Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0004963

Physical Location & Seq

Genomic Coordinates Reverse (-)

16541155 .. 16542138

Gene Structure 984 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g11250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGGTTGTGCTTCTTCTAATCTCTTCAACCACAACGACGAGTTCTCCCAACTCGGCAGCTCCGCGCTGAGCCACCACATCGTCTCGCTGACTTCCTCCACCTACGGCCTCCTTACTCTCGACCCGCCGCCGCCTGCGCCCACCACTCCGTCGACACCCCCTCCTCGATTCACTCTCGGGTCCATTTTCCCGAGCCCCTTGTCCCAGCCCAAGTCGCTCGAGTCCGAACCCAAGTCACTCTTGTCCGACCCGAGACCGCTGCCTTCCGACCCGGAAGTCATTAACTCATGGGAGCTTATGGACGGGCTTGACGCCGACAGCTTCAGATTCTCGCCGCTTCCGCCGCCCAAACCCTTCGTTTCCTTTGACCCAAAAACCCTCGATAAAGAAAACTCCAACCCGAATCGCGCAATTCTCAAATCTCCGTACGAAAGCGTCTTCCGGGTGAACAACAAGGACCCACTTGACCGGTTCGAGAAAATATGCCCGCCGGGCGGGGAAAACAAAGTCGTTGTCTACACGACGACGCTGCGAGGAGTGCGGCGGACTTTTGAGGAGTGCAACGCTGTCCGGGCAGAGATAGAAGGCCTCGGGGTGATGATTGTCGAGCGTGACGTGTCAATGGATCGCGGGTTCAGAGAAGAGTTGAGCGACTTGATGAAGGGGAAAGGGAAGGAGGCGGCGGTGCCGCCGCGGGTGTTTGTGAAGGGGAGATATATAGGCGGCTCTGAGGAGGTGCTGAAGATTTTGGAGGAGGGTTTGCTGGGTGAGATTCTTGCTGGGTGTCCAAAGAAAAAAGCTGGGTCTGTGTGTGAAGGGTGTGGGGAGGCAAGGTTCTTGCCCTGCTTCCAGTGCAATGGGAGTTCAAAGATGGTGCTGATAGTGAATGATGATGTGGCGGGGCAGCGGAAGGGGACGACGGTGGTGACGAGGTGTCCTGAGTGTAATGAGAATGGGCTGGTGCTTTGCCCAATTTGTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glutaredoxin

Protein Analysis

328

Amino Acids

35.54

Weight (kDa)

5.49

Isoelectric Point (pI)

46.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glutaredoxin	PF00462	170 - 240	5e-09	Glutaredoxin
GRXCR1-2_C	PF23733	271 - 327	1e-17	GRXCR1/2, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32760 AT4G10630
fragaria_vesca	FvH4_5g10700
malus_domestica	MD06G1121200.v1.1 MD09G1197100.v1.1 MD14G1137800.v1.1
prunus_persica	Prupe.5G131800_v2.0.a1
pyrus_communis	pycom06g11250 pycom14g11300
rosa_chinensis	RchiOBHm_Chr1g0342161 RchiOBHm_Chr7g0187441
rosa_laevigata	RLG00000001600 RLG00000004781 RLG00000009467
rosa_multiflora	Rmu_sc0001230.1_g000015 Rmu_sc0003363.1_g000014 Rmu_sc0009146.1_g000005
rosa_roxburghii	Rroxscaffold_3G00267420
rosa_rugosa	Rorug06G0355300 Rorug06G0481600
rosa_samantha	Rh1CG026900 Rh5DG426300 Rh7AG086100 Rh7BG087600 Rh7CG087000 Rh7DG088600 Rh7DG307400 Rh7DG445500
rosa_wichuraiana	Rw2G033920 Rw7G007600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	275
AccB1I	GGYRCC	1 cut(s)	685
AccI	GTMKAC	2 cut(s)	152, 516
AccII	CGCG	4 cut(s)	65, 408, 630, 694
AclWI	GGATC	1 cut(s)	633
AcuI	CTGAAG	2 cut(s)	307, 761
AcyI	GRCGYC	1 cut(s)	312
AfaI	GTAC	1 cut(s)	428
AfiI	CCNNNNNNNGG	1 cut(s)	494
AflIII	ACRYGT	1 cut(s)	615
AgeI	ACCGGT	1 cut(s)	468
AgsI	TTSAA	2 cut(s)	28, 867
AhdI	GACNNNNNGTC	1 cut(s)	933
AjiI	CACGTC	1 cut(s)	616
AloI	GAACNNNNNNTCC	4 cut(s)	617, 649, 818, 850
AluBI	AGCT	5 cut(s)	60, 295, 321, 800, 981
AluI	AGCT	5 cut(s)	60, 295, 321, 800, 981
Alw26I	GTCTC	2 cut(s)	88, 247
AlwI	GGATC	1 cut(s)	633
Ama87I	CYCGRG	5 cut(s)	176, 190, 218, 250, 590
AoxI	GGCC	2 cut(s)	106, 586
ApeKI	GCWGC	4 cut(s)	57, 259, 529, 904
ArsI	GACNNNNNNTTYG	2 cut(s)	498, 530
AsiGI	ACCGGT	1 cut(s)	468
AspLEI	GCGC	3 cut(s)	67, 139, 410
AspS9I	GGNCC	2 cut(s)	180, 457
AsuC2I	CCSGG	4 cut(s)	272, 443, 492, 572
AsuHPI	GGTGA	4 cut(s)	457, 607, 779, 937
AvaI	CYCGRG	5 cut(s)	176, 190, 218, 250, 590
AvaII	GGWCC	2 cut(s)	180, 457
BanI	GGYRCC	1 cut(s)	685
BanII	GRGCYC	1 cut(s)	197
BbsI	GAAGAC	1 cut(s)	430
BbvI	GCAGC	4 cut(s)	69, 246, 516, 916
BccI	CCATC	1 cut(s)	865
BceAI	ACGGC	1 cut(s)	121
BcgI	CGANNNNNNTGC	4 cut(s)	241, 275, 511, 545
BcnI	CCSGG	4 cut(s)	272, 443, 492, 572
BcoDI	GTCTC	2 cut(s)	88, 247
BglI	GCCNNNNNGGC	1 cut(s)	492
BlpI	GCTNAGC	1 cut(s)	68
Bme1390I	CCNGG	4 cut(s)	272, 443, 492, 572
Bme18I	GGWCC	2 cut(s)	180, 457
BmeRI	GACNNNNNGTC	1 cut(s)	933
BmeT110I	CYCGRG	5 cut(s)	176, 190, 218, 250, 590
BmgBI	CACGTC	1 cut(s)	616
BmgT120I	GGNCC	2 cut(s)	180, 457
BmiI	GGNNCC	3 cut(s)	181, 459, 687
BmrFI	CCNGG	4 cut(s)	272, 443, 492, 572
BpiI	GAAGAC	1 cut(s)	430
Bpu1102I	GCTNAGC	1 cut(s)	68
BpuMI	CCSGG	4 cut(s)	272, 443, 492, 572
BsaHI	GRCGYC	1 cut(s)	312
BsaI	GGTCTC	1 cut(s)	247
BsaJI	CCNNGG	2 cut(s)	589, 692
BsaWI	WCCGGW	1 cut(s)	468
BsaXI	ACNNNNNCTCC	6 cut(s)	29, 59, 145, 175, 818, 848
Bsc4I	CCNNNNNNNGG	1 cut(s)	494
Bse118I	RCCGGY	1 cut(s)	468
Bse1I	ACTGG	1 cut(s)	850
Bse3DI	GCAATG	1 cut(s)	862
BseDI	CCNNGG	2 cut(s)	589, 692
BseLI	CCNNNNNNNGG	1 cut(s)	494
BseMI	GCAATG	1 cut(s)	862
BseMII	CTCAG	3 cut(s)	59, 720, 930
BseNI	ACTGG	1 cut(s)	850
BseRI	GAGGAG	5 cut(s)	153, 549, 569, 746, 767
BseXI	GCAGC	4 cut(s)	69, 246, 516, 916
BseYI	CCCAGC	4 cut(s)	204, 763, 779, 800
Bsh1236I	CGCG	4 cut(s)	65, 408, 630, 694
BshFI	GGCC	2 cut(s)	108, 588
BshNI	GGYRCC	1 cut(s)	685
BshTI	ACCGGT	1 cut(s)	468
BsiHKCI	CYCGRG	5 cut(s)	176, 190, 218, 250, 590
BsiSI	CCGG	5 cut(s)	272, 442, 469, 491, 571
BsiWI	CGTACG	1 cut(s)	426
BslFI	GGGAC	2 cut(s)	187, 928
BslI	CCNNNNNNNGG	1 cut(s)	494
BsmAI	GTCTC	2 cut(s)	88, 247
BsmBI	CGTCTC	1 cut(s)	88
BsmFI	GGGAC	2 cut(s)	187, 928
BsnI	GGCC	2 cut(s)	108, 588
Bso31I	GGTCTC	1 cut(s)	247
BsoBI	CYCGRG	5 cut(s)	176, 190, 218, 250, 590
Bsp1286I	GDGCHC	1 cut(s)	197
Bsp143I	GATC	1 cut(s)	625
Bsp1720I	GCTNAGC	1 cut(s)	68
BspANI	GGCC	2 cut(s)	108, 588
BspCNI	CTCAG	3 cut(s)	60, 721, 931
BspFNI	CGCG	4 cut(s)	65, 408, 630, 694
BspLI	GGNNCC	3 cut(s)	181, 459, 687
BspPI	GGATC	1 cut(s)	633
BspT107I	GGYRCC	1 cut(s)	685
BspTNI	GGTCTC	1 cut(s)	247
BsrDI	GCAATG	1 cut(s)	862
BsrFI	RCCGGY	1 cut(s)	468
BsrI	ACTGG	1 cut(s)	850
BssAI	RCCGGY	1 cut(s)	468
BssECI	CCNNGG	2 cut(s)	589, 692
BssMI	GATC	1 cut(s)	625
BssNI	GRCGYC	1 cut(s)	312
Bst4CI	ACNGT	1 cut(s)	922
Bst6I	CTCTTC	2 cut(s)	29, 636
BstACI	GRCGYC	1 cut(s)	312
BstC8I	GCNNGC	2 cut(s)	135, 488
BstDEI	CTNAG	3 cut(s)	68, 729, 939
BstDSI	CCRYGG	1 cut(s)	692
BstFNI	CGCG	4 cut(s)	65, 408, 630, 694
BstHHI	GCGC	3 cut(s)	67, 139, 410
BstKTI	GATC	1 cut(s)	628
BstMAI	GTCTC	2 cut(s)	88, 247
BstMBI	GATC	1 cut(s)	625
BstMWI	GCNNNNNNNGC	8 cut(s)	136, 214, 340, 343, 492, 538, 572, 852
BstSCI	CCNGG	4 cut(s)	270, 441, 490, 570
BstUI	CGCG	4 cut(s)	65, 408, 630, 694
BstV1I	GCAGC	4 cut(s)	69, 246, 516, 916
BstV2I	GAAGAC	1 cut(s)	430
BstXI	CCANNNNNNTGG	1 cut(s)	857
BsuRI	GGCC	2 cut(s)	108, 588
BtgI	CCRYGG	1 cut(s)	692
BtrI	CACGTC	1 cut(s)	616
BtsIMutI	CAGTG	1 cut(s)	857
Cac8I	GCNNGC	2 cut(s)	135, 488
CfoI	GCGC	3 cut(s)	67, 139, 410
Cfr10I	RCCGGY	1 cut(s)	468
Cfr13I	GGNCC	2 cut(s)	180, 457
Cfr42I	CCGCGG	1 cut(s)	695
CseI	GACGC	3 cut(s)	320, 424, 535
Csp6I	GTAC	1 cut(s)	427
CspAI	ACCGGT	1 cut(s)	468
CviAII	CATG	1 cut(s)	288
CviQI	GTAC	1 cut(s)	427
DdeI	CTNAG	3 cut(s)	68, 729, 939
DpnI	GATC	1 cut(s)	627
DpnII	GATC	1 cut(s)	625
DrdI	GACNNNNNNGTC	1 cut(s)	275
DriI	GACNNNNNGTC	1 cut(s)	933
DseDI	GACNNNNNNGTC	1 cut(s)	275
Eam1104I	CTCTTC	2 cut(s)	29, 636
Eam1105I	GACNNNNNGTC	1 cut(s)	933
EarI	CTCTTC	2 cut(s)	29, 636
EciI	GGCGGA	2 cut(s)	330, 559
Eco147I	AGGCCT	1 cut(s)	588
Eco24I	GRGCYC	1 cut(s)	197
Eco31I	GGTCTC	1 cut(s)	247
Eco47I	GGWCC	2 cut(s)	180, 457
Eco57I	CTGAAG	2 cut(s)	307, 761
Eco88I	CYCGRG	5 cut(s)	176, 190, 218, 250, 590
EcoO109I	RGGNCCY	1 cut(s)	457
EcoT38I	GRGCYC	1 cut(s)	197
Esp3I	CGTCTC	1 cut(s)	88
FaeI	CATG	1 cut(s)	291
FaiI	YATR	5 cut(s)	289, 299, 484, 717, 719
FalI	AAGNNNNNCTT	2 cut(s)	224, 256
FaqI	GGGAC	2 cut(s)	187, 928
FatI	CATG	1 cut(s)	287
FauI	CCCGC	6 cut(s)	132, 488, 495, 623, 687, 892
FblI	GTMKAC	2 cut(s)	152, 516
FriOI	GRGCYC	1 cut(s)	197
GlaI	GCGC	3 cut(s)	66, 138, 409
GsaI	CCCAGC	4 cut(s)	208, 767, 783, 804
HaeIII	GGCC	2 cut(s)	108, 588
HapII	CCGG	5 cut(s)	272, 442, 469, 491, 571
HgaI	GACGC	3 cut(s)	320, 424, 535
HhaI	GCGC	3 cut(s)	67, 139, 410
Hin1I	GRCGYC	1 cut(s)	312
Hin1II	CATG	1 cut(s)	291
Hin6I	GCGC	3 cut(s)	65, 137, 408
HinP1I	GCGC	3 cut(s)	65, 137, 408
HincII	GTYRAC	1 cut(s)	153
HindII	GTYRAC	1 cut(s)	153
HinfI	GANTC	5 cut(s)	168, 221, 327, 403, 772
HpaII	CCGG	5 cut(s)	272, 442, 469, 491, 571
HphI	GGTGA	4 cut(s)	457, 607, 779, 937
Hpy166II	GTNNAC	3 cut(s)	153, 448, 517
Hpy188I	TCNGA	6 cut(s)	226, 247, 268, 326, 638, 730
Hpy188III	TCNNGA	4 cut(s)	119, 190, 475, 938
Hpy8I	GTNNAC	3 cut(s)	153, 448, 517
Hpy99I	CGWCG	5 cut(s)	41, 154, 526, 529, 922
HpyAV	CCTTC	8 cut(s)	273, 364, 578, 655, 667, 700, 809, 904
HpyCH4III	ACNGT	1 cut(s)	922
HpyCH4IV	ACGT	1 cut(s)	615
HpyCH4V	TGCA	2 cut(s)	561, 855
HpyF10VI	GCNNNNNNNGC	8 cut(s)	136, 214, 340, 343, 492, 538, 572, 852
HpyF3I	CTNAG	3 cut(s)	68, 729, 939
HpySE526I	ACGT	1 cut(s)	615
Hsp92I	GRCGYC	1 cut(s)	312
Hsp92II	CATG	1 cut(s)	291
HspAI	GCGC	3 cut(s)	65, 137, 408
KspI	CCGCGG	1 cut(s)	695
Kzo9I	GATC	1 cut(s)	625
LmnI	GCTCC	2 cut(s)	65, 292
Lsp1109I	GCAGC	4 cut(s)	69, 246, 516, 916
MaeII	ACGT	1 cut(s)	615
MaeIII	GTNAC	3 cut(s)	234, 611, 925
MalI	GATC	1 cut(s)	627
MboI	GATC	1 cut(s)	625
MboII	GAAGA	5 cut(s)	6, 16, 430, 653, 754
MhlI	GDGCHC	1 cut(s)	197
MluCI	AATT	2 cut(s)	411, 972
MlyI	GAGTC	1 cut(s)	230
MmeI	TCCRAC	3 cut(s)	270, 291, 420
MseI	TTAA	1 cut(s)	282
MspA1I	CMGCKG	3 cut(s)	259, 694, 907
MspI	CCGG	5 cut(s)	272, 442, 469, 491, 571
MspR9I	CCNGG	4 cut(s)	272, 443, 492, 572
MvnI	CGCG	4 cut(s)	65, 408, 630, 694
MwoI	GCNNNNNNNGC	8 cut(s)	136, 214, 340, 343, 492, 538, 572, 852
NciI	CCSGG	4 cut(s)	272, 443, 492, 572
NdeII	GATC	1 cut(s)	625
NlaIII	CATG	1 cut(s)	291
NlaIV	GGNNCC	3 cut(s)	181, 459, 687
NmeAIII	GCCGAG	1 cut(s)	33
NmuCI	GTSAC	3 cut(s)	234, 611, 925
PaeR7I	CTCGAG	1 cut(s)	218
PceI	AGGCCT	1 cut(s)	588
PcsI	WCGNNNNNNNCGW	2 cut(s)	612, 926
PfeI	GAWTC	4 cut(s)	168, 327, 403, 772
Pfl23II	CGTACG	1 cut(s)	426
PinAI	ACCGGT	1 cut(s)	468
PleI	GAGTC	1 cut(s)	229
PpsI	GAGTC	1 cut(s)	229
PpuMI	RGGWCCY	1 cut(s)	457
Psp5II	RGGWCCY	1 cut(s)	457
PspFI	CCCAGC	4 cut(s)	204, 763, 779, 800
PspLI	CGTACG	1 cut(s)	426
PspN4I	GGNNCC	3 cut(s)	181, 459, 687
PspPI	GGNCC	2 cut(s)	180, 457
PspPPI	RGGWCCY	1 cut(s)	457
PspXI	VCTCGAGB	1 cut(s)	218
RsaI	GTAC	1 cut(s)	428
RsaNI	GTAC	1 cut(s)	427
SacII	CCGCGG	1 cut(s)	695
SalI	GTCGAC	1 cut(s)	151
SaqAI	TTAA	1 cut(s)	282
Sau3AI	GATC	1 cut(s)	625
Sau96I	GGNCC	2 cut(s)	180, 457
SchI	GAGTC	1 cut(s)	230
ScrFI	CCNGG	4 cut(s)	272, 443, 492, 572
SduI	GDGCHC	1 cut(s)	197
Sfr274I	CTCGAG	1 cut(s)	218
Sfr303I	CCGCGG	1 cut(s)	695
SgrBI	CCGCGG	1 cut(s)	695
SinI	GGWCC	2 cut(s)	180, 457
SlaI	CTCGAG	1 cut(s)	218
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
Sse9I	AATT	2 cut(s)	411, 972
SseBI	AGGCCT	1 cut(s)	588
StuI	AGGCCT	1 cut(s)	588
StyD4I	CCNGG	4 cut(s)	270, 441, 490, 570
TaaI	ACNGT	1 cut(s)	922
TaiI	ACGT	1 cut(s)	618
TaqI	TCGA	7 cut(s)	120, 152, 166, 219, 381, 474, 606
TasI	AATT	2 cut(s)	411, 972
TauI	GCSGC	9 cut(s)	130, 133, 337, 346, 544, 683, 691, 694, 726
TfiI	GAWTC	4 cut(s)	168, 327, 403, 772
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TscAI	CASTG	1 cut(s)	857
TseFI	GTSAC	3 cut(s)	234, 611, 925
TseI	GCWGC	4 cut(s)	57, 259, 529, 904
Tsp45I	GTSAC	3 cut(s)	234, 611, 925
TspDTI	ATGAA	1 cut(s)	674
TspGWI	ACGGA	2 cut(s)	138, 414
TspRI	CASTG	1 cut(s)	857
VpaK11BI	GGWCC	2 cut(s)	180, 457
XhoI	CTCGAG	1 cut(s)	218
XmiI	GTMKAC	2 cut(s)	152, 516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.