RLG00000004781

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0004963
Physical Location & Seq
Forward (+)
62227467 .. 62231860
4394 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004781

Sequence Viewer

Length: 996 bp
ATGGCAGGCCTCGACGCCGACAGCTTCCGGTTCTCGCCGCTCCCGCCGCCCAAACCCTTCTCGATTCGGACCCCGAAAACCGCGGATAAAGAGAACTCCAACCCGAACCGGGTGAACCGGTCTGTTTCAGTCAGAGGCCCGCTCGACCGGTTCGAGAGTATATGCCCGCCGGGGGGAGAGAACAAACTGGTGCTGTATACGACGTCGTTGCGGGGAGTGCGGAAGACTTTCGAGGCGTGCAATGCGGTCCGGGCGGCGGTCGAGAATCTCGGCGTGATGGTCTGCGAGCGTGACGTGTCGATGGATCGCGGATTTCGAGAAGAGCTGAATGACTTGATGGAGGGGAAAGGCAGAGACGCGGCGGTGCCGCCGAGGTTGTTTGTGAAGGGAAGATACGTGGGTGGATCCGAGGAGGTGTTGAAGATTGTGGAGGAGGGGTTGTTGGGGGAGATTCTAGAAGGTCTGCCCAAGAAGCGGGCCGGGTCGGTTTGCGAAGGGTGCGGAGAAGCGAAATTCTTGCCGTGTTTTCAGTGCAATGGGAGTTCGAAGATGGTGCTGGTGGTGAAAGAGGAGGCGGTGGTGGTGGGGCAGAGGCAGGGAGGCGGAGGCACGGTGGTGGTGAGGTGTCCGGAGTGTAATGAGAATGGACAACATGACGAACTCCGGCAATTCGCGACGAAGAGCAGACTGCTCTTCACACCCAAGCAATTGCTCAGGACACCCAAGCTCTATCTTCTCGCCGAATCTGTCGAACACCGTGTTGCAAATCGAACACCTCGCCCTCGCGGTCAAGATCGAGCTTCTGCACTGGCCAATTCTCATTCGGCCCGGATCTCATCTTTGCCTTCCGCTCTTGCAACCATATTCGCTGCACGAGCTTTTCCAGCCCAGCTCCAATTCACTCACCTTCGCCGGAGTCGATTTGAGATCGAGATGCAGACCTCCGATTCGCTGCATTTTGATTTCATGATTCGCGTGGTCGACTTGGCTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

332

Amino Acids

36.48

Weight (kDa)

9.18

Isoelectric Point (pI)

40.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 64 - 133 1.5e-08 Glutaredoxin
GRXCR1-2_C PF23733 164 - 216 3e-12 GRXCR1/2, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 206
AccB1I GGYRCC 1 cut(s) 364
AccBSI CCGCTC 3 cut(s) 40, 142, 851
AccI GTMKAC 2 cut(s) 197, 981
AccII CGCG 6 cut(s) 83, 309, 359, 674, 786, 975
AccIII TCCGGA 1 cut(s) 628
AclWI GGATC 4 cut(s) 312, 399, 412, 839
AcoI YGGCCR 1 cut(s) 810
AcsI RAATTY 1 cut(s) 512
AcyI GRCGYC 2 cut(s) 15, 203
AfiI CCNNNNNNNGG 5 cut(s) 109, 172, 173, 256, 474
AflIII ACRYGT 1 cut(s) 294
AgeI ACCGGT 2 cut(s) 117, 147
AgsI TTSAA 1 cut(s) 421
AjiI CACGTC 1 cut(s) 295
AleI CACNNNNGTG 1 cut(s) 614
AluBI AGCT 6 cut(s) 24, 325, 727, 800, 878, 892
AluI AGCT 6 cut(s) 24, 325, 727, 800, 878, 892
Alw26I GTCTC 1 cut(s) 348
AlwI GGATC 4 cut(s) 312, 399, 412, 839
Aor13HI TCCGGA 1 cut(s) 628
AoxI GGCC 5 cut(s) 7, 136, 477, 810, 825
ApeKI GCWGC 2 cut(s) 869, 952
ApoI RAATTY 1 cut(s) 512
ArsI GACNNNNNNTTYG 2 cut(s) 931, 963
AsiGI ACCGGT 2 cut(s) 117, 147
Asp700I GAANNNNTTC 1 cut(s) 227
AspS9I GGNCC 5 cut(s) 69, 137, 247, 477, 826
AsuC2I CCSGG 5 cut(s) 110, 171, 251, 481, 829
AsuHPI GGTGA 4 cut(s) 124, 574, 631, 896
AsuII TTCGAA 1 cut(s) 545
AvaII GGWCC 2 cut(s) 69, 247
BaeI ACNNNNGTAYC 2 cut(s) 385, 418
BalI TGGCCA 1 cut(s) 812
BamHI GGATCC 1 cut(s) 404
BanI GGYRCC 1 cut(s) 364
BarI GAAGNNNNNNTAC 2 cut(s) 377, 409
BauI CACGAG 1 cut(s) 873
BbsI GAAGAC 1 cut(s) 230
BbvI GCAGC 2 cut(s) 856, 939
BccI CCATC 4 cut(s) 271, 295, 331, 544
BceAI ACGGC 1 cut(s) 505
BcgI CGANNNNNNTGC 6 cut(s) 190, 224, 499, 533, 535, 569
BcnI CCSGG 5 cut(s) 110, 171, 251, 481, 829
BcoDI GTCTC 1 cut(s) 348
BfaI CTAG 1 cut(s) 455
BisI GCNGC 7 cut(s) 38, 47, 255, 360, 368, 870, 953
BlsI GCNGC 7 cut(s) 39, 48, 256, 361, 369, 871, 954
Bme1390I CCNGG 5 cut(s) 110, 171, 251, 481, 829
Bme18I GGWCC 2 cut(s) 69, 247
BmgBI CACGTC 1 cut(s) 295
BmgT120I GGNCC 5 cut(s) 69, 137, 247, 477, 826
BmiI GGNNCC 3 cut(s) 71, 366, 406
BmrFI CCNGG 5 cut(s) 110, 171, 251, 481, 829
BmsI GCATC 1 cut(s) 924
BpiI GAAGAC 1 cut(s) 230
BplI GAGNNNNNCTC 2 cut(s) 126, 158
Bpu10I CCTNAGC 1 cut(s) 713
Bpu14I TTCGAA 1 cut(s) 545
BpuMI CCSGG 5 cut(s) 110, 171, 251, 481, 829
BsaAI YACGTR 1 cut(s) 397
BsaHI GRCGYC 2 cut(s) 15, 203
BsaJI CCNNGG 4 cut(s) 81, 170, 371, 408
BsaWI WCCGGW 4 cut(s) 27, 117, 147, 628
BsaXI ACNNNNNCTCC 6 cut(s) 422, 425, 452, 455, 597, 627
Bsc4I CCNNNNNNNGG 5 cut(s) 109, 172, 173, 256, 474
Bse118I RCCGGY 2 cut(s) 117, 147
Bse1I ACTGG 2 cut(s) 192, 813
Bse3DI GCAATG 2 cut(s) 247, 541
BseAI TCCGGA 1 cut(s) 628
BseDI CCNNGG 4 cut(s) 81, 170, 371, 408
BseLI CCNNNNNNNGG 5 cut(s) 109, 172, 173, 256, 474
BseMI GCAATG 2 cut(s) 247, 541
BseMII CTCAG 1 cut(s) 727
BseNI ACTGG 2 cut(s) 192, 813
BseRI GAGGAG 3 cut(s) 425, 446, 584
BseXI GCAGC 2 cut(s) 856, 939
BseYI CCCAGC 1 cut(s) 888
BsgI GTGCAG 2 cut(s) 789, 855
Bsh1236I CGCG 6 cut(s) 83, 309, 359, 674, 786, 975
Bsh1285I CGRYCG 2 cut(s) 148, 261
BshFI GGCC 5 cut(s) 9, 138, 479, 812, 827
BshNI GGYRCC 1 cut(s) 364
BshTI ACCGGT 2 cut(s) 117, 147
BsiEI CGRYCG 2 cut(s) 148, 261
BslI CCNNNNNNNGG 5 cut(s) 109, 172, 173, 256, 474
BsmAI GTCTC 1 cut(s) 348
BsmBI CGTCTC 1 cut(s) 348
BsnI GGCC 5 cut(s) 9, 138, 479, 812, 827
Bsp119I TTCGAA 1 cut(s) 545
Bsp13I TCCGGA 1 cut(s) 628
Bsp143I GATC 5 cut(s) 304, 404, 793, 831, 927
Bsp68I TCGCGA 1 cut(s) 674
BspANI GGCC 5 cut(s) 9, 138, 479, 812, 827
BspCNI CTCAG 1 cut(s) 726
BspEI TCCGGA 1 cut(s) 628
BspFNI CGCG 6 cut(s) 83, 309, 359, 674, 786, 975
BspHI TCATGA 1 cut(s) 966
BspLI GGNNCC 3 cut(s) 71, 366, 406
BspPI GGATC 4 cut(s) 312, 399, 412, 839
BspQI GCTCTTC 3 cut(s) 315, 674, 698
BspT104I TTCGAA 1 cut(s) 545
BspT107I GGYRCC 1 cut(s) 364
BsrBI CCGCTC 3 cut(s) 40, 142, 851
BsrDI GCAATG 2 cut(s) 247, 541
BsrFI RCCGGY 2 cut(s) 117, 147
BsrI ACTGG 2 cut(s) 192, 813
BssAI RCCGGY 2 cut(s) 117, 147
BssECI CCNNGG 4 cut(s) 81, 170, 371, 408
BssMI GATC 5 cut(s) 304, 404, 793, 831, 927
BssNAI GTATAC 1 cut(s) 198
BssNI GRCGYC 2 cut(s) 15, 203
BssSI CACGAG 1 cut(s) 873
Bst1107I GTATAC 1 cut(s) 198
Bst2BI CACGAG 1 cut(s) 873
Bst4CI ACNGT 2 cut(s) 613, 758
Bst6I CTCTTC 3 cut(s) 315, 674, 698
BstACI GRCGYC 2 cut(s) 15, 203
BstBAI YACGTR 1 cut(s) 397
BstBI TTCGAA 1 cut(s) 545
BstC8I GCNNGC 6 cut(s) 7, 140, 167, 238, 287, 477
BstDEI CTNAG 1 cut(s) 713
BstDSI CCRYGG 1 cut(s) 81
BstFNI CGCG 6 cut(s) 83, 309, 359, 674, 786, 975
BstKTI GATC 5 cut(s) 307, 407, 796, 834, 930
BstMAI GTCTC 1 cut(s) 348
BstMBI GATC 5 cut(s) 304, 404, 793, 831, 927
BstMCI CGRYCG 2 cut(s) 148, 261
BstMWI GCNNNNNNNGC 9 cut(s) 43, 46, 217, 242, 251, 472, 498, 875, 884
BstSCI CCNGG 5 cut(s) 108, 169, 249, 479, 827
BstUI CGCG 6 cut(s) 83, 309, 359, 674, 786, 975
BstV1I GCAGC 2 cut(s) 856, 939
BstV2I GAAGAC 1 cut(s) 230
BstX2I RGATCY 2 cut(s) 404, 831
BstYI RGATCY 2 cut(s) 404, 831
BstZ17I GTATAC 1 cut(s) 198
BsuRI GGCC 5 cut(s) 9, 138, 479, 812, 827
BtgI CCRYGG 1 cut(s) 81
BtrI CACGTC 1 cut(s) 295
BtsIMutI CAGTG 2 cut(s) 536, 806
BtuMI TCGCGA 1 cut(s) 674
Cac8I GCNNGC 6 cut(s) 7, 140, 167, 238, 287, 477
CciI TCATGA 1 cut(s) 966
Cfr10I RCCGGY 2 cut(s) 117, 147
Cfr13I GGNCC 5 cut(s) 69, 137, 247, 477, 826
Cfr42I CCGCGG 1 cut(s) 84
CpoI CGGWCCG 1 cut(s) 247
CseI GACGC 2 cut(s) 23, 365
CspAI ACCGGT 2 cut(s) 117, 147
CspI CGGWCCG 1 cut(s) 247
CviAII CATG 2 cut(s) 653, 967
DdeI CTNAG 1 cut(s) 713
DpnI GATC 5 cut(s) 306, 406, 795, 833, 929
DpnII GATC 5 cut(s) 304, 404, 793, 831, 927
EaeI YGGCCR 1 cut(s) 810
Eam1104I CTCTTC 3 cut(s) 315, 674, 698
EarI CTCTTC 3 cut(s) 315, 674, 698
EciI GGCGGA 1 cut(s) 618
Eco147I AGGCCT 1 cut(s) 9
Eco47I GGWCC 2 cut(s) 69, 247
Esp3I CGTCTC 1 cut(s) 348
FaeI CATG 2 cut(s) 656, 970
FaiI YATR 6 cut(s) 161, 163, 198, 654, 863, 968
FatI CATG 2 cut(s) 652, 966
FauI CCCGC 5 cut(s) 51, 147, 174, 204, 468
FblI GTMKAC 2 cut(s) 197, 981
Fnu4HI GCNGC 7 cut(s) 38, 47, 255, 360, 368, 870, 953
Fsp4HI GCNGC 7 cut(s) 38, 47, 255, 360, 368, 870, 953
FspBI CTAG 1 cut(s) 455
GluI GCNGC 7 cut(s) 38, 47, 255, 360, 368, 870, 953
GsaI CCCAGC 1 cut(s) 892
HaeIII GGCC 5 cut(s) 9, 138, 479, 812, 827
HgaI GACGC 2 cut(s) 23, 365
Hin1I GRCGYC 2 cut(s) 15, 203
Hin1II CATG 2 cut(s) 656, 970
HincII GTYRAC 1 cut(s) 982
HindII GTYRAC 1 cut(s) 982
HinfI GANTC 7 cut(s) 64, 265, 451, 743, 916, 947, 970
HphI GGTGA 4 cut(s) 124, 574, 631, 896
Hpy166II GTNNAC 3 cut(s) 115, 198, 982
Hpy188I TCNGA 4 cut(s) 69, 134, 409, 946
Hpy8I GTNNAC 3 cut(s) 115, 198, 982
Hpy99I CGWCG 4 cut(s) 17, 205, 208, 679
HpyAV CCTTC 6 cut(s) 67, 379, 452, 488, 855, 917
HpyCH4III ACNGT 2 cut(s) 613, 758
HpyCH4IV ACGT 3 cut(s) 203, 294, 396
HpyCH4V TGCA 8 cut(s) 240, 534, 764, 806, 857, 872, 937, 955
HpyF10VI GCNNNNNNNGC 9 cut(s) 43, 46, 217, 242, 251, 472, 498, 875, 884
HpyF3I CTNAG 1 cut(s) 713
HpySE526I ACGT 3 cut(s) 203, 294, 396
Hsp92I GRCGYC 2 cut(s) 15, 203
Hsp92II CATG 2 cut(s) 656, 970
Kpn2I TCCGGA 1 cut(s) 628
KspI CCGCGG 1 cut(s) 84
Kzo9I GATC 5 cut(s) 304, 404, 793, 831, 927
LguI GCTCTTC 3 cut(s) 315, 674, 698
LmnI GCTCC 2 cut(s) 45, 897
Lsp1109I GCAGC 2 cut(s) 856, 939
LweI GCATC 1 cut(s) 924
MaeI CTAG 1 cut(s) 455
MaeII ACGT 3 cut(s) 203, 294, 396
MaeIII GTNAC 1 cut(s) 290
MalI GATC 5 cut(s) 306, 406, 795, 833, 929
MbiI CCGCTC 3 cut(s) 40, 142, 851
MboI GATC 5 cut(s) 304, 404, 793, 831, 927
MboII GAAGA 8 cut(s) 235, 332, 402, 433, 559, 685, 691, 725
MfeI CAATTG 1 cut(s) 707
MflI RGATCY 2 cut(s) 404, 831
MlsI TGGCCA 1 cut(s) 812
MluCI AATT 5 cut(s) 512, 668, 707, 814, 896
MluNI TGGCCA 1 cut(s) 812
MlyI GAGTC 1 cut(s) 925
MmeI TCCRAC 1 cut(s) 123
Mox20I TGGCCA 1 cut(s) 812
MroI TCCGGA 1 cut(s) 628
MroXI GAANNNNTTC 1 cut(s) 227
MscI TGGCCA 1 cut(s) 812
MslI CAYNNNNRTG 1 cut(s) 614
Msp20I TGGCCA 1 cut(s) 812
MspA1I CMGCKG 1 cut(s) 83
MspR9I CCNGG 5 cut(s) 110, 171, 251, 481, 829
MunI CAATTG 1 cut(s) 707
MvnI CGCG 6 cut(s) 83, 309, 359, 674, 786, 975
MwoI GCNNNNNNNGC 9 cut(s) 43, 46, 217, 242, 251, 472, 498, 875, 884
NciI CCSGG 5 cut(s) 110, 171, 251, 481, 829
NdeII GATC 5 cut(s) 304, 404, 793, 831, 927
NlaIII CATG 2 cut(s) 656, 970
NlaIV GGNNCC 3 cut(s) 71, 366, 406
NmeAIII GCCGAG 2 cut(s) 249, 396
NmuCI GTSAC 1 cut(s) 290
NruI TCGCGA 1 cut(s) 674
NspV TTCGAA 1 cut(s) 545
OliI CACNNNNGTG 1 cut(s) 614
PagI TCATGA 1 cut(s) 966
PceI AGGCCT 1 cut(s) 9
PciSI GCTCTTC 3 cut(s) 315, 674, 698
PcsI WCGNNNNNNNCGW 3 cut(s) 150, 313, 916
PdmI GAANNNNTTC 1 cut(s) 227
PfeI GAWTC 6 cut(s) 64, 265, 451, 743, 947, 970
PinAI ACCGGT 2 cut(s) 117, 147
PkrI GCNGC 7 cut(s) 39, 48, 256, 361, 369, 871, 954
PleI GAGTC 1 cut(s) 924
PpsI GAGTC 1 cut(s) 924
Ppu21I YACGTR 1 cut(s) 397
PspFI CCCAGC 1 cut(s) 888
PspN4I GGNNCC 3 cut(s) 71, 366, 406
PspPI GGNCC 5 cut(s) 69, 137, 247, 477, 826
PsuI RGATCY 2 cut(s) 404, 831
RruI TCGCGA 1 cut(s) 674
RseI CAYNNNNRTG 1 cut(s) 614
Rsr2I CGGWCCG 1 cut(s) 247
RsrII CGGWCCG 1 cut(s) 247
SacII CCGCGG 1 cut(s) 84
SalI GTCGAC 1 cut(s) 980
SapI GCTCTTC 3 cut(s) 315, 674, 698
SatI GCNGC 7 cut(s) 38, 47, 255, 360, 368, 870, 953
Sau3AI GATC 5 cut(s) 304, 404, 793, 831, 927
Sau96I GGNCC 5 cut(s) 69, 137, 247, 477, 826
SchI GAGTC 1 cut(s) 925
ScrFI CCNGG 5 cut(s) 110, 171, 251, 481, 829
SfaNI GCATC 1 cut(s) 924
Sfr303I CCGCGG 1 cut(s) 84
SfuI TTCGAA 1 cut(s) 545
SgrBI CCGCGG 1 cut(s) 84
SinI GGWCC 2 cut(s) 69, 247
SmiMI CAYNNNNRTG 1 cut(s) 614
Sse9I AATT 5 cut(s) 512, 668, 707, 814, 896
SseBI AGGCCT 1 cut(s) 9
SspMI CTAG 1 cut(s) 455
StuI AGGCCT 1 cut(s) 9
StyD4I CCNGG 5 cut(s) 108, 169, 249, 479, 827
TaaI ACNGT 2 cut(s) 613, 758
TaiI ACGT 3 cut(s) 206, 297, 399
TasI AATT 5 cut(s) 512, 668, 707, 814, 896
TauI GCSGC 5 cut(s) 40, 49, 257, 362, 370
TfiI GAWTC 6 cut(s) 64, 265, 451, 743, 947, 970
TscAI CASTG 2 cut(s) 536, 813
TseFI GTSAC 1 cut(s) 290
TseI GCWGC 2 cut(s) 869, 952
Tsp45I GTSAC 1 cut(s) 290
TspDTI ATGAA 1 cut(s) 955
TspRI CASTG 2 cut(s) 536, 813
VpaK11BI GGWCC 2 cut(s) 69, 247
XapI RAATTY 1 cut(s) 512
XbaI TCTAGA 1 cut(s) 454
XmiI GTMKAC 2 cut(s) 197, 981
XmnI GAANNNNTTC 1 cut(s) 227
XspI CTAG 1 cut(s) 455
ZraI GACGTC 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.