PinAI	ACCGGT	2 cut(s)	108, 138
PkrI	GCNGC	4 cut(s)	39, 48, 247, 360
PspN4I	GGNNCC	1 cut(s)	357
PspPI	GGNCC	2 cut(s)	128, 464
PsuI	RGATCY	1 cut(s)	395
PteI	GCGCGC	1 cut(s)	156
RigI	GGCCGGCC	1 cut(s)	9
RsaI	GTAC	1 cut(s)	210
RsaNI	GTAC	1 cut(s)	209
SacII	CCGCGG	1 cut(s)	84
SapI	GCTCTTC	1 cut(s)	306
SatI	GCNGC	4 cut(s)	38, 47, 246, 359
Sau3AI	GATC	2 cut(s)	295, 395
Sau96I	GGNCC	2 cut(s)	128, 464
ScrFI	CCNGG	2 cut(s)	162, 242
SduI	GDGCHC	1 cut(s)	440
SetI	ASST	6 cut(s)	26, 197, 288, 318, 368, 408
Sfr303I	CCGCGG	1 cut(s)	84
SfuI	TTCGAA	1 cut(s)	67
SgrBI	CCGCGG	1 cut(s)	84
SpeI	ACTAGT	1 cut(s)	178
SspMI	CTAG	1 cut(s)	179
StyD4I	CCNGG	2 cut(s)	160, 240
TaiI	ACGT	2 cut(s)	197, 288
TaqI	TCGA	5 cut(s)	12, 62, 67, 135, 290
TauI	GCSGC	4 cut(s)	40, 49, 248, 361
TfiI	GAWTC	1 cut(s)	64
TseFI	GTSAC	1 cut(s)	281
Tsp45I	GTSAC	1 cut(s)	281
TspGWI	ACGGA	1 cut(s)	226
XmiI	GTMKAC	1 cut(s)	188
XmnI	GAANNNNTTC	1 cut(s)	56
XspI	CTAG	1 cut(s)	179
ZraI	GACGTC	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.