RLG00000001600

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0004963
Physical Location & Seq
Reverse (-)
17993138 .. 17995161
2024 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001600

Sequence Viewer

Length: 543 bp
ATGTCGTTGCGGGGAGTGCGGAAGACTTTCGAGGCGTGCAATGAGGTCCGGGCGGCGATGGAGAATCTCGGCGCGATGGTCTGCGTGCGTGACGTGTCGATGGATAGCGGATTCCGAGAAAAGCTGAATGACTTGATGGAGGGGAAAGGCAGAGACGCGGCGGTGCCACCGAGGTTGTTTGTGAAGGGAAGATATGTGGGTGGATCCGAGGAGGTGTTGAAGATTGTGGAGGAGGGGTTGTTGGGGGAGATTCTAGAAGGTCTGCCCAAGAAGCGGGCCGGGTCGGTTTGCGAAGGGTACGGAGAAGTGAAATTCTTGCCGTGTTTTCAGTGCAATGGGAGTTCGAAGATGGTGCTGGTGGTGAAAAAAGACGAGGTGGTGGTGGGGCAGAGGCAGGGAGGCGGCAGCACGGTGGTCGTGAGGTGTCCCGAGTGTGGAGCTAGGAGTAGCACAGCAGGTCGAAAAGGCATGGCTGATGCTCTAGCAGATATGAAAAAAAGTGGCTTTTGCAGTGCGCCTAGCTTTGCTGATTCAAGGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

181

Amino Acids

19.22

Weight (kDa)

8.79

Isoelectric Point (pI)

36.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 8 - 66 5.3e-07 Glutaredoxin
GRXCR1-2_C PF23733 97 - 145 1.7e-07 GRXCR1/2, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 446
AccB1I GGYRCC 1 cut(s) 163
AccII CGCG 2 cut(s) 74, 158
AciI CCGC 8 cut(s) 10, 19, 53, 108, 158, 161, 274, 402
AclWI GGATC 2 cut(s) 198, 211
AcsI RAATTY 1 cut(s) 311
AfaI GTAC 1 cut(s) 299
AfiI CCNNNNNNNGG 2 cut(s) 273, 434
AflIII ACRYGT 1 cut(s) 93
AgsI TTSAA 2 cut(s) 220, 534
AjiI CACGTC 1 cut(s) 94
AluBI AGCT 3 cut(s) 124, 440, 522
AluI AGCT 3 cut(s) 124, 440, 522
Alw26I GTCTC 1 cut(s) 147
AlwI GGATC 2 cut(s) 198, 211
Ama87I CYCGRG 1 cut(s) 428
AoxI GGCC 1 cut(s) 276
ApeKI GCWGC 1 cut(s) 405
ApoI RAATTY 1 cut(s) 311
Asp700I GAANNNNTTC 1 cut(s) 26
AspLEI GCGC 2 cut(s) 74, 517
AspS9I GGNCC 2 cut(s) 46, 276
AsuC2I CCSGG 2 cut(s) 50, 280
AsuHPI GGTGA 1 cut(s) 373
AsuII TTCGAA 1 cut(s) 344
AvaI CYCGRG 1 cut(s) 428
AvaII GGWCC 1 cut(s) 46
BamHI GGATCC 1 cut(s) 203
BanI GGYRCC 1 cut(s) 163
BbsI GAAGAC 1 cut(s) 29
BbvI GCAGC 1 cut(s) 417
BccI CCATC 5 cut(s) 52, 70, 94, 130, 343
BceAI ACGGC 1 cut(s) 304
BcgI CGANNNNNNTGC 4 cut(s) 334, 368, 397, 431
BcnI CCSGG 2 cut(s) 50, 280
BcoDI GTCTC 1 cut(s) 147
BfaI CTAG 4 cut(s) 254, 441, 482, 519
BfuAI ACCTGC 1 cut(s) 446
BisI GCNGC 4 cut(s) 54, 159, 403, 406
BlsI GCNGC 4 cut(s) 55, 160, 404, 407
Bme1390I CCNGG 2 cut(s) 50, 280
Bme18I GGWCC 1 cut(s) 46
BmeT110I CYCGRG 1 cut(s) 428
BmgBI CACGTC 1 cut(s) 94
BmgT120I GGNCC 2 cut(s) 46, 276
BmiI GGNNCC 2 cut(s) 165, 205
BmrFI CCNGG 2 cut(s) 50, 280
BmsI GCATC 1 cut(s) 466
BpiI GAAGAC 1 cut(s) 29
Bpu14I TTCGAA 1 cut(s) 344
BpuMI CCSGG 2 cut(s) 50, 280
BsaJI CCNNGG 2 cut(s) 170, 207
BsaXI ACNNNNNCTCC 4 cut(s) 221, 224, 251, 254
Bsc4I CCNNNNNNNGG 2 cut(s) 273, 434
Bse3DI GCAATG 2 cut(s) 46, 340
BseDI CCNNGG 2 cut(s) 170, 207
BseLI CCNNNNNNNGG 2 cut(s) 273, 434
BseMI GCAATG 2 cut(s) 46, 340
BseRI GAGGAG 2 cut(s) 224, 245
BseXI GCAGC 1 cut(s) 417
Bsh1236I CGCG 2 cut(s) 74, 158
BshFI GGCC 1 cut(s) 278
BshNI GGYRCC 1 cut(s) 163
BsiHKCI CYCGRG 1 cut(s) 428
BsiSI CCGG 2 cut(s) 49, 279
BslFI GGGAC 1 cut(s) 411
BslI CCNNNNNNNGG 2 cut(s) 273, 434
BsmAI GTCTC 1 cut(s) 147
BsmBI CGTCTC 1 cut(s) 147
BsmFI GGGAC 1 cut(s) 411
BsnI GGCC 1 cut(s) 278
BsoBI CYCGRG 1 cut(s) 428
Bsp119I TTCGAA 1 cut(s) 344
Bsp143I GATC 1 cut(s) 203
BspACI CCGC 8 cut(s) 10, 19, 53, 108, 158, 161, 274, 402
BspANI GGCC 1 cut(s) 278
BspFNI CGCG 2 cut(s) 74, 158
BspLI GGNNCC 2 cut(s) 165, 205
BspMI ACCTGC 1 cut(s) 446
BspPI GGATC 2 cut(s) 198, 211
BspT104I TTCGAA 1 cut(s) 344
BspT107I GGYRCC 1 cut(s) 163
BsrDI GCAATG 2 cut(s) 46, 340
BssECI CCNNGG 2 cut(s) 170, 207
BssMI GATC 1 cut(s) 203
Bst4CI ACNGT 1 cut(s) 412
BstBI TTCGAA 1 cut(s) 344
BstC8I GCNNGC 3 cut(s) 37, 86, 276
BstFNI CGCG 2 cut(s) 74, 158
BstHHI GCGC 2 cut(s) 74, 517
BstKTI GATC 1 cut(s) 206
BstMAI GTCTC 1 cut(s) 147
BstMBI GATC 1 cut(s) 203
BstMWI GCNNNNNNNGC 2 cut(s) 16, 271
BstSCI CCNGG 2 cut(s) 48, 278
BstUI CGCG 2 cut(s) 74, 158
BstV1I GCAGC 1 cut(s) 417
BstV2I GAAGAC 1 cut(s) 29
BstX2I RGATCY 1 cut(s) 203
BstYI RGATCY 1 cut(s) 203
BsuRI GGCC 1 cut(s) 278
BtgZI GCGATG 2 cut(s) 71, 89
BtrI CACGTC 1 cut(s) 94
BtsI GCAGTG 1 cut(s) 517
BtsIMutI CAGTG 2 cut(s) 335, 517
BveI ACCTGC 1 cut(s) 446
Cac8I GCNNGC 3 cut(s) 37, 86, 276
CfoI GCGC 2 cut(s) 74, 517
Cfr13I GGNCC 2 cut(s) 46, 276
CseI GACGC 1 cut(s) 164
Csp6I GTAC 1 cut(s) 298
CspCI CAANNNNNGTGG 2 cut(s) 156, 191
CviAII CATG 2 cut(s) 469, 540
CviJI RGCY 6 cut(s) 124, 278, 440, 473, 504, 522
CviKI_1 RGCY 6 cut(s) 124, 278, 440, 473, 504, 522
CviQI GTAC 1 cut(s) 298
DpnI GATC 1 cut(s) 205
DpnII GATC 1 cut(s) 203
Eco47I GGWCC 1 cut(s) 46
Eco88I CYCGRG 1 cut(s) 428
Esp3I CGTCTC 1 cut(s) 147
FaeI CATG 2 cut(s) 472, 543
FaiI YATR 4 cut(s) 195, 470, 491, 541
FaqI GGGAC 1 cut(s) 411
FatI CATG 2 cut(s) 468, 539
FauI CCCGC 2 cut(s) 3, 267
Fnu4HI GCNGC 4 cut(s) 54, 159, 403, 406
Fsp4HI GCNGC 4 cut(s) 54, 159, 403, 406
FspBI CTAG 4 cut(s) 254, 441, 482, 519
GlaI GCGC 2 cut(s) 73, 516
GluI GCNGC 4 cut(s) 54, 159, 403, 406
HaeIII GGCC 1 cut(s) 278
HapII CCGG 2 cut(s) 49, 279
HgaI GACGC 1 cut(s) 164
HhaI GCGC 2 cut(s) 74, 517
Hin1II CATG 2 cut(s) 472, 543
Hin6I GCGC 2 cut(s) 72, 515
HinP1I GCGC 2 cut(s) 72, 515
HinfI GANTC 4 cut(s) 64, 111, 250, 530
HpaII CCGG 2 cut(s) 49, 279
HphI GGTGA 1 cut(s) 373
Hpy188I TCNGA 2 cut(s) 116, 208
Hpy188III TCNNGA 3 cut(s) 254, 418, 428
HpyAV CCTTC 3 cut(s) 178, 251, 287
HpyCH4III ACNGT 1 cut(s) 412
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 3 cut(s) 39, 333, 510
HpyF10VI GCNNNNNNNGC 2 cut(s) 16, 271
HpySE526I ACGT 1 cut(s) 93
Hsp92II CATG 2 cut(s) 472, 543
HspAI GCGC 2 cut(s) 72, 515
Kzo9I GATC 1 cut(s) 203
LmnI GCTCC 1 cut(s) 437
LpnPI CCDG 5 cut(s) 62, 292, 341, 380, 441
Lsp1109I GCAGC 1 cut(s) 417
LweI GCATC 1 cut(s) 466
MaeI CTAG 4 cut(s) 254, 441, 482, 519
MaeII ACGT 1 cut(s) 93
MaeIII GTNAC 1 cut(s) 89
MalI GATC 1 cut(s) 205
MboI GATC 1 cut(s) 203
MboII GAAGA 4 cut(s) 34, 201, 232, 358
MflI RGATCY 1 cut(s) 203
MluCI AATT 1 cut(s) 311
MroXI GAANNNNTTC 1 cut(s) 26
MspI CCGG 2 cut(s) 49, 279
MspR9I CCNGG 2 cut(s) 50, 280
MvnI CGCG 2 cut(s) 74, 158
MwoI GCNNNNNNNGC 2 cut(s) 16, 271
NciI CCSGG 2 cut(s) 50, 280
NdeII GATC 1 cut(s) 203
NlaIII CATG 2 cut(s) 472, 543
NlaIV GGNNCC 2 cut(s) 165, 205
NmeAIII GCCGAG 1 cut(s) 48
NmuCI GTSAC 1 cut(s) 89
NspV TTCGAA 1 cut(s) 344
PdmI GAANNNNTTC 1 cut(s) 26
PfeI GAWTC 4 cut(s) 64, 111, 250, 530
PkrI GCNGC 4 cut(s) 55, 160, 404, 407
PspN4I GGNNCC 2 cut(s) 165, 205
PspPI GGNCC 2 cut(s) 46, 276
PsuI RGATCY 1 cut(s) 203
RsaI GTAC 1 cut(s) 299
RsaNI GTAC 1 cut(s) 298
SatI GCNGC 4 cut(s) 54, 159, 403, 406
Sau3AI GATC 1 cut(s) 203
Sau96I GGNCC 2 cut(s) 46, 276
ScrFI CCNGG 2 cut(s) 50, 280
SfaNI GCATC 1 cut(s) 466
SfuI TTCGAA 1 cut(s) 344
SinI GGWCC 1 cut(s) 46
Sse9I AATT 1 cut(s) 311
SsiI CCGC 8 cut(s) 10, 19, 53, 108, 158, 161, 274, 402
SspMI CTAG 4 cut(s) 254, 441, 482, 519
StyD4I CCNGG 2 cut(s) 48, 278
TaaI ACNGT 1 cut(s) 412
TaiI ACGT 1 cut(s) 96
TaqI TCGA 4 cut(s) 30, 98, 344, 460
TasI AATT 1 cut(s) 311
TauI GCSGC 3 cut(s) 56, 161, 405
TfiI GAWTC 4 cut(s) 64, 111, 250, 530
TscAI CASTG 2 cut(s) 335, 517
TseFI GTSAC 1 cut(s) 89
TseI GCWGC 1 cut(s) 405
Tsp45I GTSAC 1 cut(s) 89
TspDTI ATGAA 1 cut(s) 506
TspGWI ACGGA 1 cut(s) 315
TspRI CASTG 2 cut(s) 335, 517
VpaK11BI GGWCC 1 cut(s) 46
XapI RAATTY 1 cut(s) 311
XbaI TCTAGA 1 cut(s) 253
XmnI GAANNNNTTC 1 cut(s) 26
XspI CTAG 4 cut(s) 254, 441, 482, 519
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.