Rw2G033920

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0004963
Physical Location & Seq
Forward (+)
55663629 .. 55664294
666 bp
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UTR
Exon/CDS
Intron
Rw2G033920.1

Sequence Viewer

Length: 609 bp
ATGGCCAGCCTCAACGCCGACAGCTTCCGGTTCTCGCCGCTCCCGCCGCGGAAACCCTTCTCGATTCGAACCCCGAAAACCGCGGATAAAGAGAACTCCAACCCGAACCAGTCTGTTTTAGTCAAAGGCCCGCTCGACCGGTTTGAGAGTATATGCCCGTCGGGGGGAGAGAACAAACTAGTGCTGTATACGACGTCATTGCGGGGAGTGCGGAAGACTTTAGAGGTGTGCAATGCGGTCCGGGCGGCGATGGAGTATCTCGGCGTGATGGTCTGCCAGCGTGACATGTCGATGGATTGCGGATTTCGAGAAGAGCTGAATGACTTGATGGAGGGGAAAGGCAGAGACGTGGCGGTGCCGCCGAGGTTGTTTGTGAAGGGAAGATATGTGGGTGGATCTGAGGAGGTGTTGAAGATTGTGGAGGAGGGGTTGTTGGGGGAGATTCTAGAAGGTCTGCCCAAGAAGCGGGCCGGGTCGGTTTGCGAAGGGTGCGGAGAAGCGAAATTCTTACCGTGTTTTCAGTGCAATGGGAGTTCGAAGATGGTGCTGGTGGTGAAAGAAGACGAGTGTAATGAGAATGGGTTGGTGCTCTGCCCAATTTGTAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

202

Amino Acids

22.09

Weight (kDa)

6.42

Isoelectric Point (pI)

34.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRXCR1-2_C PF23733 161 - 202 1.6e-13 GRXCR1/2, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 197
AccB1I GGYRCC 1 cut(s) 355
AccBSI CCGCTC 2 cut(s) 40, 133
AccI GTMKAC 1 cut(s) 188
AccII CGCG 2 cut(s) 49, 83
AclWI GGATC 1 cut(s) 403
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 503
AcyI GRCGYC 1 cut(s) 194
AfiI CCNNNNNNNGG 3 cut(s) 163, 164, 465
AflIII ACRYGT 1 cut(s) 285
AgeI ACCGGT 1 cut(s) 138
AgsI TTSAA 1 cut(s) 412
AhlI ACTAGT 1 cut(s) 178
AjiI CACGTC 1 cut(s) 349
AluBI AGCT 3 cut(s) 24, 316, 606
AluI AGCT 3 cut(s) 24, 316, 606
Alw21I GWGCWC 1 cut(s) 591
Alw26I GTCTC 1 cut(s) 339
AlwI GGATC 1 cut(s) 403
AoxI GGCC 3 cut(s) 3, 127, 468
ApoI RAATTY 1 cut(s) 503
AsiGI ACCGGT 1 cut(s) 138
Asp700I GAANNNNTTC 1 cut(s) 56
AspS9I GGNCC 3 cut(s) 128, 238, 468
AsuC2I CCSGG 2 cut(s) 242, 472
AsuHPI GGTGA 1 cut(s) 565
AsuII TTCGAA 2 cut(s) 67, 536
AvaII GGWCC 1 cut(s) 238
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 355
BbsI GAAGAC 2 cut(s) 221, 567
Bbv12I GWGCWC 1 cut(s) 591
BccI CCATC 5 cut(s) 244, 262, 286, 322, 535
BcgI CGANNNNNNTGC 4 cut(s) 181, 215, 526, 560
BcnI CCSGG 2 cut(s) 242, 472
BcoDI GTCTC 1 cut(s) 339
BcuI ACTAGT 1 cut(s) 178
BfaI CTAG 2 cut(s) 179, 446
BisI GCNGC 4 cut(s) 38, 47, 246, 359
BlsI GCNGC 4 cut(s) 39, 48, 247, 360
Bme1390I CCNGG 2 cut(s) 242, 472
Bme18I GGWCC 1 cut(s) 238
BmgBI CACGTC 1 cut(s) 349
BmgT120I GGNCC 3 cut(s) 128, 238, 468
BmiI GGNNCC 1 cut(s) 357
BmrFI CCNGG 2 cut(s) 242, 472
BpiI GAAGAC 2 cut(s) 221, 567
Bpu14I TTCGAA 2 cut(s) 67, 536
BpuMI CCSGG 2 cut(s) 242, 472
BsaHI GRCGYC 1 cut(s) 194
BsaJI CCNNGG 3 cut(s) 47, 81, 362
BsaWI WCCGGW 2 cut(s) 27, 138
BsaXI ACNNNNNCTCC 4 cut(s) 413, 416, 443, 446
Bsc4I CCNNNNNNNGG 3 cut(s) 163, 164, 465
Bse118I RCCGGY 1 cut(s) 138
Bse1I ACTGG 1 cut(s) 109
Bse3DI GCAATG 3 cut(s) 197, 238, 532
BseDI CCNNGG 3 cut(s) 47, 81, 362
BseLI CCNNNNNNNGG 3 cut(s) 163, 164, 465
BseMI GCAATG 3 cut(s) 197, 238, 532
BseMII CTCAG 1 cut(s) 390
BseNI ACTGG 1 cut(s) 109
BseRI GAGGAG 2 cut(s) 416, 437
Bsh1236I CGCG 2 cut(s) 49, 83
Bsh1285I CGRYCG 1 cut(s) 139
BshFI GGCC 3 cut(s) 5, 129, 470
BshNI GGYRCC 1 cut(s) 355
BshTI ACCGGT 1 cut(s) 138
BsiEI CGRYCG 1 cut(s) 139
BsiHKAI GWGCWC 1 cut(s) 591
BsiSI CCGG 4 cut(s) 28, 139, 241, 471
BslI CCNNNNNNNGG 3 cut(s) 163, 164, 465
BsmAI GTCTC 1 cut(s) 339
BsmBI CGTCTC 1 cut(s) 339
BsnI GGCC 3 cut(s) 5, 129, 470
Bsp119I TTCGAA 2 cut(s) 67, 536
Bsp1286I GDGCHC 1 cut(s) 591
Bsp143I GATC 1 cut(s) 395
BspANI GGCC 3 cut(s) 5, 129, 470
BspCNI CTCAG 1 cut(s) 391
BspFNI CGCG 2 cut(s) 49, 83
BspLI GGNNCC 1 cut(s) 357
BspPI GGATC 1 cut(s) 403
BspQI GCTCTTC 1 cut(s) 306
BspT104I TTCGAA 2 cut(s) 67, 536
BspT107I GGYRCC 1 cut(s) 355
BsrBI CCGCTC 2 cut(s) 40, 133
BsrDI GCAATG 3 cut(s) 197, 238, 532
BsrFI RCCGGY 1 cut(s) 138
BsrI ACTGG 1 cut(s) 109
BssAI RCCGGY 1 cut(s) 138
BssECI CCNNGG 3 cut(s) 47, 81, 362
BssMI GATC 1 cut(s) 395
BssNAI GTATAC 1 cut(s) 189
BssNI GRCGYC 1 cut(s) 194
Bst1107I GTATAC 1 cut(s) 189
Bst4CI ACNGT 1 cut(s) 513
Bst6I CTCTTC 1 cut(s) 306
BstACI GRCGYC 1 cut(s) 194
BstBI TTCGAA 2 cut(s) 67, 536
BstC8I GCNNGC 4 cut(s) 7, 131, 278, 468
BstDEI CTNAG 1 cut(s) 399
BstDSI CCRYGG 2 cut(s) 47, 81
BstFNI CGCG 2 cut(s) 49, 83
BstKTI GATC 1 cut(s) 398
BstMAI GTCTC 1 cut(s) 339
BstMBI GATC 1 cut(s) 395
BstMCI CGRYCG 1 cut(s) 139
BstMWI GCNNNNNNNGC 6 cut(s) 43, 46, 208, 242, 463, 489
BstNSI RCATGY 1 cut(s) 289
BstSCI CCNGG 2 cut(s) 240, 470
BstUI CGCG 2 cut(s) 49, 83
BstV2I GAAGAC 2 cut(s) 221, 567
BstX2I RGATCY 1 cut(s) 395
BstYI RGATCY 1 cut(s) 395
BstZ17I GTATAC 1 cut(s) 189
BsuRI GGCC 3 cut(s) 5, 129, 470
BtgI CCRYGG 2 cut(s) 47, 81
BtgZI GCGATG 1 cut(s) 263
BtrI CACGTC 1 cut(s) 349
BtsIMutI CAGTG 1 cut(s) 527
Cac8I GCNNGC 4 cut(s) 7, 131, 278, 468
Cfr10I RCCGGY 1 cut(s) 138
Cfr13I GGNCC 3 cut(s) 128, 238, 468
Cfr42I CCGCGG 2 cut(s) 50, 84
CpoI CGGWCCG 1 cut(s) 238
CspAI ACCGGT 1 cut(s) 138
CspI CGGWCCG 1 cut(s) 238
CviAII CATG 1 cut(s) 286
CviJI RGCY 7 cut(s) 5, 9, 24, 129, 316, 470, 606
CviKI_1 RGCY 7 cut(s) 5, 9, 24, 129, 316, 470, 606
DdeI CTNAG 1 cut(s) 399
DpnI GATC 1 cut(s) 397
DpnII GATC 1 cut(s) 395
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 306
EarI CTCTTC 1 cut(s) 306
Eco47I GGWCC 1 cut(s) 238
Esp3I CGTCTC 1 cut(s) 339
FaeI CATG 1 cut(s) 289
FaiI YATR 5 cut(s) 152, 154, 189, 287, 387
FatI CATG 1 cut(s) 285
FauI CCCGC 4 cut(s) 51, 138, 195, 459
FblI GTMKAC 1 cut(s) 188
Fnu4HI GCNGC 4 cut(s) 38, 47, 246, 359
Fsp4HI GCNGC 4 cut(s) 38, 47, 246, 359
FspBI CTAG 2 cut(s) 179, 446
GluI GCNGC 4 cut(s) 38, 47, 246, 359
HaeIII GGCC 3 cut(s) 5, 129, 470
HapII CCGG 4 cut(s) 28, 139, 241, 471
Hin1I GRCGYC 1 cut(s) 194
Hin1II CATG 1 cut(s) 289
HinfI GANTC 2 cut(s) 64, 442
HpaII CCGG 4 cut(s) 28, 139, 241, 471
HphI GGTGA 1 cut(s) 565
Hpy166II GTNNAC 1 cut(s) 189
Hpy188I TCNGA 1 cut(s) 400
Hpy188III TCNNGA 3 cut(s) 61, 308, 446
Hpy8I GTNNAC 1 cut(s) 189
Hpy99I CGWCG 2 cut(s) 163, 196
HpyAV CCTTC 4 cut(s) 67, 370, 443, 479
HpyCH4III ACNGT 1 cut(s) 513
HpyCH4IV ACGT 2 cut(s) 194, 348
HpyCH4V TGCA 2 cut(s) 231, 525
HpyF10VI GCNNNNNNNGC 6 cut(s) 43, 46, 208, 242, 463, 489
HpyF3I CTNAG 1 cut(s) 399
HpySE526I ACGT 2 cut(s) 194, 348
Hsp92I GRCGYC 1 cut(s) 194
Hsp92II CATG 1 cut(s) 289
KspI CCGCGG 2 cut(s) 50, 84
Kzo9I GATC 1 cut(s) 395
LguI GCTCTTC 1 cut(s) 306
LmnI GCTCC 1 cut(s) 45
LpnPI CCDG 8 cut(s) 19, 41, 122, 152, 254, 290, 484, 533
MaeI CTAG 2 cut(s) 179, 446
MaeII ACGT 2 cut(s) 194, 348
MaeIII GTNAC 1 cut(s) 281
MalI GATC 1 cut(s) 397
MbiI CCGCTC 2 cut(s) 40, 133
MboI GATC 1 cut(s) 395
MboII GAAGA 6 cut(s) 226, 323, 393, 424, 550, 572
MflI RGATCY 1 cut(s) 395
MhlI GDGCHC 1 cut(s) 591
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 503, 597
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 123
MnlI CCTC 8 cut(s) 20, 217, 325, 357, 394, 397, 415, 418
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 56
MscI TGGCCA 1 cut(s) 5
MslI CAYNNNNRTG 1 cut(s) 290
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 49, 83
MspI CCGG 4 cut(s) 28, 139, 241, 471
MspR9I CCNGG 2 cut(s) 242, 472
MvnI CGCG 2 cut(s) 49, 83
MwoI GCNNNNNNNGC 6 cut(s) 43, 46, 208, 242, 463, 489
NciI CCSGG 2 cut(s) 242, 472
NdeII GATC 1 cut(s) 395
NlaIII CATG 1 cut(s) 289
NlaIV GGNNCC 1 cut(s) 357
NmeAIII GCCGAG 2 cut(s) 240, 387
NmuCI GTSAC 1 cut(s) 281
NspI RCATGY 1 cut(s) 289
NspV TTCGAA 2 cut(s) 67, 536
PciI ACATGT 1 cut(s) 285
PciSI GCTCTTC 1 cut(s) 306
PdmI GAANNNNTTC 1 cut(s) 56
PfeI GAWTC 2 cut(s) 64, 442
PinAI ACCGGT 1 cut(s) 138
PkrI GCNGC 4 cut(s) 39, 48, 247, 360
PscI ACATGT 1 cut(s) 285
PspN4I GGNNCC 1 cut(s) 357
PspPI GGNCC 3 cut(s) 128, 238, 468
PsuI RGATCY 1 cut(s) 395
RseI CAYNNNNRTG 1 cut(s) 290
Rsr2I CGGWCCG 1 cut(s) 238
RsrII CGGWCCG 1 cut(s) 238
SacII CCGCGG 2 cut(s) 50, 84
SapI GCTCTTC 1 cut(s) 306
SatI GCNGC 4 cut(s) 38, 47, 246, 359
Sau3AI GATC 1 cut(s) 395
Sau96I GGNCC 3 cut(s) 128, 238, 468
ScrFI CCNGG 2 cut(s) 242, 472
SduI GDGCHC 1 cut(s) 591
SetI ASST 9 cut(s) 26, 197, 228, 318, 351, 368, 408, 454, 608
Sfr303I CCGCGG 2 cut(s) 50, 84
SfuI TTCGAA 2 cut(s) 67, 536
SgrBI CCGCGG 2 cut(s) 50, 84
SinI GGWCC 1 cut(s) 238
SmiMI CAYNNNNRTG 1 cut(s) 290
SpeI ACTAGT 1 cut(s) 178
Sse9I AATT 2 cut(s) 503, 597
SspMI CTAG 2 cut(s) 179, 446
StyD4I CCNGG 2 cut(s) 240, 470
TaaI ACNGT 1 cut(s) 513
TaiI ACGT 2 cut(s) 197, 351
TaqI TCGA 6 cut(s) 62, 67, 135, 290, 307, 536
TasI AATT 2 cut(s) 503, 597
TauI GCSGC 4 cut(s) 40, 49, 248, 361
TfiI GAWTC 2 cut(s) 64, 442
TscAI CASTG 1 cut(s) 527
TseFI GTSAC 1 cut(s) 281
Tsp45I GTSAC 1 cut(s) 281
TspRI CASTG 1 cut(s) 527
VpaK11BI GGWCC 1 cut(s) 238
XapI RAATTY 1 cut(s) 503
XbaI TCTAGA 1 cut(s) 445
XceI RCATGY 1 cut(s) 289
XmiI GTMKAC 1 cut(s) 188
XmnI GAANNNNTTC 1 cut(s) 56
XspI CTAG 2 cut(s) 179, 446
ZraI GACGTC 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.