Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004266

Physical Location & Seq

Genomic Coordinates Reverse (-)

11964776 .. 11966320

Gene Structure 1545 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G33030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGAAGAACAAAACCTCTCCTCGTACGCAATGATCTTATCAAGCTCTTCTGTTCTTCCCATGGTTCTTAAGACAGCCATTGATCTTGGTCTCTTTGACATATTAGCTGAATCTGGTCCTTCCTCTGCTTCTCAGATCTTTTCTTTGTTGTCTAATGAGACAAAGAAACATCATGATTCAAGCTTGGTCAATCGGATTCTGAGATTTCTTGCGAGTTACTCTATACTCACATGCTCTGTTTCTACTGAACACGGTGAGCCATTTGCAATCTATGGCTTAGCTCCTGTTGCCAAGTACTTCACCAAGAACCAAAATGGAGGTGGATCGTTGGCTCCGATGGTGAATCTGTTTCAGGACAAGGTCGTGACTGATATGTGGTACAACCTTAAAGATTCTGTTCTTGAAGGAGGGCTTCCATTCAACAACACTCACGGTTCAAGCGCGGTTGAACTGGTAGGCAGTGATTCAAGATTCAGAGAAGTGTTCCAAAGCTCCATGAAAGGTTTCAATGAAGTATTCATAGAAGAATTTCTAAAGAACTACAATGGTTTTGATGGTGTGAAGTCTTTGGTTGATGTTGGTGGTGGAGATGGCTCTCTTCTCAGTAGAATCATCTCTAAGCATACTCACATTATCAAAGCTATTAACTTTGATTTGCCCACTGTTATCAACACTTCATTACCTTCTCCAGGAATTGAGCATGTTGCTGGAGATATGTTTACAAACACTCCTAAAGGAGAAGCTATTTTCATGAAGTGGATGCTCCATAGCTGGGACGATGACCATTGCGTGAAGATACTTTCCAACTGTTATCAGTCGTTACCGTCAAATGGGAAGGTGATTGTAGTCGATATGGTAATCCCAGAGTTCCCAGGAGACACTCTCTTAGACAGAAGCTTGTTTCAGTTTGAGTTGTTCATGATGAACATGAACCCATCAGGGAAAGAACGAACAAAGAAAGAATTCGAGATCTTAGCTCGTCTCGCCGGATTCTCTAATGTCCAAGTTCCATTCACATCTCTCTGTTTCTCAGTTCTTGAGTTCCACAAGAACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

352

Amino Acids

38.97

Weight (kDa)

5.58

Isoelectric Point (pI)

38.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	13 - 102	2.4e-16	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	126 - 332	4.1e-51	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33030 AT1G33030 AT1G33030
fragaria_vesca	FvH4_5g10440
malus_domestica	MD14G1140100.v1.1 MD14G1140300.v1.1 MD14G1140600.v1.1 MD14G1140900.v1.1
prunus_persica	Prupe.5G134400_v2.0.a1 Prupe.5G134400_v2.0.a1
pyrus_communis	pycom14g11580
rosa_chinensis	RchiOBHm_Chr7g0187771 RchiOBHm_Chr7g0187791
rosa_laevigata	RLG00000004756 RLG00000004757
rosa_multiflora	Rmu_sc0004483.1_g000030 Rmu_sc0004483.1_g000036
rosa_roxburghii	Rroxscaffold_3G00267080 Rroxscaffold_3G00267090
rosa_rugosa	Rorug06G0484100.1 Rorug06G0484200
rosa_samantha	Rh7AG089200 Rh7AG089400 Rh7BG091000 Rh7BG091100 Rh7CG090000 Rh7CG090100 Rh7CG090200 Rh7DG091600 Rh7DG091800
rosa_wichuraiana	Rw7G007700 Rw7G007710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	443
AciI	CCGC	1 cut(s)	443
AclWI	GGATC	1 cut(s)	331
AcsI	RAATTY	2 cut(s)	527, 962
AfaI	GTAC	3 cut(s)	26, 296, 380
AfiI	CCNNNNNNNGG	3 cut(s)	689, 772, 830
AflII	CTTAAG	1 cut(s)	68
AgsI	TTSAA	7 cut(s)	180, 404, 421, 438, 449, 468, 508
AjnI	CCWGG	2 cut(s)	688, 871
Alw26I	GTCTC	4 cut(s)	95, 152, 870, 986
AlwI	GGATC	1 cut(s)	331
ApoI	RAATTY	2 cut(s)	527, 962
Asp700I	GAANNNNTTC	3 cut(s)	503, 528, 962
AspLEI	GCGC	1 cut(s)	443
AspS9I	GGNCC	1 cut(s)	116
AsuHPI	GGTGA	4 cut(s)	266, 292, 352, 850
AvaII	GGWCC	1 cut(s)	116
BccI	CCATC	4 cut(s)	331, 548, 584, 943
BciT130I	CCWGG	2 cut(s)	690, 873
BcoDI	GTCTC	4 cut(s)	95, 152, 870, 986
BfrI	CTTAAG	1 cut(s)	68
BglII	AGATCT	2 cut(s)	135, 969
BlpI	GCTNAGC	1 cut(s)	277
BmcAI	AGTACT	1 cut(s)	296
Bme1390I	CCNGG	2 cut(s)	690, 873
Bme18I	GGWCC	1 cut(s)	116
BmgT120I	GGNCC	1 cut(s)	116
BmiI	GGNNCC	1 cut(s)	333
BmrFI	CCNGG	2 cut(s)	690, 873
BmsI	GCATC	1 cut(s)	750
BplI	GAGNNNNNCTC	2 cut(s)	867, 899
BpmI	CTGGAG	2 cut(s)	672, 729
Bpu1102I	GCTNAGC	1 cut(s)	277
BpuEI	CTTGAG	1 cut(s)	1058
BsaI	GGTCTC	1 cut(s)	95
BsaJI	CCNNGG	2 cut(s)	60, 871
BsaXI	ACNNNNNCTCC	2 cut(s)	712, 742
Bsc4I	CCNNNNNNNGG	3 cut(s)	689, 772, 830
Bse1I	ACTGG	1 cut(s)	456
Bse3DI	GCAATG	2 cut(s)	36, 784
BseBI	CCWGG	2 cut(s)	690, 873
BseDI	CCNNGG	2 cut(s)	60, 871
BseGI	GGATG	1 cut(s)	765
BseLI	CCNNNNNNNGG	3 cut(s)	689, 772, 830
BseMI	GCAATG	2 cut(s)	36, 784
BseMII	CTCAG	4 cut(s)	146, 191, 616, 1044
BseNI	ACTGG	1 cut(s)	456
BseRI	GAGGAG	1 cut(s)	10
BseYI	CCCAGC	1 cut(s)	771
Bsh1236I	CGCG	1 cut(s)	443
BsiSI	CCGG	1 cut(s)	987
BsiWI	CGTACG	1 cut(s)	24
BslFI	GGGAC	1 cut(s)	788
BslI	CCNNNNNNNGG	3 cut(s)	689, 772, 830
BsmAI	GTCTC	4 cut(s)	95, 152, 870, 986
BsmBI	CGTCTC	1 cut(s)	986
BsmFI	GGGAC	1 cut(s)	788
Bso31I	GGTCTC	1 cut(s)	95
Bsp143I	GATC	5 cut(s)	33, 82, 135, 323, 969
Bsp1720I	GCTNAGC	1 cut(s)	277
Bsp19I	CCATGG	1 cut(s)	60
BspACI	CCGC	1 cut(s)	443
BspCNI	CTCAG	4 cut(s)	145, 192, 615, 1043
BspFNI	CGCG	1 cut(s)	443
BspHI	TCATGA	3 cut(s)	172, 750, 918
BspLI	GGNNCC	1 cut(s)	333
BspPI	GGATC	1 cut(s)	331
BspQI	GCTCTTC	1 cut(s)	52
BspTI	CTTAAG	1 cut(s)	68
BspTNI	GGTCTC	1 cut(s)	95
BsrDI	GCAATG	2 cut(s)	36, 784
BsrI	ACTGG	1 cut(s)	456
BssECI	CCNNGG	2 cut(s)	60, 871
BssMI	GATC	5 cut(s)	33, 82, 135, 323, 969
BssT1I	CCWWGG	1 cut(s)	60
Bst2UI	CCWGG	2 cut(s)	690, 873
Bst4CI	ACNGT	5 cut(s)	254, 434, 664, 809, 825
Bst6I	CTCTTC	2 cut(s)	52, 603
BstAFI	CTTAAG	1 cut(s)	68
BstDEI	CTNAG	8 cut(s)	132, 200, 277, 602, 618, 886, 973, 1030
BstDSI	CCRYGG	1 cut(s)	60
BstENI	CCTNNNNNAGG	1 cut(s)	687
BstF5I	GGATG	1 cut(s)	765
BstFNI	CGCG	1 cut(s)	443
BstHHI	GCGC	1 cut(s)	443
BstKTI	GATC	5 cut(s)	36, 85, 138, 326, 972
BstMAI	GTCTC	4 cut(s)	95, 152, 870, 986
BstMBI	GATC	5 cut(s)	33, 82, 135, 323, 969
BstMWI	GCNNNNNNNGC	2 cut(s)	287, 983
BstNI	CCWGG	2 cut(s)	690, 873
BstNSI	RCATGY	2 cut(s)	234, 704
BstSCI	CCNGG	2 cut(s)	688, 871
BstUI	CGCG	1 cut(s)	443
BstX2I	RGATCY	2 cut(s)	135, 969
BstYI	RGATCY	2 cut(s)	135, 969
BtgI	CCRYGG	1 cut(s)	60
BtsCI	GGATG	1 cut(s)	765
BtsI	GCAGTG	1 cut(s)	466
BtsIMutI	CAGTG	2 cut(s)	466, 660
CciI	TCATGA	3 cut(s)	172, 750, 918
CfoI	GCGC	1 cut(s)	443
Cfr13I	GGNCC	1 cut(s)	116
Csp6I	GTAC	3 cut(s)	25, 295, 379
CviAII	CATG	8 cut(s)	61, 173, 231, 496, 701, 751, 919, 928
CviQI	GTAC	3 cut(s)	25, 295, 379
DdeI	CTNAG	8 cut(s)	132, 200, 277, 602, 618, 886, 973, 1030
DpnI	GATC	5 cut(s)	35, 84, 137, 325, 971
DpnII	GATC	5 cut(s)	33, 82, 135, 323, 969
Eam1104I	CTCTTC	2 cut(s)	52, 603
EarI	CTCTTC	2 cut(s)	52, 603
Eco130I	CCWWGG	1 cut(s)	60
Eco31I	GGTCTC	1 cut(s)	95
Eco47I	GGWCC	1 cut(s)	116
EcoNI	CCTNNNNNAGG	1 cut(s)	687
EcoRI	GAATTC	1 cut(s)	962
EcoRII	CCWGG	2 cut(s)	688, 871
EcoT14I	CCWWGG	1 cut(s)	60
ErhI	CCWWGG	1 cut(s)	60
Esp3I	CGTCTC	1 cut(s)	986
FaeI	CATG	8 cut(s)	64, 176, 234, 499, 704, 754, 922, 931
FalI	AAGNNNNNCTT	2 cut(s)	396, 428
FaqI	GGGAC	1 cut(s)	788
FatI	CATG	8 cut(s)	60, 172, 230, 495, 700, 750, 918, 927
FokI	GGATG	1 cut(s)	772
GlaI	GCGC	1 cut(s)	442
GsaI	CCCAGC	1 cut(s)	775
GsuI	CTGGAG	2 cut(s)	672, 729
HapII	CCGG	1 cut(s)	987
HhaI	GCGC	1 cut(s)	443
Hin1II	CATG	8 cut(s)	64, 176, 234, 499, 704, 754, 922, 931
Hin6I	GCGC	1 cut(s)	441
HinP1I	GCGC	1 cut(s)	441
HindIII	AAGCTT	2 cut(s)	181, 895
HinfI	GANTC	9 cut(s)	110, 176, 196, 343, 392, 464, 471, 609, 990
HpaII	CCGG	1 cut(s)	987
HphI	GGTGA	4 cut(s)	266, 292, 352, 850
Hpy166II	GTNNAC	1 cut(s)	720
Hpy188I	TCNGA	5 cut(s)	135, 195, 201, 336, 476
Hpy188III	TCNNGA	9 cut(s)	173, 353, 364, 401, 468, 751, 919, 967, 1037
Hpy8I	GTNNAC	1 cut(s)	720
HpyAV	CCTTC	4 cut(s)	129, 398, 693, 829
HpyCH4III	ACNGT	5 cut(s)	254, 434, 664, 809, 825
HpyCH4V	TGCA	1 cut(s)	266
HpyF10VI	GCNNNNNNNGC	2 cut(s)	287, 983
HpyF3I	CTNAG	8 cut(s)	132, 200, 277, 602, 618, 886, 973, 1030
Hsp92II	CATG	8 cut(s)	64, 176, 234, 499, 704, 754, 922, 931
HspAI	GCGC	1 cut(s)	441
Kzo9I	GATC	5 cut(s)	33, 82, 135, 323, 969
LguI	GCTCTTC	1 cut(s)	52
LmnI	GCTCC	4 cut(s)	286, 337, 497, 768
LweI	GCATC	1 cut(s)	750
MaeIII	GTNAC	3 cut(s)	215, 364, 819
MalI	GATC	5 cut(s)	35, 84, 137, 325, 971
MboI	GATC	5 cut(s)	33, 82, 135, 323, 969
MboII	GAAGA	6 cut(s)	17, 39, 47, 536, 590, 805
MflI	RGATCY	2 cut(s)	135, 969
MluCI	AATT	3 cut(s)	527, 693, 962
MmeI	TCCRAC	1 cut(s)	828
MnlI	CCTC	5 cut(s)	26, 31, 133, 311, 401
MroXI	GAANNNNTTC	3 cut(s)	503, 528, 962
MseI	TTAA	3 cut(s)	69, 387, 645
MspCI	CTTAAG	1 cut(s)	68
MspI	CCGG	1 cut(s)	987
MspR9I	CCNGG	2 cut(s)	690, 873
MvaI	CCWGG	2 cut(s)	690, 873
MvnI	CGCG	1 cut(s)	443
MwoI	GCNNNNNNNGC	2 cut(s)	287, 983
NcoI	CCATGG	1 cut(s)	60
NdeII	GATC	5 cut(s)	33, 82, 135, 323, 969
NlaIII	CATG	8 cut(s)	64, 176, 234, 499, 704, 754, 922, 931
NlaIV	GGNNCC	1 cut(s)	333
NmuCI	GTSAC	1 cut(s)	364
NspI	RCATGY	2 cut(s)	234, 704
PagI	TCATGA	3 cut(s)	172, 750, 918
PciSI	GCTCTTC	1 cut(s)	52
PcsI	WCGNNNNNNNCGW	1 cut(s)	332
PdmI	GAANNNNTTC	3 cut(s)	503, 528, 962
PfeI	GAWTC	9 cut(s)	110, 176, 196, 343, 392, 464, 471, 609, 990
Pfl23II	CGTACG	1 cut(s)	24
PflFI	GACNNNGTC	1 cut(s)	359
PfoI	TCCNGGA	1 cut(s)	688
Psp6I	CCWGG	2 cut(s)	688, 871
PspFI	CCCAGC	1 cut(s)	771
PspGI	CCWGG	2 cut(s)	688, 871
PspLI	CGTACG	1 cut(s)	24
PspN4I	GGNNCC	1 cut(s)	333
PspPI	GGNCC	1 cut(s)	116
PsuI	RGATCY	2 cut(s)	135, 969
PsyI	GACNNNGTC	1 cut(s)	359
RsaI	GTAC	3 cut(s)	26, 296, 380
RsaNI	GTAC	3 cut(s)	25, 295, 379
SapI	GCTCTTC	1 cut(s)	52
SaqAI	TTAA	3 cut(s)	69, 387, 645
Sau3AI	GATC	5 cut(s)	33, 82, 135, 323, 969
Sau96I	GGNCC	1 cut(s)	116
ScaI	AGTACT	1 cut(s)	296
ScrFI	CCNGG	2 cut(s)	690, 873
SfaNI	GCATC	1 cut(s)	750
SinI	GGWCC	1 cut(s)	116
SmlI	CTYRAG	2 cut(s)	68, 1037
SmoI	CTYRAG	2 cut(s)	68, 1037
Sse9I	AATT	3 cut(s)	527, 693, 962
SsiI	CCGC	1 cut(s)	443
StyD4I	CCNGG	2 cut(s)	688, 871
StyI	CCWWGG	1 cut(s)	60
TaaI	ACNGT	5 cut(s)	254, 434, 664, 809, 825
TaqI	TCGA	2 cut(s)	849, 966
TasI	AATT	3 cut(s)	527, 693, 962
TatI	WGTACW	1 cut(s)	294
TfiI	GAWTC	9 cut(s)	110, 176, 196, 343, 392, 464, 471, 609, 990
Tru1I	TTAA	3 cut(s)	69, 387, 645
Tru9I	TTAA	3 cut(s)	69, 387, 645
TscAI	CASTG	2 cut(s)	466, 667
TseFI	GTSAC	1 cut(s)	364
Tsp45I	GTSAC	1 cut(s)	364
TspDTI	ATGAA	9 cut(s)	508, 512, 525, 666, 739, 767, 907, 938, 944
TspRI	CASTG	2 cut(s)	466, 667
Tth111I	GACNNNGTC	1 cut(s)	359
Vha464I	CTTAAG	1 cut(s)	68
VpaK11BI	GGWCC	1 cut(s)	116
XagI	CCTNNNNNAGG	1 cut(s)	687
XapI	RAATTY	2 cut(s)	527, 962
XceI	RCATGY	2 cut(s)	234, 704
XcmI	CCANNNNNNNNNTGG	1 cut(s)	317
XmnI	GAANNNNTTC	3 cut(s)	503, 528, 962
ZrmI	AGTACT	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.