Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0004266

Physical Location & Seq

Genomic Coordinates Forward (+)

5948904 .. 5950365

Gene Structure 1462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g10440.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGAAAGTCACTCCCAATATGCCATGCAGCTAGTAAGTGCATCACTAGCACCTATGGTGCTTAAAGCGGCCATAGAACTTGGTGTGCTCGAGATAATACACAGAGCTGGCCCTGGAGCTCAGCTATCACCTTCCGAAATAGCGTCACAGCTCCACTCCAACAACAACCCGGATGCGCCTGCAGTGCTTGATCGTATGCTTCGCCTTCTGTCTGCTCACTCCATTCTCACGTGTTCAGTTTCCACTGATGAACTTGATCATGTGAAGGTTCTGAGGCTTTATGGTTTGGCACCGGTTGGCAAGTACTTCATTCGGGACGAGGATGGAGGATCATTAGCAACTATACTGAATTTTTGCCATGACAAGGTCAACACAGATAGCTGGTACCATTTGACAGATGCAGTTCTGGAAGGAGGACTTCCATTTTCCAAGGCCTATGGAATGAGTGCGGTGGAGTACAATGCAAAAGATGCTAGATATGGTGAAATATTCAGAAACTCAATGAAAGAGTTTAACGCTGTGTTAATGAAGGAAATCCTCGAGAGTTACAAGGGTTTTGAAGGTCTAAGAACACTCGTAGATGCGGGTGGTGGCGATGGTACTATCCTGAACATGATCATCTCCAAGTACCCTACCGTCAAGGGTATCAACTATGATATGGCTCCTGTTATAGAAAAATCTCCCTCCTATCCTGGTATTGAGCAGATTGCAGGTGATATCTTTGAAAACATTCCAAAAGGAGATGCCATTTTCATGAAGTGGATGCTACACCAGTATGATGACAAACGTTGCTTGACAATACTAAAGAACTGCTACGAGGCATTGCCAAACCATGGAAAAGTCATAGTGGTTGATATGGTGATACCGGAAGCCCCCGAAACTACTACTTCTGCAAAAAGCTTGTTTCAGTTTGATATGTTCATGATGAACATGAACACCACTGGAAATGAGAGGACAGAGAAAGAACTTGGAAGTTTGGGAAAACAAGCCGGGTTTAACACCATTCAAGTGGCATGTTCTGCGTTTAACTTTTCGGTGGTGGAGCTGTTCAAGAACATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

354

Amino Acids

38.94

Weight (kDa)

5.33

Isoelectric Point (pI)

36.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	9 - 105	1.3e-16	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	128 - 333	1.5e-59	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33030 AT1G33030 AT1G33030
fragaria_vesca	FvH4_5g10440
malus_domestica	MD14G1140100.v1.1 MD14G1140300.v1.1 MD14G1140600.v1.1 MD14G1140900.v1.1
prunus_persica	Prupe.5G134400_v2.0.a1 Prupe.5G134400_v2.0.a1
pyrus_communis	pycom14g11580
rosa_chinensis	RchiOBHm_Chr7g0187771 RchiOBHm_Chr7g0187791
rosa_laevigata	RLG00000004756 RLG00000004757
rosa_multiflora	Rmu_sc0004483.1_g000030 Rmu_sc0004483.1_g000036
rosa_roxburghii	Rroxscaffold_3G00267080 Rroxscaffold_3G00267090
rosa_rugosa	Rorug06G0484100.1 Rorug06G0484200
rosa_samantha	Rh7AG089200 Rh7AG089400 Rh7BG091000 Rh7BG091100 Rh7CG090000 Rh7CG090100 Rh7CG090200 Rh7DG091600 Rh7DG091800
rosa_wichuraiana	Rw7G007700 Rw7G007710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	701
Acc36I	ACCTGC	1 cut(s)	701
Acc65I	GGTACC	1 cut(s)	384
AccB1I	GGYRCC	2 cut(s)	289, 384
AccB7I	CCANNNNNTGG	1 cut(s)	833
AciI	CCGC	3 cut(s)	68, 449, 584
AclI	AACGTT	1 cut(s)	787
AclWI	GGATC	1 cut(s)	337
AcoI	YGGCCR	1 cut(s)	69
AcsI	RAATTY	1 cut(s)	349
AcvI	CACGTG	1 cut(s)	231
AfaI	GTAC	5 cut(s)	305, 386, 458, 601, 629
AfiI	CCNNNNNNNGG	2 cut(s)	364, 833
AflIII	ACRYGT	2 cut(s)	230, 1056
AgeI	ACCGGT	1 cut(s)	292
AgsI	TTSAA	4 cut(s)	560, 725, 1007, 1051
AjnI	CCWGG	2 cut(s)	112, 691
AluBI	AGCT	8 cut(s)	31, 107, 119, 124, 151, 381, 900, 1045
AluI	AGCT	8 cut(s)	31, 107, 119, 124, 151, 381, 900, 1045
Alw21I	GWGCWC	2 cut(s)	90, 121
AlwI	GGATC	1 cut(s)	337
Ama87I	CYCGRG	2 cut(s)	89, 539
AoxI	GGCC	3 cut(s)	69, 109, 432
ApeKI	GCWGC	1 cut(s)	28
ApoI	RAATTY	1 cut(s)	349
AsiGI	ACCGGT	1 cut(s)	292
Asp700I	GAANNNNTTC	1 cut(s)	729
Asp718I	GGTACC	1 cut(s)	384
AspLEI	GCGC	1 cut(s)	178
AspS9I	GGNCC	1 cut(s)	110
AsuC2I	CCSGG	2 cut(s)	170, 991
AsuHPI	GGTGA	4 cut(s)	120, 494, 725, 871
AvaI	CYCGRG	2 cut(s)	89, 539
BanI	GGYRCC	2 cut(s)	289, 384
BanII	GRGCYC	1 cut(s)	121
BbrPI	CACGTG	1 cut(s)	231
Bbv12I	GWGCWC	2 cut(s)	90, 121
BbvI	GCAGC	1 cut(s)	40
BccI	CCATC	2 cut(s)	317, 590
BciT130I	CCWGG	2 cut(s)	114, 693
BclI	TGATCA	2 cut(s)	256, 615
BcnI	CCSGG	2 cut(s)	170, 991
BfaI	CTAG	3 cut(s)	32, 47, 474
BfmI	CTRYAG	1 cut(s)	180
BfuAI	ACCTGC	1 cut(s)	701
BisI	GCNGC	2 cut(s)	29, 69
BlpI	GCTNAGC	1 cut(s)	120
BlsI	GCNGC	2 cut(s)	30, 70
BmcAI	AGTACT	1 cut(s)	305
Bme1390I	CCNGG	4 cut(s)	114, 170, 693, 991
BmeT110I	CYCGRG	2 cut(s)	89, 539
BmgT120I	GGNCC	1 cut(s)	110
BmiI	GGNNCC	3 cut(s)	291, 386, 663
BmrFI	CCNGG	4 cut(s)	114, 170, 693, 991
BmsI	GCATC	7 cut(s)	50, 163, 388, 460, 571, 733, 753
BpmI	CTGGAG	1 cut(s)	135
Bpu1102I	GCTNAGC	1 cut(s)	120
BpuMI	CCSGG	2 cut(s)	170, 991
BsaAI	YACGTR	1 cut(s)	231
BsaJI	CCNNGG	3 cut(s)	112, 429, 832
BsaWI	WCCGGW	2 cut(s)	292, 865
Bsc4I	CCNNNNNNNGG	2 cut(s)	364, 833
Bse118I	RCCGGY	1 cut(s)	292
Bse1I	ACTGG	2 cut(s)	772, 946
Bse3DI	GCAATG	1 cut(s)	821
BseBI	CCWGG	2 cut(s)	114, 693
BseDI	CCNNGG	3 cut(s)	112, 429, 832
BseGI	GGATG	3 cut(s)	178, 328, 768
BseLI	CCNNNNNNNGG	2 cut(s)	364, 833
BseMI	GCAATG	1 cut(s)	821
BseMII	CTCAG	2 cut(s)	134, 263
BseNI	ACTGG	2 cut(s)	772, 946
BseXI	GCAGC	1 cut(s)	40
BshFI	GGCC	3 cut(s)	71, 111, 434
BshNI	GGYRCC	2 cut(s)	289, 384
BshTI	ACCGGT	1 cut(s)	292
BsiHKAI	GWGCWC	2 cut(s)	90, 121
BsiHKCI	CYCGRG	2 cut(s)	89, 539
BsiSI	CCGG	4 cut(s)	170, 293, 866, 990
BslFI	GGGAC	1 cut(s)	329
BslI	CCNNNNNNNGG	2 cut(s)	364, 833
BsmFI	GGGAC	1 cut(s)	329
BsnI	GGCC	3 cut(s)	71, 111, 434
BsoBI	CYCGRG	2 cut(s)	89, 539
Bsp1286I	GDGCHC	2 cut(s)	90, 121
Bsp143I	GATC	4 cut(s)	190, 256, 329, 615
Bsp1720I	GCTNAGC	1 cut(s)	120
Bsp19I	CCATGG	1 cut(s)	832
BspACI	CCGC	3 cut(s)	68, 449, 584
BspANI	GGCC	3 cut(s)	71, 111, 434
BspCNI	CTCAG	2 cut(s)	133, 264
BspHI	TCATGA	2 cut(s)	753, 921
BspLI	GGNNCC	3 cut(s)	291, 386, 663
BspMAI	CTGCAG	1 cut(s)	184
BspMI	ACCTGC	1 cut(s)	701
BspPI	GGATC	1 cut(s)	337
BspT107I	GGYRCC	2 cut(s)	289, 384
BsrDI	GCAATG	1 cut(s)	821
BsrFI	RCCGGY	1 cut(s)	292
BsrI	ACTGG	2 cut(s)	772, 946
BssAI	RCCGGY	1 cut(s)	292
BssECI	CCNNGG	3 cut(s)	112, 429, 832
BssMI	GATC	4 cut(s)	190, 256, 329, 615
BssT1I	CCWWGG	2 cut(s)	429, 832
Bst2UI	CCWGG	2 cut(s)	114, 693
Bst4CI	ACNGT	1 cut(s)	637
BstAPI	GCANNNNNTGC	2 cut(s)	470, 1019
BstBAI	YACGTR	1 cut(s)	231
BstC8I	GCNNGC	2 cut(s)	109, 180
BstDEI	CTNAG	3 cut(s)	120, 272, 566
BstDSI	CCRYGG	1 cut(s)	832
BstF5I	GGATG	3 cut(s)	178, 328, 768
BstHHI	GCGC	1 cut(s)	178
BstKTI	GATC	4 cut(s)	193, 259, 332, 618
BstMBI	GATC	4 cut(s)	190, 256, 329, 615
BstMWI	GCNNNNNNNGC	4 cut(s)	47, 184, 470, 1019
BstNI	CCWGG	2 cut(s)	114, 693
BstNSI	RCATGY	2 cut(s)	1017, 1060
BstSCI	CCNGG	4 cut(s)	112, 168, 691, 989
BstSFI	CTRYAG	1 cut(s)	180
BstV1I	GCAGC	1 cut(s)	40
BstXI	CCANNNNNNTGG	1 cut(s)	1009
BsuRI	GGCC	3 cut(s)	71, 111, 434
BtgI	CCRYGG	1 cut(s)	832
BtgZI	GCGATG	1 cut(s)	609
BtsCI	GGATG	3 cut(s)	178, 328, 768
BtsI	GCAGTG	1 cut(s)	189
BtsIMutI	CAGTG	3 cut(s)	189, 243, 939
BveI	ACCTGC	1 cut(s)	701
Cac8I	GCNNGC	2 cut(s)	109, 180
CciI	TCATGA	2 cut(s)	753, 921
CfoI	GCGC	1 cut(s)	178
Cfr10I	RCCGGY	1 cut(s)	292
Cfr13I	GGNCC	1 cut(s)	110
CseI	GACGC	1 cut(s)	132
Csp6I	GTAC	5 cut(s)	304, 385, 457, 600, 628
CspAI	ACCGGT	1 cut(s)	292
CviQI	GTAC	5 cut(s)	304, 385, 457, 600, 628
DdeI	CTNAG	3 cut(s)	120, 272, 566
DpnI	GATC	4 cut(s)	192, 258, 331, 617
DpnII	GATC	4 cut(s)	190, 256, 329, 615
EaeI	YGGCCR	1 cut(s)	69
Ecl136II	GAGCTC	1 cut(s)	119
Eco130I	CCWWGG	2 cut(s)	429, 832
Eco147I	AGGCCT	1 cut(s)	434
Eco24I	GRGCYC	1 cut(s)	121
Eco32I	GATATC	1 cut(s)	718
Eco53kI	GAGCTC	1 cut(s)	119
Eco72I	CACGTG	1 cut(s)	231
Eco88I	CYCGRG	2 cut(s)	89, 539
EcoICRI	GAGCTC	1 cut(s)	119
EcoRII	CCWGG	2 cut(s)	112, 691
EcoRV	GATATC	1 cut(s)	718
EcoT14I	CCWWGG	2 cut(s)	429, 832
EcoT38I	GRGCYC	1 cut(s)	121
ErhI	CCWWGG	2 cut(s)	429, 832
FalI	AAGNNNNNCTT	2 cut(s)	402, 434
FaqI	GGGAC	1 cut(s)	329
FauI	CCCGC	1 cut(s)	577
FbaI	TGATCA	2 cut(s)	256, 615
Fnu4HI	GCNGC	2 cut(s)	29, 69
FokI	GGATG	3 cut(s)	185, 335, 775
FriOI	GRGCYC	1 cut(s)	121
Fsp4HI	GCNGC	2 cut(s)	29, 69
FspBI	CTAG	3 cut(s)	32, 47, 474
GlaI	GCGC	1 cut(s)	177
GluI	GCNGC	2 cut(s)	29, 69
GsuI	CTGGAG	1 cut(s)	135
HaeIII	GGCC	3 cut(s)	71, 111, 434
HapII	CCGG	4 cut(s)	170, 293, 866, 990
HgaI	GACGC	1 cut(s)	132
HhaI	GCGC	1 cut(s)	178
Hin6I	GCGC	1 cut(s)	176
HinP1I	GCGC	1 cut(s)	176
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HindIII	AAGCTT	1 cut(s)	898
HpaII	CCGG	4 cut(s)	170, 293, 866, 990
HphI	GGTGA	4 cut(s)	120, 494, 725, 871
Hpy166II	GTNNAC	1 cut(s)	370
Hpy188I	TCNGA	3 cut(s)	136, 273, 494
Hpy188III	TCNNGA	8 cut(s)	91, 314, 407, 541, 607, 754, 922, 1051
Hpy8I	GTNNAC	1 cut(s)	370
HpyAV	CCTTC	6 cut(s)	141, 215, 259, 404, 523, 554
HpyCH4III	ACNGT	1 cut(s)	637
HpyCH4IV	ACGT	2 cut(s)	230, 787
HpyCH4V	TGCA	7 cut(s)	28, 41, 182, 401, 464, 710, 893
HpyF10VI	GCNNNNNNNGC	4 cut(s)	47, 184, 470, 1019
HpyF3I	CTNAG	3 cut(s)	120, 272, 566
HpySE526I	ACGT	2 cut(s)	230, 787
HspAI	GCGC	1 cut(s)	176
KpnI	GGTACC	1 cut(s)	388
Ksp22I	TGATCA	2 cut(s)	256, 615
Kzo9I	GATC	4 cut(s)	190, 256, 329, 615
LmnI	GCTCC	4 cut(s)	116, 156, 667, 1042
Lsp1109I	GCAGC	1 cut(s)	40
LweI	GCATC	7 cut(s)	50, 163, 388, 460, 571, 733, 753
MaeI	CTAG	3 cut(s)	32, 47, 474
MaeII	ACGT	2 cut(s)	230, 787
MaeIII	GTNAC	3 cut(s)	8, 144, 545
MalI	GATC	4 cut(s)	192, 258, 331, 617
MboI	GATC	4 cut(s)	190, 256, 329, 615
MhlI	GDGCHC	2 cut(s)	90, 121
MluCI	AATT	1 cut(s)	349
MmeI	TCCRAC	1 cut(s)	183
MnlI	CCTC	8 cut(s)	267, 313, 320, 407, 548, 694, 811, 945
MroXI	GAANNNNTTC	1 cut(s)	729
MseI	TTAA	5 cut(s)	63, 513, 524, 996, 1026
MslI	CAYNNNNRTG	3 cut(s)	752, 774, 1007
MspI	CCGG	4 cut(s)	170, 293, 866, 990
MspR9I	CCNGG	4 cut(s)	114, 170, 693, 991
MvaI	CCWGG	2 cut(s)	114, 693
MwoI	GCNNNNNNNGC	4 cut(s)	47, 184, 470, 1019
NciI	CCSGG	2 cut(s)	170, 991
NcoI	CCATGG	1 cut(s)	832
NdeII	GATC	4 cut(s)	190, 256, 329, 615
NlaIV	GGNNCC	3 cut(s)	291, 386, 663
NmuCI	GTSAC	2 cut(s)	8, 144
NspI	RCATGY	2 cut(s)	1017, 1060
PaeR7I	CTCGAG	2 cut(s)	89, 539
PagI	TCATGA	2 cut(s)	753, 921
PaqCI	CACCTGC	1 cut(s)	701
PceI	AGGCCT	1 cut(s)	434
PciI	ACATGT	1 cut(s)	1056
PdmI	GAANNNNTTC	1 cut(s)	729
PflFI	GACNNNGTC	1 cut(s)	365
PflMI	CCANNNNNTGG	1 cut(s)	833
PinAI	ACCGGT	1 cut(s)	292
PkrI	GCNGC	2 cut(s)	30, 70
PmaCI	CACGTG	1 cut(s)	231
PmlI	CACGTG	1 cut(s)	231
Ppu21I	YACGTR	1 cut(s)	231
PscI	ACATGT	1 cut(s)	1056
Psp124BI	GAGCTC	1 cut(s)	121
Psp1406I	AACGTT	1 cut(s)	787
Psp6I	CCWGG	2 cut(s)	112, 691
PspCI	CACGTG	1 cut(s)	231
PspGI	CCWGG	2 cut(s)	112, 691
PspN4I	GGNNCC	3 cut(s)	291, 386, 663
PspPI	GGNCC	1 cut(s)	110
PstI	CTGCAG	1 cut(s)	184
PsyI	GACNNNGTC	1 cut(s)	365
RsaI	GTAC	5 cut(s)	305, 386, 458, 601, 629
RsaNI	GTAC	5 cut(s)	304, 385, 457, 600, 628
RseI	CAYNNNNRTG	3 cut(s)	752, 774, 1007
SacI	GAGCTC	1 cut(s)	121
SaqAI	TTAA	5 cut(s)	63, 513, 524, 996, 1026
SatI	GCNGC	2 cut(s)	29, 69
Sau3AI	GATC	4 cut(s)	190, 256, 329, 615
Sau96I	GGNCC	1 cut(s)	110
ScaI	AGTACT	1 cut(s)	305
ScrFI	CCNGG	4 cut(s)	114, 170, 693, 991
SduI	GDGCHC	2 cut(s)	90, 121
SfaNI	GCATC	7 cut(s)	50, 163, 388, 460, 571, 733, 753
SfcI	CTRYAG	1 cut(s)	180
Sfr274I	CTCGAG	2 cut(s)	89, 539
SlaI	CTCGAG	2 cut(s)	89, 539
SmiMI	CAYNNNNRTG	3 cut(s)	752, 774, 1007
SmlI	CTYRAG	2 cut(s)	89, 539
SmoI	CTYRAG	2 cut(s)	89, 539
Sse9I	AATT	1 cut(s)	349
SseBI	AGGCCT	1 cut(s)	434
SsiI	CCGC	3 cut(s)	68, 449, 584
SspI	AATATT	1 cut(s)	489
SspMI	CTAG	3 cut(s)	32, 47, 474
SstI	GAGCTC	1 cut(s)	121
StuI	AGGCCT	1 cut(s)	434
StyD4I	CCNGG	4 cut(s)	112, 168, 691, 989
StyI	CCWWGG	2 cut(s)	429, 832
TaaI	ACNGT	1 cut(s)	637
TaiI	ACGT	2 cut(s)	233, 790
TaqI	TCGA	2 cut(s)	90, 540
TasI	AATT	1 cut(s)	349
TatI	WGTACW	2 cut(s)	303, 456
TauI	GCSGC	1 cut(s)	71
Tru1I	TTAA	5 cut(s)	63, 513, 524, 996, 1026
Tru9I	TTAA	5 cut(s)	63, 513, 524, 996, 1026
TscAI	CASTG	3 cut(s)	189, 250, 946
TseFI	GTSAC	2 cut(s)	8, 144
TseI	GCWGC	1 cut(s)	28
Tsp45I	GTSAC	2 cut(s)	8, 144
TspDTI	ATGAA	9 cut(s)	264, 298, 518, 542, 742, 770, 910, 941, 947
TspRI	CASTG	3 cut(s)	189, 250, 946
Tth111I	GACNNNGTC	1 cut(s)	365
Van91I	CCANNNNNTGG	1 cut(s)	833
XapI	RAATTY	1 cut(s)	349
XceI	RCATGY	2 cut(s)	1017, 1060
XhoI	CTCGAG	2 cut(s)	89, 539
XmnI	GAANNNNTTC	1 cut(s)	729
XspI	CTAG	3 cut(s)	32, 47, 474
ZrmI	AGTACT	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.