Rh7BG091100

caffeic acid

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0004266
Physical Location & Seq
Reverse (-)
6716163 .. 6716540
378 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG091100.1

Sequence Viewer

Length: 378 bp
ATGGTGCTTAAAGCAGCCATAGAACTTGGTCTGCTCGACATAATACACAGAGCTGGCCCTGGAGTTCAGCTTTCATCTTCCGAAATAGCGTCACAGCTCCCCTCTCACAACAACCCAGATGCTCCTGTAGTGCTTGATCGTATGCTTCACCTTCTGTCTGCTCACTCCATTCTCACTTGCTCAGTTTCCACTGATGAAGCTGATCATGTGAAGGTTCTGAGGCTTTATGGTTTGGCACCGGTTGCCAAGTACTTCATTCTGGACCAGGATGGAGGATCATTAGCAACTTTACTAAATTTTTGCCATGACAAGGTCAACACAGATAGCTGGTACTACATTCTCATACAAAGCCTGTTTGTTTGTGTTTCCCTTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dimerisation Methyltransf_2

Protein Analysis

125

Amino Acids

13.68

Weight (kDa)

5.51

Isoelectric Point (pI)

41.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimerisation PF08100 1 - 86 2.7e-14 O-methyltransferase dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 235
AclWI GGATC 1 cut(s) 283
AcsI RAATTY 1 cut(s) 295
AfaI GTAC 2 cut(s) 251, 332
AfiI CCNNNNNNNGG 1 cut(s) 310
AgeI ACCGGT 1 cut(s) 238
AjnI CCWGG 2 cut(s) 58, 264
AluBI AGCT 5 cut(s) 53, 70, 97, 200, 327
AluI AGCT 5 cut(s) 53, 70, 97, 200, 327
AlwI GGATC 1 cut(s) 283
AoxI GGCC 1 cut(s) 55
ApeKI GCWGC 1 cut(s) 14
ApoI RAATTY 1 cut(s) 295
AsiGI ACCGGT 1 cut(s) 238
AspS9I GGNCC 2 cut(s) 56, 262
AsuHPI GGTGA 1 cut(s) 140
AvaII GGWCC 1 cut(s) 262
BanI GGYRCC 1 cut(s) 235
BbvI GCAGC 1 cut(s) 26
BccI CCATC 1 cut(s) 263
BciT130I CCWGG 2 cut(s) 60, 266
BclI TGATCA 1 cut(s) 202
BfmI CTRYAG 1 cut(s) 126
BisI GCNGC 1 cut(s) 15
BlsI GCNGC 1 cut(s) 16
BmcAI AGTACT 1 cut(s) 251
Bme1390I CCNGG 2 cut(s) 60, 266
Bme18I GGWCC 1 cut(s) 262
BmgT120I GGNCC 2 cut(s) 56, 262
BmiI GGNNCC 1 cut(s) 237
BmrFI CCNGG 2 cut(s) 60, 266
BmsI GCATC 1 cut(s) 109
BpmI CTGGAG 1 cut(s) 81
BsaJI CCNNGG 1 cut(s) 58
BsaWI WCCGGW 1 cut(s) 238
Bsc4I CCNNNNNNNGG 1 cut(s) 310
Bse118I RCCGGY 1 cut(s) 238
BseBI CCWGG 2 cut(s) 60, 266
BseDI CCNNGG 1 cut(s) 58
BseGI GGATG 1 cut(s) 274
BseLI CCNNNNNNNGG 1 cut(s) 310
BseMII CTCAG 2 cut(s) 195, 209
BseXI GCAGC 1 cut(s) 26
BshFI GGCC 1 cut(s) 57
BshNI GGYRCC 1 cut(s) 235
BshTI ACCGGT 1 cut(s) 238
BsiSI CCGG 1 cut(s) 239
BslI CCNNNNNNNGG 1 cut(s) 310
BsnI GGCC 1 cut(s) 57
Bsp143I GATC 3 cut(s) 136, 202, 275
BspANI GGCC 1 cut(s) 57
BspCNI CTCAG 2 cut(s) 194, 210
BspLI GGNNCC 1 cut(s) 237
BspPI GGATC 1 cut(s) 283
BspT107I GGYRCC 1 cut(s) 235
BsrFI RCCGGY 1 cut(s) 238
BssAI RCCGGY 1 cut(s) 238
BssECI CCNNGG 1 cut(s) 58
BssMI GATC 3 cut(s) 136, 202, 275
Bst2UI CCWGG 2 cut(s) 60, 266
BstAPI GCANNNNNTGC 1 cut(s) 242
BstC8I GCNNGC 1 cut(s) 55
BstDEI CTNAG 2 cut(s) 181, 218
BstF5I GGATG 1 cut(s) 274
BstKTI GATC 3 cut(s) 139, 205, 278
BstMBI GATC 3 cut(s) 136, 202, 275
BstMWI GCNNNNNNNGC 1 cut(s) 242
BstNI CCWGG 2 cut(s) 60, 266
BstSCI CCNGG 2 cut(s) 58, 264
BstSFI CTRYAG 1 cut(s) 126
BstV1I GCAGC 1 cut(s) 26
BsuRI GGCC 1 cut(s) 57
BtsCI GGATG 1 cut(s) 274
BtsIMutI CAGTG 1 cut(s) 189
Cac8I GCNNGC 1 cut(s) 55
Cfr10I RCCGGY 1 cut(s) 238
Cfr13I GGNCC 2 cut(s) 56, 262
CseI GACGC 1 cut(s) 78
Csp6I GTAC 2 cut(s) 250, 331
CspAI ACCGGT 1 cut(s) 238
CviAII CATG 2 cut(s) 206, 305
CviJI RGCY 9 cut(s) 17, 53, 57, 70, 97, 200, 223, 327, 351
CviKI_1 RGCY 9 cut(s) 17, 53, 57, 70, 97, 200, 223, 327, 351
CviQI GTAC 2 cut(s) 250, 331
DdeI CTNAG 2 cut(s) 181, 218
DpnI GATC 3 cut(s) 138, 204, 277
DpnII GATC 3 cut(s) 136, 202, 275
Eco47I GGWCC 1 cut(s) 262
EcoRII CCWGG 2 cut(s) 58, 264
FaeI CATG 2 cut(s) 209, 308
FaiI YATR 7 cut(s) 20, 41, 143, 207, 228, 306, 344
FatI CATG 2 cut(s) 205, 304
FbaI TGATCA 1 cut(s) 202
Fnu4HI GCNGC 1 cut(s) 15
FokI GGATG 1 cut(s) 281
Fsp4HI GCNGC 1 cut(s) 15
GluI GCNGC 1 cut(s) 15
GsuI CTGGAG 1 cut(s) 81
HaeIII GGCC 1 cut(s) 57
HapII CCGG 1 cut(s) 239
HgaI GACGC 1 cut(s) 78
Hin1II CATG 2 cut(s) 209, 308
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HpaII CCGG 1 cut(s) 239
HphI GGTGA 1 cut(s) 140
Hpy166II GTNNAC 1 cut(s) 316
Hpy188I TCNGA 2 cut(s) 82, 219
Hpy188III TCNNGA 1 cut(s) 260
Hpy8I GTNNAC 1 cut(s) 316
HpyAV CCTTC 2 cut(s) 161, 205
HpyF10VI GCNNNNNNNGC 1 cut(s) 242
HpyF3I CTNAG 2 cut(s) 181, 218
Hsp92II CATG 2 cut(s) 209, 308
Ksp22I TGATCA 1 cut(s) 202
Kzo9I GATC 3 cut(s) 136, 202, 275
LmnI GCTCC 2 cut(s) 102, 127
Lsp1109I GCAGC 1 cut(s) 26
LweI GCATC 1 cut(s) 109
MaeIII GTNAC 1 cut(s) 90
MalI GATC 3 cut(s) 138, 204, 277
MboI GATC 3 cut(s) 136, 202, 275
MboII GAAGA 1 cut(s) 69
MluCI AATT 1 cut(s) 295
MnlI CCTC 3 cut(s) 112, 213, 266
MseI TTAA 1 cut(s) 9
MspI CCGG 1 cut(s) 239
MspR9I CCNGG 2 cut(s) 60, 266
MvaI CCWGG 2 cut(s) 60, 266
MwoI GCNNNNNNNGC 1 cut(s) 242
NdeII GATC 3 cut(s) 136, 202, 275
NlaIII CATG 2 cut(s) 209, 308
NlaIV GGNNCC 1 cut(s) 237
NmuCI GTSAC 1 cut(s) 90
PflFI GACNNNGTC 1 cut(s) 311
PinAI ACCGGT 1 cut(s) 238
PkrI GCNGC 1 cut(s) 16
Psp6I CCWGG 2 cut(s) 58, 264
PspGI CCWGG 2 cut(s) 58, 264
PspN4I GGNNCC 1 cut(s) 237
PspPI GGNCC 2 cut(s) 56, 262
PsyI GACNNNGTC 1 cut(s) 311
RsaI GTAC 2 cut(s) 251, 332
RsaNI GTAC 2 cut(s) 250, 331
SaqAI TTAA 1 cut(s) 9
SatI GCNGC 1 cut(s) 15
Sau3AI GATC 3 cut(s) 136, 202, 275
Sau96I GGNCC 2 cut(s) 56, 262
ScaI AGTACT 1 cut(s) 251
ScrFI CCNGG 2 cut(s) 60, 266
SetI ASST 8 cut(s) 55, 72, 99, 153, 202, 216, 315, 329
SfaNI GCATC 1 cut(s) 109
SfcI CTRYAG 1 cut(s) 126
SinI GGWCC 1 cut(s) 262
Sse9I AATT 1 cut(s) 295
StyD4I CCNGG 2 cut(s) 58, 264
TaqI TCGA 1 cut(s) 36
TasI AATT 1 cut(s) 295
TatI WGTACW 1 cut(s) 249
Tru1I TTAA 1 cut(s) 9
Tru9I TTAA 1 cut(s) 9
TscAI CASTG 1 cut(s) 196
TseFI GTSAC 1 cut(s) 90
TseI GCWGC 1 cut(s) 14
Tsp45I GTSAC 1 cut(s) 90
TspDTI ATGAA 3 cut(s) 63, 210, 244
TspRI CASTG 1 cut(s) 196
Tth111I GACNNNGTC 1 cut(s) 311
VpaK11BI GGWCC 1 cut(s) 262
XapI RAATTY 1 cut(s) 295
ZrmI AGTACT 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.