Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0004963

Physical Location & Seq

Genomic Coordinates Reverse (-)

12682230 .. 12683213

Gene Structure 984 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G131800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGGCTGTGTATCTTCCAATCTCTTCAACCACGACGACGAGTTCACCCAACTCGGTAGCTCGGCACTAAGTCACCACATCGTCTCGCTCACCTCCTCCACCTACGGCCTCCTCACTCTCGACCCACCGCCGCCGCAGACGCCCACAACTCCGCCCACCCCACCGTCTAGATTTACTCTTGGGTCCATTTTCCCGAGCCCGCTCTGCGAACCCAAGTCGCTCTGGTCAGACCCGAAACCGCTCCGTTCCGAACCCAGACCCCTCCGGTCCGACCCGGAGGTTATCAACTCATGGGAGCTCATGGCCGGCCTCGACGCCGATAGCTTCCGATTCTCGCCGCTCCCCCCGCCCAAAGCCTTCAACTTTAGAGACCCAAAAACTGCCGGTAAAGAAAACTCCAACCCCAATCGCGGAATTTTCAAGTCTCCGAACGACGGCGTTTTCGGCGTGAAGAACAAGGAGGACCCACTTGACCGGTTCGAGAAGATATGCCCGCCGGCCGGAGAAAACAAGGTGGTGGTCTATACGACGACGTTGCGAGGTGTTCGGAGGACTTTCGAGGCGTGCAACGCCGTTCGAGCGGCCATAGAAGGACTCGGGGTGATGATTGTCGAGCGCGACGTGTCGATGGATCGTGGGTTCAGAGAAGAGCTGAGGGATTTGATGGACGGGAAAGAGGAGGCAGGGGTGCCTCCAAGGGTGTTTGTGAAGGGGAGATATGTGGGTGGGGCTGAGGAGGTGTTGAAGATTTTGGAGGAGGGTTTGTTGGGTGCGATTCTTGATGGGTGTCCAAAGAAAAAAGCTGGGTCTGTTTGTGAGGGGTGTGGGGAGGCCAAGTTCTTGCCCTGTTTTCAGTGCAATGGGAGTTCAAAGATGGTGTTGGTGGTGAAGGAAGAATTGGGTCAGAGGCAGGGGAGCACTGTGGTGGTCAGGTGCCCTGAGTGTAATGAGAATGGGTTGGTGCTTTGCCCAATTTGTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glutaredoxin

Protein Analysis

328

Amino Acids

35.58

Weight (kDa)

5.83

Isoelectric Point (pI)

47.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32760 AT4G10630
fragaria_vesca	FvH4_5g10700
malus_domestica	MD06G1121200.v1.1 MD09G1197100.v1.1 MD14G1137800.v1.1
prunus_persica	Prupe.5G131800_v2.0.a1
pyrus_communis	pycom06g11250 pycom14g11300
rosa_chinensis	RchiOBHm_Chr1g0342161 RchiOBHm_Chr7g0187441
rosa_laevigata	RLG00000001600 RLG00000004781 RLG00000009467
rosa_multiflora	Rmu_sc0001230.1_g000015 Rmu_sc0003363.1_g000014 Rmu_sc0009146.1_g000005
rosa_roxburghii	Rroxscaffold_3G00267420
rosa_rugosa	Rorug06G0355300 Rorug06G0481600
rosa_samantha	Rh1CG026900 Rh5DG426300 Rh7AG086100 Rh7BG087600 Rh7CG087000 Rh7DG088600 Rh7DG307400 Rh7DG445500
rosa_wichuraiana	Rw2G033920 Rw7G007600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	688, 933
AccBSI	CCGCTC	4 cut(s)	202, 241, 340, 581
AccII	CGCG	2 cut(s)	411, 618
AclWI	GGATC	1 cut(s)	639
AcoI	YGGCCR	3 cut(s)	303, 498, 582
AcsI	RAATTY	1 cut(s)	414
AcyI	GRCGYC	2 cut(s)	140, 315
AfiI	CCNNNNNNNGG	3 cut(s)	410, 434, 500
AflIII	ACRYGT	1 cut(s)	621
AgeI	ACCGGT	1 cut(s)	474
AgsI	TTSAA	5 cut(s)	28, 361, 421, 745, 870
AjiI	CACGTC	1 cut(s)	622
AjuI	GAANNNNNNNTTGG	2 cut(s)	881, 913
AleI	CACNNNNGTG	1 cut(s)	923
AloI	GAACNNNNNNTCC	4 cut(s)	623, 655, 821, 853
AluBI	AGCT	6 cut(s)	60, 298, 324, 652, 803, 981
AluI	AGCT	6 cut(s)	60, 298, 324, 652, 803, 981
Alw21I	GWGCWC	2 cut(s)	300, 920
Alw26I	GTCTC	3 cut(s)	88, 363, 429
AlwI	GGATC	1 cut(s)	639
Ama87I	CYCGRG	2 cut(s)	193, 596
AoxI	GGCC	6 cut(s)	106, 303, 307, 498, 582, 831
ApoI	RAATTY	1 cut(s)	414
ArsI	GACNNNNNNTTYG	2 cut(s)	425, 457
AsiGI	ACCGGT	1 cut(s)	474
AspLEI	GCGC	1 cut(s)	618
AspS9I	GGNCC	3 cut(s)	183, 267, 463
AsuC2I	CCSGG	1 cut(s)	275
AsuHPI	GGTGA	5 cut(s)	37, 65, 82, 613, 898
AvaI	CYCGRG	2 cut(s)	193, 596
AvaII	GGWCC	3 cut(s)	183, 267, 463
BaeGI	GKGCMC	1 cut(s)	938
BanI	GGYRCC	2 cut(s)	688, 933
BanII	GRGCYC	2 cut(s)	200, 300
Bbv12I	GWGCWC	2 cut(s)	300, 920
BbvCI	CCTCAGC	2 cut(s)	653, 732
BccI	CCATC	4 cut(s)	622, 658, 776, 868
BceAI	ACGGC	3 cut(s)	121, 451, 557
BcgI	CGANNNNNNTGC	2 cut(s)	517, 551
BcnI	CCSGG	1 cut(s)	275
BcoDI	GTCTC	3 cut(s)	88, 363, 429
BfaI	CTAG	1 cut(s)	168
BisI	GCNGC	4 cut(s)	131, 134, 338, 582
BlsI	GCNGC	4 cut(s)	132, 135, 339, 583
Bme1390I	CCNGG	1 cut(s)	275
Bme18I	GGWCC	3 cut(s)	183, 267, 463
BmeT110I	CYCGRG	2 cut(s)	193, 596
BmgBI	CACGTC	1 cut(s)	622
BmgT120I	GGNCC	3 cut(s)	183, 267, 463
BmiI	GGNNCC	4 cut(s)	184, 465, 690, 935
BmrFI	CCNGG	1 cut(s)	275
Bpu10I	CCTNAGC	2 cut(s)	653, 732
BpuMI	CCSGG	1 cut(s)	275
BsaHI	GRCGYC	2 cut(s)	140, 315
BsaI	GGTCTC	1 cut(s)	363
BsaJI	CCNNGG	1 cut(s)	695
BsaWI	WCCGGW	2 cut(s)	264, 474
BsaXI	ACNNNNNCTCC	4 cut(s)	749, 779, 821, 851
Bsc4I	CCNNNNNNNGG	3 cut(s)	410, 434, 500
Bse118I	RCCGGY	4 cut(s)	305, 383, 474, 496
Bse3DI	GCAATG	1 cut(s)	865
BseDI	CCNNGG	1 cut(s)	695
BseLI	CCNNNNNNNGG	3 cut(s)	410, 434, 500
BseMI	GCAATG	1 cut(s)	865
BseMII	CTCAG	3 cut(s)	644, 723, 930
BseRI	GAGGAG	5 cut(s)	85, 101, 692, 749, 770
BseSI	GKGCMC	1 cut(s)	938
BseX3I	CGGCCG	1 cut(s)	498
BseYI	CCCAGC	1 cut(s)	803
Bsh1236I	CGCG	2 cut(s)	411, 618
Bsh1285I	CGRYCG	1 cut(s)	501
BshFI	GGCC	6 cut(s)	108, 305, 309, 500, 584, 833
BshNI	GGYRCC	2 cut(s)	688, 933
BshTI	ACCGGT	1 cut(s)	474
BsiEI	CGRYCG	1 cut(s)	501
BsiHKAI	GWGCWC	2 cut(s)	300, 920
BsiHKCI	CYCGRG	2 cut(s)	193, 596
BsiSI	CCGG	7 cut(s)	265, 275, 306, 384, 475, 497, 501
BslI	CCNNNNNNNGG	3 cut(s)	410, 434, 500
BsmAI	GTCTC	3 cut(s)	88, 363, 429
BsmBI	CGTCTC	1 cut(s)	88
BsnI	GGCC	6 cut(s)	108, 305, 309, 500, 584, 833
Bso31I	GGTCTC	1 cut(s)	363
BsoBI	CYCGRG	2 cut(s)	193, 596
Bsp1286I	GDGCHC	4 cut(s)	200, 300, 920, 938
Bsp143I	GATC	1 cut(s)	631
BspANI	GGCC	6 cut(s)	108, 305, 309, 500, 584, 833
BspCNI	CTCAG	3 cut(s)	645, 724, 931
BspFNI	CGCG	2 cut(s)	411, 618
BspLI	GGNNCC	4 cut(s)	184, 465, 690, 935
BspPI	GGATC	1 cut(s)	639
BspQI	GCTCTTC	1 cut(s)	642
BspT107I	GGYRCC	2 cut(s)	688, 933
BspTNI	GGTCTC	1 cut(s)	363
BsrBI	CCGCTC	4 cut(s)	202, 241, 340, 581
BsrDI	GCAATG	1 cut(s)	865
BsrFI	RCCGGY	4 cut(s)	305, 383, 474, 496
BssAI	RCCGGY	4 cut(s)	305, 383, 474, 496
BssECI	CCNNGG	1 cut(s)	695
BssMI	GATC	1 cut(s)	631
BssNI	GRCGYC	2 cut(s)	140, 315
BssT1I	CCWWGG	1 cut(s)	695
Bst4CI	ACNGT	2 cut(s)	165, 922
Bst6I	CTCTTC	2 cut(s)	29, 642
BstACI	GRCGYC	2 cut(s)	140, 315
BstC8I	GCNNGC	5 cut(s)	200, 307, 494, 498, 565
BstDEI	CTNAG	4 cut(s)	68, 653, 732, 939
BstFNI	CGCG	2 cut(s)	411, 618
BstHHI	GCGC	1 cut(s)	618
BstKTI	GATC	1 cut(s)	634
BstMAI	GTCTC	3 cut(s)	88, 363, 429
BstMBI	GATC	1 cut(s)	631
BstMCI	CGRYCG	1 cut(s)	501
BstMWI	GCNNNNNNNGC	6 cut(s)	139, 204, 346, 444, 569, 578
BstSCI	CCNGG	1 cut(s)	273
BstSLI	GKGCMC	1 cut(s)	938
BstUI	CGCG	2 cut(s)	411, 618
BstZI	CGGCCG	1 cut(s)	498
BsuRI	GGCC	6 cut(s)	108, 305, 309, 500, 584, 833
BtrI	CACGTC	1 cut(s)	622
BtsIMutI	CAGTG	2 cut(s)	860, 918
Cac8I	GCNNGC	5 cut(s)	200, 307, 494, 498, 565
CfoI	GCGC	1 cut(s)	618
Cfr10I	RCCGGY	4 cut(s)	305, 383, 474, 496
Cfr13I	GGNCC	3 cut(s)	183, 267, 463
CpoI	CGGWCCG	1 cut(s)	267
CseI	GACGC	2 cut(s)	148, 323
CspAI	ACCGGT	1 cut(s)	474
CspI	CGGWCCG	1 cut(s)	267
CviAII	CATG	2 cut(s)	291, 301
DdeI	CTNAG	4 cut(s)	68, 653, 732, 939
DpnI	GATC	1 cut(s)	633
DpnII	GATC	1 cut(s)	631
EaeI	YGGCCR	3 cut(s)	303, 498, 582
EagI	CGGCCG	1 cut(s)	498
Eam1104I	CTCTTC	2 cut(s)	29, 642
EarI	CTCTTC	2 cut(s)	29, 642
EciI	GGCGGA	1 cut(s)	141
Ecl136II	GAGCTC	1 cut(s)	298
EclXI	CGGCCG	1 cut(s)	498
Eco130I	CCWWGG	1 cut(s)	695
Eco24I	GRGCYC	2 cut(s)	200, 300
Eco31I	GGTCTC	1 cut(s)	363
Eco47I	GGWCC	3 cut(s)	183, 267, 463
Eco52I	CGGCCG	1 cut(s)	498
Eco53kI	GAGCTC	1 cut(s)	298
Eco88I	CYCGRG	2 cut(s)	193, 596
EcoICRI	GAGCTC	1 cut(s)	298
EcoO109I	RGGNCCY	1 cut(s)	463
EcoT14I	CCWWGG	1 cut(s)	695
EcoT38I	GRGCYC	2 cut(s)	200, 300
ErhI	CCWWGG	1 cut(s)	695
Esp3I	CGTCTC	1 cut(s)	88
FaeI	CATG	2 cut(s)	294, 304
FaiI	YATR	6 cut(s)	292, 302, 490, 525, 587, 720
FatI	CATG	2 cut(s)	290, 300
FauI	CCCGC	3 cut(s)	207, 354, 501
Fnu4HI	GCNGC	4 cut(s)	131, 134, 338, 582
FriOI	GRGCYC	2 cut(s)	200, 300
FseI	GGCCGGCC	1 cut(s)	309
Fsp4HI	GCNGC	4 cut(s)	131, 134, 338, 582
FspBI	CTAG	1 cut(s)	168
GlaI	GCGC	1 cut(s)	617
GluI	GCNGC	4 cut(s)	131, 134, 338, 582
GsaI	CCCAGC	1 cut(s)	807
HaeIII	GGCC	6 cut(s)	108, 305, 309, 500, 584, 833
HapII	CCGG	7 cut(s)	265, 275, 306, 384, 475, 497, 501
HgaI	GACGC	2 cut(s)	148, 323
HhaI	GCGC	1 cut(s)	618
Hin1I	GRCGYC	2 cut(s)	140, 315
Hin1II	CATG	2 cut(s)	294, 304
Hin6I	GCGC	1 cut(s)	616
HinP1I	GCGC	1 cut(s)	616
HinfI	GANTC	3 cut(s)	330, 594, 775
HpaII	CCGG	7 cut(s)	265, 275, 306, 384, 475, 497, 501
HphI	GGTGA	5 cut(s)	37, 65, 82, 613, 898
Hpy166II	GTNNAC	1 cut(s)	45
Hpy188I	TCNGA	8 cut(s)	229, 250, 271, 329, 429, 549, 644, 906
Hpy188III	TCNNGA	5 cut(s)	119, 168, 193, 481, 779
Hpy8I	GTNNAC	1 cut(s)	45
Hpy99I	CGWCG	7 cut(s)	38, 41, 317, 437, 532, 535, 623
HpyAV	CCTTC	4 cut(s)	367, 584, 703, 883
HpyCH4III	ACNGT	2 cut(s)	165, 922
HpyCH4IV	ACGT	2 cut(s)	533, 621
HpyCH4V	TGCA	2 cut(s)	567, 858
HpyF10VI	GCNNNNNNNGC	6 cut(s)	139, 204, 346, 444, 569, 578
HpyF3I	CTNAG	4 cut(s)	68, 653, 732, 939
HpySE526I	ACGT	2 cut(s)	533, 621
Hsp92I	GRCGYC	2 cut(s)	140, 315
Hsp92II	CATG	2 cut(s)	294, 304
HspAI	GCGC	1 cut(s)	616
KroI	GCCGGC	2 cut(s)	305, 496
KroNI	GCCGGC	2 cut(s)	307, 498
Kzo9I	GATC	1 cut(s)	631
LguI	GCTCTTC	1 cut(s)	642
LmnI	GCTCC	4 cut(s)	246, 295, 345, 915
MaeI	CTAG	1 cut(s)	168
MaeII	ACGT	2 cut(s)	533, 621
MaeIII	GTNAC	1 cut(s)	71
MalI	GATC	1 cut(s)	633
MbiI	CCGCTC	4 cut(s)	202, 241, 340, 581
MboI	GATC	1 cut(s)	631
MboII	GAAGA	7 cut(s)	6, 16, 463, 496, 659, 757, 905
MhlI	GDGCHC	4 cut(s)	200, 300, 920, 938
MluCI	AATT	3 cut(s)	414, 896, 972
MlyI	GAGTC	1 cut(s)	588
MmeI	TCCRAC	2 cut(s)	294, 423
MroNI	GCCGGC	2 cut(s)	305, 496
MslI	CAYNNNNRTG	1 cut(s)	923
MspI	CCGG	7 cut(s)	265, 275, 306, 384, 475, 497, 501
MspR9I	CCNGG	1 cut(s)	275
MvnI	CGCG	2 cut(s)	411, 618
MwoI	GCNNNNNNNGC	6 cut(s)	139, 204, 346, 444, 569, 578
NaeI	GCCGGC	2 cut(s)	307, 498
NciI	CCSGG	1 cut(s)	275
NdeII	GATC	1 cut(s)	631
NgoMIV	GCCGGC	2 cut(s)	305, 496
NlaIII	CATG	2 cut(s)	294, 304
NlaIV	GGNNCC	4 cut(s)	184, 465, 690, 935
NmeAIII	GCCGAG	1 cut(s)	41
NmuCI	GTSAC	1 cut(s)	71
OliI	CACNNNNGTG	1 cut(s)	923
PciSI	GCTCTTC	1 cut(s)	642
PcsI	WCGNNNNNNNCGW	1 cut(s)	618
PdiI	GCCGGC	2 cut(s)	307, 498
PfeI	GAWTC	2 cut(s)	330, 775
PinAI	ACCGGT	1 cut(s)	474
PkrI	GCNGC	4 cut(s)	132, 135, 339, 583
PleI	GAGTC	1 cut(s)	588
PpsI	GAGTC	1 cut(s)	588
PpuMI	RGGWCCY	1 cut(s)	463
Psp124BI	GAGCTC	1 cut(s)	300
Psp5II	RGGWCCY	1 cut(s)	463
PspFI	CCCAGC	1 cut(s)	803
PspN4I	GGNNCC	4 cut(s)	184, 465, 690, 935
PspPI	GGNCC	3 cut(s)	183, 267, 463
PspPPI	RGGWCCY	1 cut(s)	463
RigI	GGCCGGCC	1 cut(s)	309
RseI	CAYNNNNRTG	1 cut(s)	923
Rsr2I	CGGWCCG	1 cut(s)	267
RsrII	CGGWCCG	1 cut(s)	267
SacI	GAGCTC	1 cut(s)	300
SapI	GCTCTTC	1 cut(s)	642
SatI	GCNGC	4 cut(s)	131, 134, 338, 582
Sau3AI	GATC	1 cut(s)	631
Sau96I	GGNCC	3 cut(s)	183, 267, 463
SchI	GAGTC	1 cut(s)	588
ScrFI	CCNGG	1 cut(s)	275
SduI	GDGCHC	4 cut(s)	200, 300, 920, 938
SinI	GGWCC	3 cut(s)	183, 267, 463
SmiMI	CAYNNNNRTG	1 cut(s)	923
Sse9I	AATT	3 cut(s)	414, 896, 972
SspMI	CTAG	1 cut(s)	168
SstI	GAGCTC	1 cut(s)	300
StyD4I	CCNGG	1 cut(s)	273
StyI	CCWWGG	1 cut(s)	695
TaaI	ACNGT	2 cut(s)	165, 922
TaiI	ACGT	2 cut(s)	536, 624
TaqI	TCGA	7 cut(s)	120, 312, 480, 558, 577, 612, 626
TasI	AATT	3 cut(s)	414, 896, 972
TauI	GCSGC	4 cut(s)	133, 136, 340, 584
TfiI	GAWTC	2 cut(s)	330, 775
TscAI	CASTG	2 cut(s)	860, 925
TseFI	GTSAC	1 cut(s)	71
Tsp45I	GTSAC	1 cut(s)	71
TspGWI	ACGGA	1 cut(s)	233
TspRI	CASTG	2 cut(s)	860, 925
VpaK11BI	GGWCC	3 cut(s)	183, 267, 463
XapI	RAATTY	1 cut(s)	414
XbaI	TCTAGA	1 cut(s)	167
XspI	CTAG	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.