Rmu_sc0009146.1_g000005

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009146.1
OG0004963
Physical Location & Seq
Forward (+)
30655 .. 31283
629 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009146.1_g000005.1.cds

Sequence Viewer

Length: 558 bp
atggtcggcctcgacgccgacagcttccggttctcgccgctcccgccgccgaaacccttctcgattcgaaccccgaaaaccgcggataaagagaactccaacccgaaccggtctgttttagtcaaaggcccgctcgaccggtttgagagtatatgcccgccggggggagagaacaaactagtgctgtatacgacgtcattgcggggagtgcggaagactttagaggcgtgcaatgccgtccgggcggcgatggagtatctcggcgtgatggtctgcgagcgtaacgtgtcgatggatcgcggatttcgagaagagctgaatgacttgatggaggggaaaggcagagacgcggtggtgccaccgaggttgtttgtgaagggaagatatgtgggtggatctgaggaggtgttgaagattgtggaggaggggttgttgggggagattctagaagtgcaatgggagttcgaagatggtgctggtggtgaaagaagacgaggtggtggtgcggcagaggcagtgaggcggcggcacggtggtcgtgaggtgtccctagtgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

185

Amino Acids

20.37

Weight (kDa)

7.69

Isoelectric Point (pI)

44.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 197
AccB1I GGYRCC 1 cut(s) 355
AccBSI CCGCTC 2 cut(s) 40, 133
AccI GTMKAC 1 cut(s) 188
AccII CGCG 3 cut(s) 83, 300, 350
AclWI GGATC 2 cut(s) 303, 403
AcyI GRCGYC 2 cut(s) 15, 194
AfiI CCNNNNNNNGG 2 cut(s) 163, 164
AflIII ACRYGT 1 cut(s) 285
AgeI ACCGGT 2 cut(s) 108, 138
AgsI TTSAA 1 cut(s) 412
AhlI ACTAGT 1 cut(s) 178
AluBI AGCT 2 cut(s) 24, 316
AluI AGCT 2 cut(s) 24, 316
Alw26I GTCTC 1 cut(s) 339
AlwI GGATC 2 cut(s) 303, 403
AoxI GGCC 2 cut(s) 7, 127
AsiGI ACCGGT 2 cut(s) 108, 138
Asp700I GAANNNNTTC 1 cut(s) 56
AspS9I GGNCC 1 cut(s) 128
AsuC2I CCSGG 2 cut(s) 162, 242
AsuHPI GGTGA 1 cut(s) 494
AsuII TTCGAA 2 cut(s) 67, 465
BanI GGYRCC 1 cut(s) 355
BbsI GAAGAC 2 cut(s) 221, 496
BccI CCATC 5 cut(s) 244, 262, 286, 322, 464
BceAI ACGGC 1 cut(s) 221
BcgI CGANNNNNNTGC 6 cut(s) 181, 215, 455, 489, 518, 552
BcnI CCSGG 2 cut(s) 162, 242
BcoDI GTCTC 1 cut(s) 339
BcuI ACTAGT 1 cut(s) 178
BfaI CTAG 3 cut(s) 179, 446, 551
BglI GCCNNNNNGGC 1 cut(s) 242
BisI GCNGC 6 cut(s) 38, 47, 246, 507, 524, 527
BlsI GCNGC 6 cut(s) 39, 48, 247, 508, 525, 528
Bme1390I CCNGG 2 cut(s) 162, 242
BmgT120I GGNCC 1 cut(s) 128
BmiI GGNNCC 1 cut(s) 357
BmrFI CCNGG 2 cut(s) 162, 242
BpiI GAAGAC 2 cut(s) 221, 496
Bpu14I TTCGAA 2 cut(s) 67, 465
BpuMI CCSGG 2 cut(s) 162, 242
BsaHI GRCGYC 2 cut(s) 15, 194
BsaJI CCNNGG 3 cut(s) 81, 161, 362
BsaWI WCCGGW 3 cut(s) 27, 108, 138
BsaXI ACNNNNNCTCC 4 cut(s) 413, 416, 443, 446
Bsc4I CCNNNNNNNGG 2 cut(s) 163, 164
Bse118I RCCGGY 2 cut(s) 108, 138
Bse3DI GCAATG 3 cut(s) 197, 238, 461
BseDI CCNNGG 3 cut(s) 81, 161, 362
BseLI CCNNNNNNNGG 2 cut(s) 163, 164
BseMI GCAATG 3 cut(s) 197, 238, 461
BseMII CTCAG 1 cut(s) 390
BseRI GAGGAG 2 cut(s) 416, 437
Bsh1236I CGCG 3 cut(s) 83, 300, 350
Bsh1285I CGRYCG 1 cut(s) 139
BshFI GGCC 2 cut(s) 9, 129
BshNI GGYRCC 1 cut(s) 355
BshTI ACCGGT 2 cut(s) 108, 138
BsiEI CGRYCG 1 cut(s) 139
BsiSI CCGG 5 cut(s) 28, 109, 139, 161, 241
BslFI GGGAC 1 cut(s) 532
BslI CCNNNNNNNGG 2 cut(s) 163, 164
BsmAI GTCTC 1 cut(s) 339
BsmBI CGTCTC 1 cut(s) 339
BsmFI GGGAC 1 cut(s) 532
BsnI GGCC 2 cut(s) 9, 129
Bsp119I TTCGAA 2 cut(s) 67, 465
Bsp143I GATC 2 cut(s) 295, 395
BspANI GGCC 2 cut(s) 9, 129
BspCNI CTCAG 1 cut(s) 391
BspFNI CGCG 3 cut(s) 83, 300, 350
BspLI GGNNCC 1 cut(s) 357
BspPI GGATC 2 cut(s) 303, 403
BspQI GCTCTTC 1 cut(s) 306
BspT104I TTCGAA 2 cut(s) 67, 465
BspT107I GGYRCC 1 cut(s) 355
BsrBI CCGCTC 2 cut(s) 40, 133
BsrDI GCAATG 3 cut(s) 197, 238, 461
BsrFI RCCGGY 2 cut(s) 108, 138
BssAI RCCGGY 2 cut(s) 108, 138
BssECI CCNNGG 3 cut(s) 81, 161, 362
BssMI GATC 2 cut(s) 295, 395
BssNAI GTATAC 1 cut(s) 189
BssNI GRCGYC 2 cut(s) 15, 194
Bst1107I GTATAC 1 cut(s) 189
Bst4CI ACNGT 1 cut(s) 533
Bst6I CTCTTC 1 cut(s) 306
BstACI GRCGYC 2 cut(s) 15, 194
BstBI TTCGAA 2 cut(s) 67, 465
BstC8I GCNNGC 4 cut(s) 131, 158, 229, 278
BstDEI CTNAG 1 cut(s) 399
BstDSI CCRYGG 1 cut(s) 81
BstFNI CGCG 3 cut(s) 83, 300, 350
BstKTI GATC 2 cut(s) 298, 398
BstMAI GTCTC 1 cut(s) 339
BstMBI GATC 2 cut(s) 295, 395
BstMCI CGRYCG 1 cut(s) 139
BstMWI GCNNNNNNNGC 6 cut(s) 43, 46, 208, 233, 242, 512
BstSCI CCNGG 2 cut(s) 160, 240
BstUI CGCG 3 cut(s) 83, 300, 350
BstV2I GAAGAC 2 cut(s) 221, 496
BstX2I RGATCY 1 cut(s) 395
BstYI RGATCY 1 cut(s) 395
BstZ17I GTATAC 1 cut(s) 189
BsuRI GGCC 2 cut(s) 9, 129
BtgI CCRYGG 1 cut(s) 81
BtgZI GCGATG 1 cut(s) 263
BtsI GCAGTG 1 cut(s) 522
BtsIMutI CAGTG 1 cut(s) 522
Cac8I GCNNGC 4 cut(s) 131, 158, 229, 278
Cfr10I RCCGGY 2 cut(s) 108, 138
Cfr13I GGNCC 1 cut(s) 128
Cfr42I CCGCGG 1 cut(s) 84
CseI GACGC 2 cut(s) 23, 356
CspAI ACCGGT 2 cut(s) 108, 138
CspCI CAANNNNNGTGG 2 cut(s) 348, 383
CviJI RGCY 4 cut(s) 9, 24, 129, 316
CviKI_1 RGCY 4 cut(s) 9, 24, 129, 316
DdeI CTNAG 1 cut(s) 399
DpnI GATC 2 cut(s) 297, 397
DpnII GATC 2 cut(s) 295, 395
Eam1104I CTCTTC 1 cut(s) 306
EarI CTCTTC 1 cut(s) 306
Esp3I CGTCTC 1 cut(s) 339
FaiI YATR 4 cut(s) 152, 154, 189, 387
FaqI GGGAC 1 cut(s) 532
FauI CCCGC 4 cut(s) 51, 138, 165, 195
FblI GTMKAC 1 cut(s) 188
Fnu4HI GCNGC 6 cut(s) 38, 47, 246, 507, 524, 527
Fsp4HI GCNGC 6 cut(s) 38, 47, 246, 507, 524, 527
FspBI CTAG 3 cut(s) 179, 446, 551
GluI GCNGC 6 cut(s) 38, 47, 246, 507, 524, 527
HaeIII GGCC 2 cut(s) 9, 129
HapII CCGG 5 cut(s) 28, 109, 139, 161, 241
HgaI GACGC 2 cut(s) 23, 356
Hin1I GRCGYC 2 cut(s) 15, 194
HinfI GANTC 2 cut(s) 64, 442
HpaII CCGG 5 cut(s) 28, 109, 139, 161, 241
HphI GGTGA 1 cut(s) 494
Hpy166II GTNNAC 1 cut(s) 189
Hpy188I TCNGA 1 cut(s) 400
Hpy188III TCNNGA 4 cut(s) 61, 308, 446, 539
Hpy8I GTNNAC 1 cut(s) 189
Hpy99I CGWCG 2 cut(s) 17, 196
HpyAV CCTTC 2 cut(s) 67, 370
HpyCH4III ACNGT 1 cut(s) 533
HpyCH4IV ACGT 2 cut(s) 194, 285
HpyCH4V TGCA 2 cut(s) 231, 454
HpyF10VI GCNNNNNNNGC 6 cut(s) 43, 46, 208, 233, 242, 512
HpyF3I CTNAG 1 cut(s) 399
HpySE526I ACGT 2 cut(s) 194, 285
Hsp92I GRCGYC 2 cut(s) 15, 194
KspI CCGCGG 1 cut(s) 84
Kzo9I GATC 2 cut(s) 295, 395
LguI GCTCTTC 1 cut(s) 306
LmnI GCTCC 1 cut(s) 45
LpnPI CCDG 6 cut(s) 41, 122, 152, 174, 254, 462
MaeI CTAG 3 cut(s) 179, 446, 551
MaeII ACGT 2 cut(s) 194, 285
MaeIII GTNAC 1 cut(s) 281
MalI GATC 2 cut(s) 297, 397
MbiI CCGCTC 2 cut(s) 40, 133
MboI GATC 2 cut(s) 295, 395
MboII GAAGA 6 cut(s) 226, 323, 393, 424, 479, 501
MflI RGATCY 1 cut(s) 395
MmeI TCCRAC 1 cut(s) 123
MroXI GAANNNNTTC 1 cut(s) 56
MspA1I CMGCKG 1 cut(s) 83
MspI CCGG 5 cut(s) 28, 109, 139, 161, 241
MspR9I CCNGG 2 cut(s) 162, 242
MvnI CGCG 3 cut(s) 83, 300, 350
MwoI GCNNNNNNNGC 6 cut(s) 43, 46, 208, 233, 242, 512
NciI CCSGG 2 cut(s) 162, 242
NdeII GATC 2 cut(s) 295, 395
NlaIV GGNNCC 1 cut(s) 357
NmeAIII GCCGAG 1 cut(s) 240
NspV TTCGAA 2 cut(s) 67, 465
PciSI GCTCTTC 1 cut(s) 306
PcsI WCGNNNNNNNCGW 1 cut(s) 304
PdmI GAANNNNTTC 1 cut(s) 56
PfeI GAWTC 2 cut(s) 64, 442
PinAI ACCGGT 2 cut(s) 108, 138
PkrI GCNGC 6 cut(s) 39, 48, 247, 508, 525, 528
PspN4I GGNNCC 1 cut(s) 357
PspPI GGNCC 1 cut(s) 128
PsuI RGATCY 1 cut(s) 395
SacII CCGCGG 1 cut(s) 84
SapI GCTCTTC 1 cut(s) 306
SatI GCNGC 6 cut(s) 38, 47, 246, 507, 524, 527
Sau3AI GATC 2 cut(s) 295, 395
Sau96I GGNCC 1 cut(s) 128
ScrFI CCNGG 2 cut(s) 162, 242
SetI ASST 8 cut(s) 26, 197, 288, 318, 368, 408, 499, 546
Sfr303I CCGCGG 1 cut(s) 84
SfuI TTCGAA 2 cut(s) 67, 465
SgrBI CCGCGG 1 cut(s) 84
SpeI ACTAGT 1 cut(s) 178
SspMI CTAG 3 cut(s) 179, 446, 551
StyD4I CCNGG 2 cut(s) 160, 240
TaaI ACNGT 1 cut(s) 533
TaiI ACGT 2 cut(s) 197, 288
TaqI TCGA 7 cut(s) 12, 62, 67, 135, 290, 307, 465
TauI GCSGC 6 cut(s) 40, 49, 248, 509, 526, 529
TfiI GAWTC 2 cut(s) 64, 442
TscAI CASTG 1 cut(s) 522
TspRI CASTG 1 cut(s) 522
XbaI TCTAGA 1 cut(s) 445
XmiI GTMKAC 1 cut(s) 188
XmnI GAANNNNTTC 1 cut(s) 56
XspI CTAG 3 cut(s) 179, 446, 551
ZraI GACGTC 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.