Rh7CG090200

caffeic acid

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0004266
Physical Location & Seq
Reverse (-)
6772679 .. 6773333
655 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG090200.1

Sequence Viewer

Length: 510 bp
ATGGACAATCACTCCCAATATGCTATGCAGCTAGTAAGCGCATCATTAGCGCCTATGGTGCTTAAAGCAGCCATAGAACTTGGTGTGCTCGACATAATACACAGAGCTGGCCCTGAAGTTCAGCTTTCATCTTCTGAAATAGCGTCACAGCTCCCCTCTCACAACAACCCGGGTGCTCCTGTAGTGCTTGATCGTATGCTTCGCCTTCTGTCTGCTCACTCCATTCTCACTTGCTCAGTTTCCACTGATGAAGCTGATCATGTGAAGGTTCTGAGGCTTTATGGTTTGGCACCGGTTGCCAAGTACTTCATTCTGGACCAGGATGGAGGATCATTAGCAACTTTACTAAATTTTTGCCATGACAAGGTCAACACAGATAGCTGGTACCATTTGACAGATGTAGTTTTGGAAGGAGGAGTTCCATTTACCAAGGCCTATGGCATGAGTGTGGTGGAGTACAACGCAAAAGATGCAAGATATGGTGAAACATTCAGGAACTCAATGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dimerisation Methyltransf_2

Protein Analysis

169

Amino Acids

18.46

Weight (kDa)

5.73

Isoelectric Point (pI)

39.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimerisation PF08100 9 - 104 1.4e-17 O-methyltransferase dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 384
AccB1I GGYRCC 2 cut(s) 289, 384
AclWI GGATC 1 cut(s) 337
AcsI RAATTY 1 cut(s) 349
AcuI CTGAAG 1 cut(s) 135
AfaI GTAC 3 cut(s) 305, 386, 458
AfiI CCNNNNNNNGG 1 cut(s) 364
AgeI ACCGGT 1 cut(s) 292
AjnI CCWGG 1 cut(s) 318
AluBI AGCT 6 cut(s) 31, 107, 124, 151, 254, 381
AluI AGCT 6 cut(s) 31, 107, 124, 151, 254, 381
Alw21I GWGCWC 2 cut(s) 90, 178
AlwI GGATC 1 cut(s) 337
Ama87I CYCGRG 1 cut(s) 169
AoxI GGCC 2 cut(s) 109, 432
ApeKI GCWGC 2 cut(s) 28, 68
ApoI RAATTY 1 cut(s) 349
AsiGI ACCGGT 1 cut(s) 292
Asp718I GGTACC 1 cut(s) 384
AspLEI GCGC 2 cut(s) 41, 52
AspS9I GGNCC 2 cut(s) 110, 316
AsuC2I CCSGG 2 cut(s) 170, 171
AsuHPI GGTGA 1 cut(s) 494
AvaI CYCGRG 1 cut(s) 169
AvaII GGWCC 1 cut(s) 316
BanI GGYRCC 2 cut(s) 289, 384
Bbv12I GWGCWC 2 cut(s) 90, 178
BbvI GCAGC 2 cut(s) 40, 80
BccI CCATC 1 cut(s) 317
BciT130I CCWGG 1 cut(s) 320
BclI TGATCA 1 cut(s) 256
BcnI CCSGG 2 cut(s) 170, 171
BfaI CTAG 1 cut(s) 32
BfmI CTRYAG 1 cut(s) 180
BfoI RGCGCY 1 cut(s) 53
BisI GCNGC 2 cut(s) 29, 69
BlsI GCNGC 2 cut(s) 30, 70
BmcAI AGTACT 1 cut(s) 305
Bme1390I CCNGG 3 cut(s) 170, 171, 320
Bme18I GGWCC 1 cut(s) 316
BmeT110I CYCGRG 1 cut(s) 169
BmgT120I GGNCC 2 cut(s) 110, 316
BmiI GGNNCC 2 cut(s) 291, 386
BmrFI CCNGG 3 cut(s) 170, 171, 320
BmsI GCATC 2 cut(s) 50, 460
BpuMI CCSGG 2 cut(s) 170, 171
BsaJI CCNNGG 2 cut(s) 169, 429
BsaWI WCCGGW 1 cut(s) 292
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 1 cut(s) 364
Bse118I RCCGGY 1 cut(s) 292
BseBI CCWGG 1 cut(s) 320
BseDI CCNNGG 2 cut(s) 169, 429
BseGI GGATG 1 cut(s) 328
BseLI CCNNNNNNNGG 1 cut(s) 364
BseMII CTCAG 2 cut(s) 249, 263
BseRI GAGGAG 1 cut(s) 429
BseXI GCAGC 2 cut(s) 40, 80
BshFI GGCC 2 cut(s) 111, 434
BshNI GGYRCC 2 cut(s) 289, 384
BshTI ACCGGT 1 cut(s) 292
BsiHKAI GWGCWC 2 cut(s) 90, 178
BsiHKCI CYCGRG 1 cut(s) 169
BsiSI CCGG 2 cut(s) 170, 293
BslI CCNNNNNNNGG 1 cut(s) 364
BsnI GGCC 2 cut(s) 111, 434
BsoBI CYCGRG 1 cut(s) 169
Bsp1286I GDGCHC 2 cut(s) 90, 178
Bsp143I GATC 3 cut(s) 190, 256, 329
BspANI GGCC 2 cut(s) 111, 434
BspCNI CTCAG 2 cut(s) 248, 264
BspLI GGNNCC 2 cut(s) 291, 386
BspPI GGATC 1 cut(s) 337
BspT107I GGYRCC 2 cut(s) 289, 384
BsrFI RCCGGY 1 cut(s) 292
BssAI RCCGGY 1 cut(s) 292
BssECI CCNNGG 2 cut(s) 169, 429
BssMI GATC 3 cut(s) 190, 256, 329
BssT1I CCWWGG 1 cut(s) 429
Bst2UI CCWGG 1 cut(s) 320
BstAPI GCANNNNNTGC 2 cut(s) 296, 470
BstC8I GCNNGC 1 cut(s) 109
BstDEI CTNAG 2 cut(s) 235, 272
BstF5I GGATG 1 cut(s) 328
BstH2I RGCGCY 1 cut(s) 53
BstHHI GCGC 2 cut(s) 41, 52
BstKTI GATC 3 cut(s) 193, 259, 332
BstMBI GATC 3 cut(s) 190, 256, 329
BstMWI GCNNNNNNNGC 4 cut(s) 47, 58, 296, 470
BstNI CCWGG 1 cut(s) 320
BstSCI CCNGG 3 cut(s) 168, 169, 318
BstSFI CTRYAG 1 cut(s) 180
BstV1I GCAGC 2 cut(s) 40, 80
BsuRI GGCC 2 cut(s) 111, 434
BtsCI GGATG 1 cut(s) 328
BtsIMutI CAGTG 1 cut(s) 243
Cac8I GCNNGC 1 cut(s) 109
CfoI GCGC 2 cut(s) 41, 52
Cfr10I RCCGGY 1 cut(s) 292
Cfr13I GGNCC 2 cut(s) 110, 316
Cfr9I CCCGGG 1 cut(s) 169
CseI GACGC 1 cut(s) 132
Csp6I GTAC 3 cut(s) 304, 385, 457
CspAI ACCGGT 1 cut(s) 292
CviAII CATG 3 cut(s) 260, 359, 442
CviQI GTAC 3 cut(s) 304, 385, 457
DdeI CTNAG 2 cut(s) 235, 272
DpnI GATC 3 cut(s) 192, 258, 331
DpnII GATC 3 cut(s) 190, 256, 329
Eco130I CCWWGG 1 cut(s) 429
Eco147I AGGCCT 1 cut(s) 434
Eco47I GGWCC 1 cut(s) 316
Eco57I CTGAAG 1 cut(s) 135
Eco88I CYCGRG 1 cut(s) 169
EcoRII CCWGG 1 cut(s) 318
EcoT14I CCWWGG 1 cut(s) 429
ErhI CCWWGG 1 cut(s) 429
FaeI CATG 3 cut(s) 263, 362, 445
FalI AAGNNNNNCTT 2 cut(s) 108, 140
FatI CATG 3 cut(s) 259, 358, 441
FbaI TGATCA 1 cut(s) 256
Fnu4HI GCNGC 2 cut(s) 29, 69
FokI GGATG 1 cut(s) 335
Fsp4HI GCNGC 2 cut(s) 29, 69
FspBI CTAG 1 cut(s) 32
GlaI GCGC 2 cut(s) 40, 51
GluI GCNGC 2 cut(s) 29, 69
HaeII RGCGCY 1 cut(s) 53
HaeIII GGCC 2 cut(s) 111, 434
HapII CCGG 2 cut(s) 170, 293
HgaI GACGC 1 cut(s) 132
HhaI GCGC 2 cut(s) 41, 52
Hin1II CATG 3 cut(s) 263, 362, 445
Hin6I GCGC 2 cut(s) 39, 50
HinP1I GCGC 2 cut(s) 39, 50
HincII GTYRAC 1 cut(s) 370
HindII GTYRAC 1 cut(s) 370
HpaII CCGG 2 cut(s) 170, 293
HphI GGTGA 1 cut(s) 494
Hpy166II GTNNAC 1 cut(s) 370
Hpy188I TCNGA 2 cut(s) 136, 273
Hpy188III TCNNGA 2 cut(s) 314, 493
Hpy8I GTNNAC 1 cut(s) 370
HpyAV CCTTC 3 cut(s) 215, 259, 404
HpyCH4V TGCA 2 cut(s) 28, 473
HpyF10VI GCNNNNNNNGC 4 cut(s) 47, 58, 296, 470
HpyF3I CTNAG 2 cut(s) 235, 272
Hsp92II CATG 3 cut(s) 263, 362, 445
HspAI GCGC 2 cut(s) 39, 50
KpnI GGTACC 1 cut(s) 388
Ksp22I TGATCA 1 cut(s) 256
Kzo9I GATC 3 cut(s) 190, 256, 329
LmnI GCTCC 2 cut(s) 156, 181
Lsp1109I GCAGC 2 cut(s) 40, 80
LweI GCATC 2 cut(s) 50, 460
MaeI CTAG 1 cut(s) 32
MaeIII GTNAC 1 cut(s) 144
MalI GATC 3 cut(s) 192, 258, 331
MboI GATC 3 cut(s) 190, 256, 329
MboII GAAGA 1 cut(s) 123
MhlI GDGCHC 2 cut(s) 90, 178
MluCI AATT 1 cut(s) 349
MnlI CCTC 4 cut(s) 166, 267, 320, 407
MseI TTAA 1 cut(s) 63
MslI CAYNNNNRTG 1 cut(s) 446
MspI CCGG 2 cut(s) 170, 293
MspR9I CCNGG 3 cut(s) 170, 171, 320
MvaI CCWGG 1 cut(s) 320
MwoI GCNNNNNNNGC 4 cut(s) 47, 58, 296, 470
NciI CCSGG 2 cut(s) 170, 171
NdeII GATC 3 cut(s) 190, 256, 329
NlaIII CATG 3 cut(s) 263, 362, 445
NlaIV GGNNCC 2 cut(s) 291, 386
NmuCI GTSAC 1 cut(s) 144
PceI AGGCCT 1 cut(s) 434
PflFI GACNNNGTC 1 cut(s) 365
PinAI ACCGGT 1 cut(s) 292
PkrI GCNGC 2 cut(s) 30, 70
Psp6I CCWGG 1 cut(s) 318
PspGI CCWGG 1 cut(s) 318
PspN4I GGNNCC 2 cut(s) 291, 386
PspPI GGNCC 2 cut(s) 110, 316
PsyI GACNNNGTC 1 cut(s) 365
RsaI GTAC 3 cut(s) 305, 386, 458
RsaNI GTAC 3 cut(s) 304, 385, 457
RseI CAYNNNNRTG 1 cut(s) 446
SaqAI TTAA 1 cut(s) 63
SatI GCNGC 2 cut(s) 29, 69
Sau3AI GATC 3 cut(s) 190, 256, 329
Sau96I GGNCC 2 cut(s) 110, 316
ScaI AGTACT 1 cut(s) 305
ScrFI CCNGG 3 cut(s) 170, 171, 320
SduI GDGCHC 2 cut(s) 90, 178
SetI ASST 8 cut(s) 33, 109, 126, 153, 256, 270, 369, 383
SfaNI GCATC 2 cut(s) 50, 460
SfcI CTRYAG 1 cut(s) 180
SinI GGWCC 1 cut(s) 316
SmaI CCCGGG 1 cut(s) 171
SmiMI CAYNNNNRTG 1 cut(s) 446
Sse9I AATT 1 cut(s) 349
SseBI AGGCCT 1 cut(s) 434
SspMI CTAG 1 cut(s) 32
StuI AGGCCT 1 cut(s) 434
StyD4I CCNGG 3 cut(s) 168, 169, 318
StyI CCWWGG 1 cut(s) 429
TaqI TCGA 1 cut(s) 90
TasI AATT 1 cut(s) 349
TatI WGTACW 2 cut(s) 303, 456
Tru1I TTAA 1 cut(s) 63
Tru9I TTAA 1 cut(s) 63
TscAI CASTG 1 cut(s) 250
TseFI GTSAC 1 cut(s) 144
TseI GCWGC 2 cut(s) 28, 68
Tsp45I GTSAC 1 cut(s) 144
TspDTI ATGAA 3 cut(s) 117, 264, 298
TspMI CCCGGG 1 cut(s) 169
TspRI CASTG 1 cut(s) 250
Tth111I GACNNNGTC 1 cut(s) 365
VpaK11BI GGWCC 1 cut(s) 316
XapI RAATTY 1 cut(s) 349
XmaI CCCGGG 1 cut(s) 169
XspI CTAG 1 cut(s) 32
ZrmI AGTACT 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.