Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0004266

Physical Location & Seq

Genomic Coordinates Reverse (-)

7065472 .. 7066985

Gene Structure 1514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G007700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGATAGTCACTCCCAACATGCCATGCAGCTAGTAAGCGCATCACTGGTGCCTATGGTGCTTAAAGCAGCCATAGAACTTGGTGTGCTTGACATAATACATAGATCGAGTGCCTCTTTAGTGCTTGATCGTATGCTTCGCCTTCTGTCTGCCCACTCAGTTCTCACTTGCTCTGTTTCCGCCCACCAAGTTGATCATGTGGAGGTTTTGAGGCTTTATGGATTGGCCCCCATTGCCAAGTATTTCATTCGGGATCAGGATGGAGCATCATCAGCAACTTTACTAAATTATTGCAATGATCAGGTCAACACAGATAGCTGGTATACTACAACAAATTATAAAGGTTTTGAAGGTGTAAATACACTCGTAGATGTGGGTGGTGGTGATGGTACTATCCTTAACATGATTGTCTCCAAGTACCCTACCATCAAGGGTATCAACTATGATTTAGCTTCTGTTATAAAAAAAGCCAAACACATCCTATCCTGGTACGGATATCAAATTTTGTTTCCCTTCACACAATACAGTATAGAGCATATTGCAGGAGATATGTTTGTAAGGATTCCGAAAGGAGATGCCATTTTCATGAAGTGGGTACTACACCTTTTCGATGACAAACATTGCTTGATGATACTAAAGAACTGCTATGAGGCCTTGCTAGACCAGGGGAAAATGATGGTAGTAAATTTGGTTATACCAGAAGCCCCTGAAACTAGTCTTTCTGCTAAAAGCTTGTTTCAGTTTGATATGTTCCTGATGAACACCACTACAAGTGGAAGGGAGAGGACAGAGAAAGAATTCGAAAGTTTGGCAAAACAAGCAGGGTTTTACACCATTCGAGTGGCATGTTCTGCATTTAATTTTTCAGTGGTGGAGCTTTTCAAGAGCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

297

Amino Acids

33.26

Weight (kDa)

6.35

Isoelectric Point (pI)

26.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	9 - 84	1.5e-08	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	104 - 276	4.7e-46	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33030 AT1G33030 AT1G33030
fragaria_vesca	FvH4_5g10440
malus_domestica	MD14G1140100.v1.1 MD14G1140300.v1.1 MD14G1140600.v1.1 MD14G1140900.v1.1
prunus_persica	Prupe.5G134400_v2.0.a1 Prupe.5G134400_v2.0.a1
pyrus_communis	pycom14g11580
rosa_chinensis	RchiOBHm_Chr7g0187771 RchiOBHm_Chr7g0187791
rosa_laevigata	RLG00000004756 RLG00000004757
rosa_multiflora	Rmu_sc0004483.1_g000030 Rmu_sc0004483.1_g000036
rosa_roxburghii	Rroxscaffold_3G00267080 Rroxscaffold_3G00267090
rosa_rugosa	Rorug06G0484100.1 Rorug06G0484200
rosa_samantha	Rh7AG089200 Rh7AG089400 Rh7BG091000 Rh7BG091100 Rh7CG090000 Rh7CG090100 Rh7CG090200 Rh7DG091600 Rh7DG091800
rosa_wichuraiana	Rw7G007700 Rw7G007710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	339, 461
AccB1I	GGYRCC	1 cut(s)	49
AccI	GTMKAC	1 cut(s)	323
AciI	CCGC	1 cut(s)	180
AclWI	GGATC	1 cut(s)	261
AcsI	RAATTY	3 cut(s)	501, 685, 797
AfaI	GTAC	4 cut(s)	391, 419, 491, 597
AgsI	TTSAA	2 cut(s)	350, 883
AhlI	ACTAGT	1 cut(s)	713
AjnI	CCWGG	2 cut(s)	485, 663
AluBI	AGCT	5 cut(s)	31, 318, 452, 732, 877
AluI	AGCT	5 cut(s)	31, 318, 452, 732, 877
Alw26I	GTCTC	1 cut(s)	415
AlwI	GGATC	1 cut(s)	261
AoxI	GGCC	2 cut(s)	225, 651
ApeKI	GCWGC	2 cut(s)	28, 68
ApoI	RAATTY	3 cut(s)	501, 685, 797
Asp700I	GAANNNNTTC	1 cut(s)	797
AspLEI	GCGC	1 cut(s)	41
AspS9I	GGNCC	1 cut(s)	226
AsuHPI	GGTGA	1 cut(s)	395
AsuII	TTCGAA	1 cut(s)	801
BanI	GGYRCC	1 cut(s)	49
BbvI	GCAGC	2 cut(s)	40, 80
BccI	CCATC	4 cut(s)	254, 380, 434, 670
BciT130I	CCWGG	2 cut(s)	487, 665
BclI	TGATCA	2 cut(s)	193, 298
BcoDI	GTCTC	1 cut(s)	415
BcuI	ACTAGT	1 cut(s)	713
BfaI	CTAG	3 cut(s)	32, 659, 714
BisI	GCNGC	2 cut(s)	29, 69
BlsI	GCNGC	2 cut(s)	30, 70
Bme1390I	CCNGG	2 cut(s)	487, 665
BmgT120I	GGNCC	1 cut(s)	226
BmiI	GGNNCC	2 cut(s)	51, 228
BmrFI	CCNGG	2 cut(s)	487, 665
BmsI	GCATC	3 cut(s)	50, 275, 565
Bpu14I	TTCGAA	1 cut(s)	801
BsaJI	CCNNGG	1 cut(s)	664
Bse1I	ACTGG	1 cut(s)	51
Bse3DI	GCAATG	3 cut(s)	231, 301, 619
BseBI	CCWGG	2 cut(s)	487, 665
BseDI	CCNNGG	1 cut(s)	664
BseGI	GGATG	2 cut(s)	265, 477
BseMI	GCAATG	3 cut(s)	231, 301, 619
BseMII	CTCAG	1 cut(s)	171
BseNI	ACTGG	1 cut(s)	51
BseXI	GCAGC	2 cut(s)	40, 80
BshFI	GGCC	2 cut(s)	227, 653
BshNI	GGYRCC	1 cut(s)	49
BsmAI	GTCTC	1 cut(s)	415
BsnI	GGCC	2 cut(s)	227, 653
Bsp119I	TTCGAA	1 cut(s)	801
Bsp143I	GATC	5 cut(s)	104, 127, 193, 253, 298
BspACI	CCGC	1 cut(s)	180
BspANI	GGCC	2 cut(s)	227, 653
BspCNI	CTCAG	1 cut(s)	170
BspHI	TCATGA	1 cut(s)	585
BspLI	GGNNCC	2 cut(s)	51, 228
BspPI	GGATC	1 cut(s)	261
BspT104I	TTCGAA	1 cut(s)	801
BspT107I	GGYRCC	1 cut(s)	49
BsrDI	GCAATG	3 cut(s)	231, 301, 619
BsrI	ACTGG	1 cut(s)	51
BssECI	CCNNGG	1 cut(s)	664
BssMI	GATC	5 cut(s)	104, 127, 193, 253, 298
BssNAI	GTATAC	1 cut(s)	324
Bst1107I	GTATAC	1 cut(s)	324
Bst2UI	CCWGG	2 cut(s)	487, 665
Bst4CI	ACNGT	1 cut(s)	527
BstAPI	GCANNNNNTGC	1 cut(s)	851
BstBI	TTCGAA	1 cut(s)	801
BstDEI	CTNAG	1 cut(s)	157
BstF5I	GGATG	2 cut(s)	265, 477
BstHHI	GCGC	1 cut(s)	41
BstKTI	GATC	5 cut(s)	107, 130, 196, 256, 301
BstMAI	GTCTC	1 cut(s)	415
BstMBI	GATC	5 cut(s)	104, 127, 193, 253, 298
BstMWI	GCNNNNNNNGC	5 cut(s)	58, 233, 272, 818, 851
BstNI	CCWGG	2 cut(s)	487, 665
BstNSI	RCATGY	3 cut(s)	23, 849, 892
BstSCI	CCNGG	2 cut(s)	485, 663
BstV1I	GCAGC	2 cut(s)	40, 80
BstXI	CCANNNNNNTGG	1 cut(s)	841
BstZ17I	GTATAC	1 cut(s)	324
BsuRI	GGCC	2 cut(s)	227, 653
BtsCI	GGATG	2 cut(s)	265, 477
BtsIMutI	CAGTG	2 cut(s)	44, 873
CciI	TCATGA	1 cut(s)	585
CfoI	GCGC	1 cut(s)	41
Cfr13I	GGNCC	1 cut(s)	226
Csp6I	GTAC	4 cut(s)	390, 418, 490, 596
CviAII	CATG	7 cut(s)	20, 25, 197, 403, 586, 846, 889
CviQI	GTAC	4 cut(s)	390, 418, 490, 596
DdeI	CTNAG	1 cut(s)	157
DpnI	GATC	5 cut(s)	106, 129, 195, 255, 300
DpnII	GATC	5 cut(s)	104, 127, 193, 253, 298
EciI	GGCGGA	1 cut(s)	169
Eco147I	AGGCCT	1 cut(s)	653
Eco32I	GATATC	1 cut(s)	497
EcoRI	GAATTC	1 cut(s)	797
EcoRII	CCWGG	2 cut(s)	485, 663
EcoRV	GATATC	1 cut(s)	497
FaeI	CATG	7 cut(s)	23, 28, 200, 406, 589, 849, 892
FatI	CATG	7 cut(s)	19, 24, 196, 402, 585, 845, 888
FbaI	TGATCA	2 cut(s)	193, 298
FblI	GTMKAC	1 cut(s)	323
Fnu4HI	GCNGC	2 cut(s)	29, 69
FokI	GGATG	2 cut(s)	272, 464
Fsp4HI	GCNGC	2 cut(s)	29, 69
FspBI	CTAG	3 cut(s)	32, 659, 714
GlaI	GCGC	1 cut(s)	40
GluI	GCNGC	2 cut(s)	29, 69
HaeIII	GGCC	2 cut(s)	227, 653
HhaI	GCGC	1 cut(s)	41
Hin1II	CATG	7 cut(s)	23, 28, 200, 406, 589, 849, 892
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HindIII	AAGCTT	1 cut(s)	730
HinfI	GANTC	1 cut(s)	562
HphI	GGTGA	1 cut(s)	395
Hpy166II	GTNNAC	2 cut(s)	307, 324
Hpy188I	TCNGA	1 cut(s)	567
Hpy188III	TCNNGA	5 cut(s)	251, 257, 586, 754, 883
Hpy8I	GTNNAC	2 cut(s)	307, 324
HpyAV	CCTTC	4 cut(s)	152, 344, 523, 771
HpyCH4III	ACNGT	1 cut(s)	527
HpyCH4V	TGCA	4 cut(s)	28, 294, 542, 854
HpyF10VI	GCNNNNNNNGC	5 cut(s)	58, 233, 272, 818, 851
HpyF3I	CTNAG	1 cut(s)	157
Hsp92II	CATG	7 cut(s)	23, 28, 200, 406, 589, 849, 892
HspAI	GCGC	1 cut(s)	39
Ksp22I	TGATCA	2 cut(s)	193, 298
Kzo9I	GATC	5 cut(s)	104, 127, 193, 253, 298
LmnI	GCTCC	2 cut(s)	263, 874
Lsp1109I	GCAGC	2 cut(s)	40, 80
LweI	GCATC	3 cut(s)	50, 275, 565
MaeI	CTAG	3 cut(s)	32, 659, 714
MaeIII	GTNAC	1 cut(s)	8
MalI	GATC	5 cut(s)	106, 129, 195, 255, 300
MboI	GATC	5 cut(s)	104, 127, 193, 253, 298
MluCI	AATT	6 cut(s)	286, 334, 501, 685, 797, 859
MnlI	CCTC	5 cut(s)	124, 196, 204, 643, 777
MroXI	GAANNNNTTC	1 cut(s)	797
MseI	TTAA	3 cut(s)	63, 399, 858
MslI	CAYNNNNRTG	2 cut(s)	584, 839
MspR9I	CCNGG	2 cut(s)	487, 665
MvaI	CCWGG	2 cut(s)	487, 665
MwoI	GCNNNNNNNGC	5 cut(s)	58, 233, 272, 818, 851
NdeII	GATC	5 cut(s)	104, 127, 193, 253, 298
NlaIII	CATG	7 cut(s)	23, 28, 200, 406, 589, 849, 892
NlaIV	GGNNCC	2 cut(s)	51, 228
NmuCI	GTSAC	1 cut(s)	8
NspI	RCATGY	3 cut(s)	23, 849, 892
NspV	TTCGAA	1 cut(s)	801
PagI	TCATGA	1 cut(s)	585
PceI	AGGCCT	1 cut(s)	653
PdmI	GAANNNNTTC	1 cut(s)	797
PfeI	GAWTC	1 cut(s)	562
PkrI	GCNGC	2 cut(s)	30, 70
PsiI	TTATAA	2 cut(s)	339, 461
Psp6I	CCWGG	2 cut(s)	485, 663
PspGI	CCWGG	2 cut(s)	485, 663
PspN4I	GGNNCC	2 cut(s)	51, 228
PspPI	GGNCC	1 cut(s)	226
RsaI	GTAC	4 cut(s)	391, 419, 491, 597
RsaNI	GTAC	4 cut(s)	390, 418, 490, 596
RseI	CAYNNNNRTG	2 cut(s)	584, 839
SaqAI	TTAA	3 cut(s)	63, 399, 858
SatI	GCNGC	2 cut(s)	29, 69
Sau3AI	GATC	5 cut(s)	104, 127, 193, 253, 298
Sau96I	GGNCC	1 cut(s)	226
ScrFI	CCNGG	2 cut(s)	487, 665
SfaNI	GCATC	3 cut(s)	50, 275, 565
SfuI	TTCGAA	1 cut(s)	801
SmiMI	CAYNNNNRTG	2 cut(s)	584, 839
SpeI	ACTAGT	1 cut(s)	713
Sse9I	AATT	6 cut(s)	286, 334, 501, 685, 797, 859
SseBI	AGGCCT	1 cut(s)	653
SsiI	CCGC	1 cut(s)	180
SspMI	CTAG	3 cut(s)	32, 659, 714
StuI	AGGCCT	1 cut(s)	653
StyD4I	CCNGG	2 cut(s)	485, 663
TaaI	ACNGT	1 cut(s)	527
TaqI	TCGA	4 cut(s)	107, 609, 801, 838
TasI	AATT	6 cut(s)	286, 334, 501, 685, 797, 859
TfiI	GAWTC	1 cut(s)	562
Tru1I	TTAA	3 cut(s)	63, 399, 858
Tru9I	TTAA	3 cut(s)	63, 399, 858
TscAI	CASTG	2 cut(s)	51, 873
TseFI	GTSAC	1 cut(s)	8
TseI	GCWGC	2 cut(s)	28, 68
Tsp45I	GTSAC	1 cut(s)	8
TspDTI	ATGAA	4 cut(s)	235, 574, 602, 773
TspGWI	ACGGA	1 cut(s)	507
TspRI	CASTG	2 cut(s)	51, 873
XapI	RAATTY	3 cut(s)	501, 685, 797
XceI	RCATGY	3 cut(s)	23, 849, 892
XmiI	GTMKAC	1 cut(s)	323
XmnI	GAANNNNTTC	1 cut(s)	797
XspI	CTAG	3 cut(s)	32, 659, 714

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.