Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0004266

Physical Location & Seq

Genomic Coordinates Reverse (-)

7696357 .. 7697278

Gene Structure 922 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG091600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGCAGCTAGTAAGCGCATCACTGGTGCCTATGGTGCTTAAAGCAGCCATAGAACTTGGTGTGCTTGACATAATACATAGAGCTGGCCCTGGAGCTCTGCTTTCACCTTCCCAAATTGCGTCTCAGCTCCCTTCCCAGAACAACCCAGGTGCCTCTTTAGTGCTTGATCGTATGCTTCGCCTTCTGTCTGCCCACTCAGTTCTCACTTGCTCTGTTTCCGCCCACCAAGTTGATCATGTGGAGGTTTTGAGGCTTTATGGATTGGCCCCCGTTGCCAAGTATTTCATTCGGGATCAGGATGGAGCATCATTAGCAACTTTACTAAATTATTGCAATGATAAGCATATTGCAGGAGATATGTTTGTAAGGATTCCGAAAGGAGATGCCATTTTCATGAAGTGGGTACTACACCTTTTCGATGACAAACATTGCTTGATGATACTAAAGAACTGCTATGAGGCCTTGCTAGACCATGGGAAAATGATGGTGGTAAATTTGGTTATACCAGAAGCCCCTGAAACTAGTCTTTCTGCTAAAAGCTTGTTTCAGTTTGATATGTTCCTGATGAACACCACTACAAGTGAAAGGGAGAGGACAGAGAAAGAATTCGAAAGTTTGGCAAAACAAGCAGGGTTTTACACCATTCGAGTGGCATGTTCTGCATTTAATTTTTCAGTGGTGGAGCTTTTCAAGAGCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

233

Amino Acids

25.83

Weight (kDa)

6.44

Isoelectric Point (pI)

28.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	1 - 97	1e-16	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	114 - 212	2.4e-26	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33030 AT1G33030 AT1G33030
fragaria_vesca	FvH4_5g10440
malus_domestica	MD14G1140100.v1.1 MD14G1140300.v1.1 MD14G1140600.v1.1 MD14G1140900.v1.1
prunus_persica	Prupe.5G134400_v2.0.a1 Prupe.5G134400_v2.0.a1
pyrus_communis	pycom14g11580
rosa_chinensis	RchiOBHm_Chr7g0187771 RchiOBHm_Chr7g0187791
rosa_laevigata	RLG00000004756 RLG00000004757
rosa_multiflora	Rmu_sc0004483.1_g000030 Rmu_sc0004483.1_g000036
rosa_roxburghii	Rroxscaffold_3G00267080 Rroxscaffold_3G00267090
rosa_rugosa	Rorug06G0484100.1 Rorug06G0484200
rosa_samantha	Rh7AG089200 Rh7AG089400 Rh7BG091000 Rh7BG091100 Rh7CG090000 Rh7CG090100 Rh7CG090200 Rh7DG091600 Rh7DG091800
rosa_wichuraiana	Rw7G007700 Rw7G007710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	25, 149
AciI	CCGC	1 cut(s)	219
AclWI	GGATC	1 cut(s)	300
AcsI	RAATTY	2 cut(s)	493, 605
AfaI	GTAC	1 cut(s)	405
AgsI	TTSAA	1 cut(s)	691
AhlI	ACTAGT	1 cut(s)	521
AjnI	CCWGG	2 cut(s)	88, 145
AluBI	AGCT	6 cut(s)	7, 83, 95, 127, 540, 685
AluI	AGCT	6 cut(s)	7, 83, 95, 127, 540, 685
Alw21I	GWGCWC	1 cut(s)	97
Alw26I	GTCTC	1 cut(s)	126
AlwI	GGATC	1 cut(s)	300
AoxI	GGCC	3 cut(s)	85, 264, 459
ApeKI	GCWGC	2 cut(s)	4, 44
ApoI	RAATTY	2 cut(s)	493, 605
Asp700I	GAANNNNTTC	1 cut(s)	605
AspLEI	GCGC	1 cut(s)	17
AspS9I	GGNCC	2 cut(s)	86, 265
AsuHPI	GGTGA	1 cut(s)	96
AsuII	TTCGAA	1 cut(s)	609
BanI	GGYRCC	2 cut(s)	25, 149
BanII	GRGCYC	1 cut(s)	97
Bbv12I	GWGCWC	1 cut(s)	97
BbvI	GCAGC	2 cut(s)	16, 56
BccI	CCATC	2 cut(s)	293, 478
BciT130I	CCWGG	2 cut(s)	90, 147
BclI	TGATCA	1 cut(s)	232
BcoDI	GTCTC	1 cut(s)	126
BcuI	ACTAGT	1 cut(s)	521
BfaI	CTAG	3 cut(s)	8, 467, 522
BisI	GCNGC	2 cut(s)	5, 45
BlsI	GCNGC	2 cut(s)	6, 46
Bme1390I	CCNGG	2 cut(s)	90, 147
BmgT120I	GGNCC	2 cut(s)	86, 265
BmiI	GGNNCC	3 cut(s)	27, 151, 267
BmrFI	CCNGG	2 cut(s)	90, 147
BmsI	GCATC	3 cut(s)	26, 314, 373
BpmI	CTGGAG	1 cut(s)	111
Bpu14I	TTCGAA	1 cut(s)	609
BsaJI	CCNNGG	3 cut(s)	88, 145, 472
Bse1I	ACTGG	1 cut(s)	27
Bse3DI	GCAATG	2 cut(s)	340, 427
BseBI	CCWGG	2 cut(s)	90, 147
BseDI	CCNNGG	3 cut(s)	88, 145, 472
BseGI	GGATG	1 cut(s)	304
BseMI	GCAATG	2 cut(s)	340, 427
BseMII	CTCAG	2 cut(s)	137, 210
BseNI	ACTGG	1 cut(s)	27
BseXI	GCAGC	2 cut(s)	16, 56
BshFI	GGCC	3 cut(s)	87, 266, 461
BshNI	GGYRCC	2 cut(s)	25, 149
BsiHKAI	GWGCWC	1 cut(s)	97
BsmAI	GTCTC	1 cut(s)	126
BsmBI	CGTCTC	1 cut(s)	126
BsnI	GGCC	3 cut(s)	87, 266, 461
Bsp119I	TTCGAA	1 cut(s)	609
Bsp1286I	GDGCHC	1 cut(s)	97
Bsp143I	GATC	3 cut(s)	166, 232, 292
Bsp19I	CCATGG	1 cut(s)	472
BspACI	CCGC	1 cut(s)	219
BspANI	GGCC	3 cut(s)	87, 266, 461
BspCNI	CTCAG	2 cut(s)	136, 209
BspHI	TCATGA	1 cut(s)	393
BspLI	GGNNCC	3 cut(s)	27, 151, 267
BspPI	GGATC	1 cut(s)	300
BspT104I	TTCGAA	1 cut(s)	609
BspT107I	GGYRCC	2 cut(s)	25, 149
BsrDI	GCAATG	2 cut(s)	340, 427
BsrI	ACTGG	1 cut(s)	27
BssECI	CCNNGG	3 cut(s)	88, 145, 472
BssMI	GATC	3 cut(s)	166, 232, 292
BssT1I	CCWWGG	1 cut(s)	472
Bst2UI	CCWGG	2 cut(s)	90, 147
BstAPI	GCANNNNNTGC	1 cut(s)	659
BstBI	TTCGAA	1 cut(s)	609
BstC8I	GCNNGC	1 cut(s)	85
BstDEI	CTNAG	2 cut(s)	123, 196
BstDSI	CCRYGG	1 cut(s)	472
BstF5I	GGATG	1 cut(s)	304
BstHHI	GCGC	1 cut(s)	17
BstKTI	GATC	3 cut(s)	169, 235, 295
BstMAI	GTCTC	1 cut(s)	126
BstMBI	GATC	3 cut(s)	166, 232, 292
BstMWI	GCNNNNNNNGC	5 cut(s)	34, 272, 311, 626, 659
BstNI	CCWGG	2 cut(s)	90, 147
BstNSI	RCATGY	2 cut(s)	657, 700
BstSCI	CCNGG	2 cut(s)	88, 145
BstV1I	GCAGC	2 cut(s)	16, 56
BstXI	CCANNNNNNTGG	1 cut(s)	649
BsuRI	GGCC	3 cut(s)	87, 266, 461
BtgI	CCRYGG	1 cut(s)	472
BtsCI	GGATG	1 cut(s)	304
BtsIMutI	CAGTG	2 cut(s)	20, 681
Cac8I	GCNNGC	1 cut(s)	85
CciI	TCATGA	1 cut(s)	393
CfoI	GCGC	1 cut(s)	17
Cfr13I	GGNCC	2 cut(s)	86, 265
CseI	GACGC	1 cut(s)	108
Csp6I	GTAC	1 cut(s)	404
CviAII	CATG	5 cut(s)	236, 394, 473, 654, 697
CviQI	GTAC	1 cut(s)	404
DdeI	CTNAG	2 cut(s)	123, 196
DpnI	GATC	3 cut(s)	168, 234, 294
DpnII	GATC	3 cut(s)	166, 232, 292
EciI	GGCGGA	1 cut(s)	208
Ecl136II	GAGCTC	1 cut(s)	95
Eco130I	CCWWGG	1 cut(s)	472
Eco147I	AGGCCT	1 cut(s)	461
Eco24I	GRGCYC	1 cut(s)	97
Eco53kI	GAGCTC	1 cut(s)	95
EcoICRI	GAGCTC	1 cut(s)	95
EcoRI	GAATTC	1 cut(s)	605
EcoRII	CCWGG	2 cut(s)	88, 145
EcoT14I	CCWWGG	1 cut(s)	472
EcoT38I	GRGCYC	1 cut(s)	97
ErhI	CCWWGG	1 cut(s)	472
Esp3I	CGTCTC	1 cut(s)	126
FaeI	CATG	5 cut(s)	239, 397, 476, 657, 700
FatI	CATG	5 cut(s)	235, 393, 472, 653, 696
FbaI	TGATCA	1 cut(s)	232
Fnu4HI	GCNGC	2 cut(s)	5, 45
FokI	GGATG	1 cut(s)	311
FriOI	GRGCYC	1 cut(s)	97
Fsp4HI	GCNGC	2 cut(s)	5, 45
FspBI	CTAG	3 cut(s)	8, 467, 522
GlaI	GCGC	1 cut(s)	16
GluI	GCNGC	2 cut(s)	5, 45
GsuI	CTGGAG	1 cut(s)	111
HaeIII	GGCC	3 cut(s)	87, 266, 461
HgaI	GACGC	1 cut(s)	108
HhaI	GCGC	1 cut(s)	17
Hin1II	CATG	5 cut(s)	239, 397, 476, 657, 700
Hin6I	GCGC	1 cut(s)	15
HinP1I	GCGC	1 cut(s)	15
HindIII	AAGCTT	1 cut(s)	538
HinfI	GANTC	1 cut(s)	370
HphI	GGTGA	1 cut(s)	96
Hpy188I	TCNGA	1 cut(s)	375
Hpy188III	TCNNGA	5 cut(s)	290, 296, 394, 562, 691
HpyAV	CCTTC	3 cut(s)	117, 141, 191
HpyCH4V	TGCA	4 cut(s)	4, 333, 350, 662
HpyF10VI	GCNNNNNNNGC	5 cut(s)	34, 272, 311, 626, 659
HpyF3I	CTNAG	2 cut(s)	123, 196
Hsp92II	CATG	5 cut(s)	239, 397, 476, 657, 700
HspAI	GCGC	1 cut(s)	15
Ksp22I	TGATCA	1 cut(s)	232
Kzo9I	GATC	3 cut(s)	166, 232, 292
LmnI	GCTCC	4 cut(s)	92, 132, 302, 682
Lsp1109I	GCAGC	2 cut(s)	16, 56
LweI	GCATC	3 cut(s)	26, 314, 373
MaeI	CTAG	3 cut(s)	8, 467, 522
MalI	GATC	3 cut(s)	168, 234, 294
MboI	GATC	3 cut(s)	166, 232, 292
MhlI	GDGCHC	1 cut(s)	97
MluCI	AATT	5 cut(s)	114, 325, 493, 605, 667
MnlI	CCTC	5 cut(s)	163, 235, 243, 451, 585
MroXI	GAANNNNTTC	1 cut(s)	605
MseI	TTAA	2 cut(s)	39, 666
MslI	CAYNNNNRTG	2 cut(s)	392, 647
MspR9I	CCNGG	2 cut(s)	90, 147
MvaI	CCWGG	2 cut(s)	90, 147
MwoI	GCNNNNNNNGC	5 cut(s)	34, 272, 311, 626, 659
NcoI	CCATGG	1 cut(s)	472
NdeII	GATC	3 cut(s)	166, 232, 292
NlaIII	CATG	5 cut(s)	239, 397, 476, 657, 700
NlaIV	GGNNCC	3 cut(s)	27, 151, 267
NspI	RCATGY	2 cut(s)	657, 700
NspV	TTCGAA	1 cut(s)	609
PagI	TCATGA	1 cut(s)	393
PceI	AGGCCT	1 cut(s)	461
PdmI	GAANNNNTTC	1 cut(s)	605
PfeI	GAWTC	1 cut(s)	370
PkrI	GCNGC	2 cut(s)	6, 46
Psp124BI	GAGCTC	1 cut(s)	97
Psp6I	CCWGG	2 cut(s)	88, 145
PspGI	CCWGG	2 cut(s)	88, 145
PspN4I	GGNNCC	3 cut(s)	27, 151, 267
PspPI	GGNCC	2 cut(s)	86, 265
RsaI	GTAC	1 cut(s)	405
RsaNI	GTAC	1 cut(s)	404
RseI	CAYNNNNRTG	2 cut(s)	392, 647
SacI	GAGCTC	1 cut(s)	97
SaqAI	TTAA	2 cut(s)	39, 666
SatI	GCNGC	2 cut(s)	5, 45
Sau3AI	GATC	3 cut(s)	166, 232, 292
Sau96I	GGNCC	2 cut(s)	86, 265
ScrFI	CCNGG	2 cut(s)	90, 147
SduI	GDGCHC	1 cut(s)	97
SfaNI	GCATC	3 cut(s)	26, 314, 373
SfuI	TTCGAA	1 cut(s)	609
SmiMI	CAYNNNNRTG	2 cut(s)	392, 647
SpeI	ACTAGT	1 cut(s)	521
Sse9I	AATT	5 cut(s)	114, 325, 493, 605, 667
SseBI	AGGCCT	1 cut(s)	461
SsiI	CCGC	1 cut(s)	219
SspMI	CTAG	3 cut(s)	8, 467, 522
SstI	GAGCTC	1 cut(s)	97
StuI	AGGCCT	1 cut(s)	461
StyD4I	CCNGG	2 cut(s)	88, 145
StyI	CCWWGG	1 cut(s)	472
TaqI	TCGA	3 cut(s)	417, 609, 646
TasI	AATT	5 cut(s)	114, 325, 493, 605, 667
TfiI	GAWTC	1 cut(s)	370
Tru1I	TTAA	2 cut(s)	39, 666
Tru9I	TTAA	2 cut(s)	39, 666
TscAI	CASTG	2 cut(s)	27, 681
TseI	GCWGC	2 cut(s)	4, 44
TspDTI	ATGAA	4 cut(s)	274, 382, 410, 581
TspRI	CASTG	2 cut(s)	27, 681
XapI	RAATTY	2 cut(s)	493, 605
XceI	RCATGY	2 cut(s)	657, 700
XmnI	GAANNNNTTC	1 cut(s)	605
XspI	CTAG	3 cut(s)	8, 467, 522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.