Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004483.1

Orthogroup ID

OG0004266

Physical Location & Seq

Genomic Coordinates Reverse (-)

107664 .. 108748

Gene Structure 1085 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004483.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

atggatagtcactcccaacgtgccatgcagctagtaagcgcatcactggtgcctatggtgcttaaagcagccatagaacttggtgtgcttgacataatacatagagctggccctggagctctgctctcaccttcccaaattgcgtctcagctcccttctcagaacaacccaggtgcctctttagtgcttgatcgtatgcttcgccttctgtctgcccactcagttctcacttgctctgtttccgcccaccaagttgatcatgtggaagttttgaggctttatggattggcccccgttgccaagtatttcattcgggatcaggatggagcatcattagcaactttactaaattattgcaatgataaggtcaacacagatagctggtaccatttggcagatgcagttttggaaggaggaattccatttaccaagacctatggaatggatgtggtggagtatctagggaaagatgccagatgtggtgtaaatacactcgtagatgtgggtggtggtgatggtactatccttaacatgattgtctccaagtaccctaccatcaagggtatcaactatgatttagcttctattatagaaaagtctccctcctatcctggtatagagcatattgcaggagatatgtttgtaaggattccgaaaggagatgccattttcatgaaggtcagtgactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

229

Amino Acids

24.61

Weight (kDa)

5.76

Isoelectric Point (pI)

29.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33030 AT1G33030 AT1G33030
fragaria_vesca	FvH4_5g10440
malus_domestica	MD14G1140100.v1.1 MD14G1140300.v1.1 MD14G1140600.v1.1 MD14G1140900.v1.1
prunus_persica	Prupe.5G134400_v2.0.a1 Prupe.5G134400_v2.0.a1
pyrus_communis	pycom14g11580
rosa_chinensis	RchiOBHm_Chr7g0187771 RchiOBHm_Chr7g0187791
rosa_laevigata	RLG00000004756 RLG00000004757
rosa_multiflora	Rmu_sc0004483.1_g000030 Rmu_sc0004483.1_g000036
rosa_roxburghii	Rroxscaffold_3G00267080 Rroxscaffold_3G00267090
rosa_rugosa	Rorug06G0484100.1 Rorug06G0484200
rosa_samantha	Rh7AG089200 Rh7AG089400 Rh7BG091000 Rh7BG091100 Rh7CG090000 Rh7CG090100 Rh7CG090200 Rh7DG091600 Rh7DG091800
rosa_wichuraiana	Rw7G007700 Rw7G007710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	384
AccB1I	GGYRCC	3 cut(s)	49, 173, 384
AciI	CCGC	1 cut(s)	243
AclWI	GGATC	1 cut(s)	324
AcsI	RAATTY	1 cut(s)	417
AfaI	GTAC	3 cut(s)	386, 520, 548
AjnI	CCWGG	3 cut(s)	112, 169, 610
AluBI	AGCT	6 cut(s)	31, 107, 119, 151, 381, 581
AluI	AGCT	6 cut(s)	31, 107, 119, 151, 381, 581
Alw21I	GWGCWC	1 cut(s)	121
Alw26I	GTCTC	3 cut(s)	150, 544, 603
AlwI	GGATC	1 cut(s)	324
AoxI	GGCC	2 cut(s)	109, 288
ApeKI	GCWGC	2 cut(s)	28, 68
ApoI	RAATTY	1 cut(s)	417
Asp718I	GGTACC	1 cut(s)	384
AspLEI	GCGC	1 cut(s)	41
AspS9I	GGNCC	2 cut(s)	110, 289
AsuHPI	GGTGA	2 cut(s)	120, 524
BanI	GGYRCC	3 cut(s)	49, 173, 384
BanII	GRGCYC	1 cut(s)	121
Bbv12I	GWGCWC	1 cut(s)	121
BbvI	GCAGC	2 cut(s)	40, 80
BccI	CCATC	3 cut(s)	317, 509, 563
BciT130I	CCWGG	3 cut(s)	114, 171, 612
BclI	TGATCA	1 cut(s)	256
BcoDI	GTCTC	3 cut(s)	150, 544, 603
BfaI	CTAG	3 cut(s)	32, 461, 688
BisI	GCNGC	2 cut(s)	29, 69
BlsI	GCNGC	2 cut(s)	30, 70
Bme1390I	CCNGG	3 cut(s)	114, 171, 612
BmgT120I	GGNCC	2 cut(s)	110, 289
BmiI	GGNNCC	4 cut(s)	51, 175, 291, 386
BmrFI	CCNGG	3 cut(s)	114, 171, 612
BmsI	GCATC	5 cut(s)	50, 338, 388, 460, 652
BplI	GAGNNNNNCTC	2 cut(s)	108, 140
BpmI	CTGGAG	1 cut(s)	135
BsaJI	CCNNGG	2 cut(s)	112, 169
Bse1I	ACTGG	1 cut(s)	51
Bse3DI	GCAATG	1 cut(s)	364
BseBI	CCWGG	3 cut(s)	114, 171, 612
BseDI	CCNNGG	2 cut(s)	112, 169
BseGI	GGATG	2 cut(s)	328, 451
BseMI	GCAATG	1 cut(s)	364
BseMII	CTCAG	3 cut(s)	161, 173, 234
BseNI	ACTGG	1 cut(s)	51
BseXI	GCAGC	2 cut(s)	40, 80
BshFI	GGCC	2 cut(s)	111, 290
BshNI	GGYRCC	3 cut(s)	49, 173, 384
BsiHKAI	GWGCWC	1 cut(s)	121
BsmAI	GTCTC	3 cut(s)	150, 544, 603
BsmBI	CGTCTC	1 cut(s)	150
BsnI	GGCC	2 cut(s)	111, 290
Bsp1286I	GDGCHC	1 cut(s)	121
Bsp143I	GATC	3 cut(s)	190, 256, 316
BspACI	CCGC	1 cut(s)	243
BspANI	GGCC	2 cut(s)	111, 290
BspCNI	CTCAG	3 cut(s)	160, 172, 233
BspHI	TCATGA	1 cut(s)	672
BspLI	GGNNCC	4 cut(s)	51, 175, 291, 386
BspPI	GGATC	1 cut(s)	324
BspT107I	GGYRCC	3 cut(s)	49, 173, 384
BsrDI	GCAATG	1 cut(s)	364
BsrI	ACTGG	1 cut(s)	51
BssECI	CCNNGG	2 cut(s)	112, 169
BssMI	GATC	3 cut(s)	190, 256, 316
Bst2UI	CCWGG	3 cut(s)	114, 171, 612
BstC8I	GCNNGC	1 cut(s)	109
BstDEI	CTNAG	3 cut(s)	147, 159, 220
BstF5I	GGATG	2 cut(s)	328, 451
BstHHI	GCGC	1 cut(s)	41
BstKTI	GATC	3 cut(s)	193, 259, 319
BstMAI	GTCTC	3 cut(s)	150, 544, 603
BstMBI	GATC	3 cut(s)	190, 256, 316
BstMWI	GCNNNNNNNGC	3 cut(s)	58, 296, 335
BstNI	CCWGG	3 cut(s)	114, 171, 612
BstSCI	CCNGG	3 cut(s)	112, 169, 610
BstV1I	GCAGC	2 cut(s)	40, 80
BsuRI	GGCC	2 cut(s)	111, 290
BtsCI	GGATG	2 cut(s)	328, 451
BtsIMutI	CAGTG	2 cut(s)	44, 688
Cac8I	GCNNGC	1 cut(s)	109
CciI	TCATGA	1 cut(s)	672
CfoI	GCGC	1 cut(s)	41
Cfr13I	GGNCC	2 cut(s)	110, 289
CseI	GACGC	1 cut(s)	132
Csp6I	GTAC	3 cut(s)	385, 519, 547
CviAII	CATG	4 cut(s)	25, 260, 532, 673
CviQI	GTAC	3 cut(s)	385, 519, 547
DdeI	CTNAG	3 cut(s)	147, 159, 220
DpnI	GATC	3 cut(s)	192, 258, 318
DpnII	GATC	3 cut(s)	190, 256, 316
EciI	GGCGGA	1 cut(s)	232
Ecl136II	GAGCTC	1 cut(s)	119
Eco24I	GRGCYC	1 cut(s)	121
Eco53kI	GAGCTC	1 cut(s)	119
EcoICRI	GAGCTC	1 cut(s)	119
EcoRI	GAATTC	1 cut(s)	417
EcoRII	CCWGG	3 cut(s)	112, 169, 610
EcoT38I	GRGCYC	1 cut(s)	121
Esp3I	CGTCTC	1 cut(s)	150
FaeI	CATG	4 cut(s)	28, 263, 535, 676
FatI	CATG	4 cut(s)	24, 259, 531, 672
FbaI	TGATCA	1 cut(s)	256
Fnu4HI	GCNGC	2 cut(s)	29, 69
FokI	GGATG	2 cut(s)	335, 458
FriOI	GRGCYC	1 cut(s)	121
Fsp4HI	GCNGC	2 cut(s)	29, 69
FspBI	CTAG	3 cut(s)	32, 461, 688
GlaI	GCGC	1 cut(s)	40
GluI	GCNGC	2 cut(s)	29, 69
GsuI	CTGGAG	1 cut(s)	135
HaeIII	GGCC	2 cut(s)	111, 290
HgaI	GACGC	1 cut(s)	132
HhaI	GCGC	1 cut(s)	41
Hin1II	CATG	4 cut(s)	28, 263, 535, 676
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HinfI	GANTC	1 cut(s)	649
HphI	GGTGA	2 cut(s)	120, 524
Hpy166II	GTNNAC	1 cut(s)	370
Hpy188I	TCNGA	2 cut(s)	162, 654
Hpy188III	TCNNGA	3 cut(s)	314, 320, 673
Hpy8I	GTNNAC	1 cut(s)	370
HpyAV	CCTTC	5 cut(s)	141, 165, 215, 404, 670
HpyCH4IV	ACGT	1 cut(s)	19
HpyCH4V	TGCA	4 cut(s)	28, 357, 401, 629
HpyF10VI	GCNNNNNNNGC	3 cut(s)	58, 296, 335
HpyF3I	CTNAG	3 cut(s)	147, 159, 220
HpySE526I	ACGT	1 cut(s)	19
Hsp92II	CATG	4 cut(s)	28, 263, 535, 676
HspAI	GCGC	1 cut(s)	39
KpnI	GGTACC	1 cut(s)	388
Ksp22I	TGATCA	1 cut(s)	256
Kzo9I	GATC	3 cut(s)	190, 256, 316
LmnI	GCTCC	3 cut(s)	116, 156, 326
Lsp1109I	GCAGC	2 cut(s)	40, 80
LweI	GCATC	5 cut(s)	50, 338, 388, 460, 652
MaeI	CTAG	3 cut(s)	32, 461, 688
MaeII	ACGT	1 cut(s)	19
MaeIII	GTNAC	2 cut(s)	8, 683
MalI	GATC	3 cut(s)	192, 258, 318
MboI	GATC	3 cut(s)	190, 256, 316
MhlI	GDGCHC	1 cut(s)	121
MluCI	AATT	3 cut(s)	138, 349, 417
MnlI	CCTC	4 cut(s)	187, 267, 407, 613
MseI	TTAA	2 cut(s)	63, 528
MslI	CAYNNNNRTG	1 cut(s)	671
MspR9I	CCNGG	3 cut(s)	114, 171, 612
MvaI	CCWGG	3 cut(s)	114, 171, 612
MwoI	GCNNNNNNNGC	3 cut(s)	58, 296, 335
NdeII	GATC	3 cut(s)	190, 256, 316
NlaIII	CATG	4 cut(s)	28, 263, 535, 676
NlaIV	GGNNCC	4 cut(s)	51, 175, 291, 386
NmuCI	GTSAC	2 cut(s)	8, 683
PagI	TCATGA	1 cut(s)	672
PfeI	GAWTC	1 cut(s)	649
PkrI	GCNGC	2 cut(s)	30, 70
Psp124BI	GAGCTC	1 cut(s)	121
Psp6I	CCWGG	3 cut(s)	112, 169, 610
PspGI	CCWGG	3 cut(s)	112, 169, 610
PspN4I	GGNNCC	4 cut(s)	51, 175, 291, 386
PspPI	GGNCC	2 cut(s)	110, 289
RsaI	GTAC	3 cut(s)	386, 520, 548
RsaNI	GTAC	3 cut(s)	385, 519, 547
RseI	CAYNNNNRTG	1 cut(s)	671
SacI	GAGCTC	1 cut(s)	121
SaqAI	TTAA	2 cut(s)	63, 528
SatI	GCNGC	2 cut(s)	29, 69
Sau3AI	GATC	3 cut(s)	190, 256, 316
Sau96I	GGNCC	2 cut(s)	110, 289
ScrFI	CCNGG	3 cut(s)	114, 171, 612
SduI	GDGCHC	1 cut(s)	121
SfaNI	GCATC	5 cut(s)	50, 338, 388, 460, 652
SmiMI	CAYNNNNRTG	1 cut(s)	671
Sse9I	AATT	3 cut(s)	138, 349, 417
SsiI	CCGC	1 cut(s)	243
SspMI	CTAG	3 cut(s)	32, 461, 688
SstI	GAGCTC	1 cut(s)	121
StyD4I	CCNGG	3 cut(s)	112, 169, 610
TaiI	ACGT	1 cut(s)	22
TasI	AATT	3 cut(s)	138, 349, 417
TfiI	GAWTC	1 cut(s)	649
Tru1I	TTAA	2 cut(s)	63, 528
Tru9I	TTAA	2 cut(s)	63, 528
TscAI	CASTG	2 cut(s)	51, 688
TseFI	GTSAC	2 cut(s)	8, 683
TseI	GCWGC	2 cut(s)	28, 68
Tsp45I	GTSAC	2 cut(s)	8, 683
TspDTI	ATGAA	3 cut(s)	298, 661, 689
TspRI	CASTG	2 cut(s)	51, 688
XapI	RAATTY	1 cut(s)	417
XspI	CTAG	3 cut(s)	32, 461, 688

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.