Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0004266

Physical Location & Seq

Genomic Coordinates Reverse (-)

12810170 .. 12811913

Gene Structure 1744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G134400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGAAGGAAAAACAGGTGACAAAAATGGCCACCAATGAAGAAGAGGAAATTCACTCCCAATATGCTATGCAATTAGCAAGCGCATCACTTGTGCCTATGGTGCTCAAAGCAGCCATAGAGCTTGGAGTGTTTGACATACTGCACAGAGCTGGCCCTGGAGCCCTGCTTTCAGCCACCCAAATAGCATCTCTGCTTCCCTCTAACAACAACCCAGGTGCCGATTTGGTTCTTGATCGTATGCTTCGCCTTCTGTCTGCTTACTCTGTTCTCGCTTGCTCTGTCACCTCACACCAAACTGATGGGGAGGCTCTCAGGCTTTATGGGCTGTCACCTGTCTCCAAATATTTCATCAAAAACCAAGATGGTGTGTCATTGGCACCTTTACTATATTTGTGCAATGACAAGGTCACCATAGATAGCTGGTTCCATTTGAAAGATGCAGTTTTGGAAGGAGGGCTTCCATTTAGCCAGGCCTATGGAATGAATGTGGTGGAGTACGTTGGGAAGGATGAAAGATTTCGGGGAGTGTTCAAGGACTCAATGAAAGAGTTCAACCCCATTTTTATGAAGAAGATTTTGGAGACTTATAAGGGTTTTGTAGGTCTAAAAACACTTGTAGATGTGGGTGGTGGTGATGGTACTATCCTTAACATGATAATCTCCATGTACCCTGCCATCAAGGGTTTCAACTATGATTTGCCTTCTGTTGTAGAAAAGTCTCCCTCCCATCCTGGTATAGAGCACATTGCAGGAGATATGTTCGTAAGGATTCCGAAAGGAGATGCCGTTTTCATGAAGTGGATGCTACATGGCTGGGATGACAAACATTGCTTGATGATACTGAAGAATTGCTATGAGGCCTTGCCAGACCATGGGAAAGTGATACTGGTGGATATGGTGGTACCAGAAGCCCCTGAAACTAGTCTTTCTGCTAGCAGTTTGTTTCAGTTTGATGTGTACCTGATGAACACTAATGCGATGGGAAAGGAGAGAACAGAGAAAGAATTAGAAAGTTTGGCAAAAGAAGCAGGGTTTTCAAACATTCGAGTTGCATGTTCTGCTTTTACTTTTTCAGTCGTTGAGCTGTTTAAAAACGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

367

Amino Acids

40.44

Weight (kDa)

5.64

Isoelectric Point (pI)

33.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33030 AT1G33030 AT1G33030
fragaria_vesca	FvH4_5g10440
malus_domestica	MD14G1140100.v1.1 MD14G1140300.v1.1 MD14G1140600.v1.1 MD14G1140900.v1.1
prunus_persica	Prupe.5G134400_v2.0.a1 Prupe.5G134400_v2.0.a1
pyrus_communis	pycom14g11580
rosa_chinensis	RchiOBHm_Chr7g0187771 RchiOBHm_Chr7g0187791
rosa_laevigata	RLG00000004756 RLG00000004757
rosa_multiflora	Rmu_sc0004483.1_g000030 Rmu_sc0004483.1_g000036
rosa_roxburghii	Rroxscaffold_3G00267080 Rroxscaffold_3G00267090
rosa_rugosa	Rorug06G0484100.1 Rorug06G0484200
rosa_samantha	Rh7AG089200 Rh7AG089400 Rh7BG091000 Rh7BG091100 Rh7CG090000 Rh7CG090100 Rh7CG090200 Rh7DG091600 Rh7DG091800
rosa_wichuraiana	Rw7G007700 Rw7G007710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	588
Acc65I	GGTACC	1 cut(s)	901
AccB1I	GGYRCC	3 cut(s)	215, 376, 901
AccB7I	CCANNNNNTGG	1 cut(s)	872
AcoI	YGGCCR	1 cut(s)	27
AcsI	RAATTY	1 cut(s)	48
AcuI	CTGAAG	1 cut(s)	863
AfaI	GTAC	5 cut(s)	497, 640, 668, 903, 959
AfiI	CCNNNNNNNGG	1 cut(s)	872
AflIII	ACRYGT	1 cut(s)	1095
AgsI	TTSAA	5 cut(s)	433, 532, 553, 688, 1038
AhlI	ACTAGT	1 cut(s)	920
AjnI	CCWGG	4 cut(s)	154, 211, 468, 730
AjuI	GAANNNNNNNTTGG	2 cut(s)	560, 592
AluBI	AGCT	4 cut(s)	121, 149, 420, 1084
AluI	AGCT	4 cut(s)	121, 149, 420, 1084
Alw21I	GWGCWC	2 cut(s)	105, 744
Alw26I	GTCTC	3 cut(s)	340, 575, 723
AoxI	GGCC	4 cut(s)	27, 151, 471, 858
ApeKI	GCWGC	1 cut(s)	110
ApoI	RAATTY	1 cut(s)	48
Asp700I	GAANNNNTTC	2 cut(s)	516, 548
Asp718I	GGTACC	1 cut(s)	901
AspLEI	GCGC	1 cut(s)	83
AspS9I	GGNCC	1 cut(s)	152
AsuHPI	GGTGA	5 cut(s)	28, 274, 321, 400, 644
AsuNHI	GCTAGC	1 cut(s)	932
BalI	TGGCCA	1 cut(s)	29
BanI	GGYRCC	3 cut(s)	215, 376, 901
BanII	GRGCYC	1 cut(s)	163
Bbv12I	GWGCWC	2 cut(s)	105, 744
BbvI	GCAGC	1 cut(s)	122
BccI	CCATC	6 cut(s)	293, 356, 629, 683, 735, 973
BceAI	ACGGC	1 cut(s)	770
BciT130I	CCWGG	4 cut(s)	156, 213, 470, 732
BcoDI	GTCTC	3 cut(s)	340, 575, 723
BcuI	ACTAGT	1 cut(s)	920
BfaI	CTAG	2 cut(s)	921, 933
BisI	GCNGC	1 cut(s)	111
BlsI	GCNGC	1 cut(s)	112
Bme1390I	CCNGG	4 cut(s)	156, 213, 470, 732
BmgT120I	GGNCC	1 cut(s)	152
BmiI	GGNNCC	5 cut(s)	160, 217, 378, 425, 903
BmrFI	CCNGG	4 cut(s)	156, 213, 470, 732
BmsI	GCATC	5 cut(s)	92, 194, 427, 772, 792
BmtI	GCTAGC	1 cut(s)	936
BpmI	CTGGAG	1 cut(s)	177
BsaJI	CCNNGG	3 cut(s)	154, 211, 871
BsaXI	ACNNNNNCTCC	2 cut(s)	771, 801
Bsc4I	CCNNNNNNNGG	1 cut(s)	872
Bse1I	ACTGG	1 cut(s)	891
Bse3DI	GCAATG	3 cut(s)	403, 744, 826
BseBI	CCWGG	4 cut(s)	156, 213, 470, 732
BseDI	CCNNGG	3 cut(s)	154, 211, 871
BseGI	GGATG	4 cut(s)	514, 727, 807, 823
BseLI	CCNNNNNNNGG	1 cut(s)	872
BseMI	GCAATG	3 cut(s)	403, 744, 826
BseMII	CTCAG	1 cut(s)	325
BseNI	ACTGG	1 cut(s)	891
BseXI	GCAGC	1 cut(s)	122
BseYI	CCCAGC	1 cut(s)	813
BsgI	GTGCAG	1 cut(s)	125
BshFI	GGCC	4 cut(s)	29, 153, 473, 860
BshNI	GGYRCC	3 cut(s)	215, 376, 901
BsiHKAI	GWGCWC	2 cut(s)	105, 744
BslI	CCNNNNNNNGG	1 cut(s)	872
BsmAI	GTCTC	3 cut(s)	340, 575, 723
BsnI	GGCC	4 cut(s)	29, 153, 473, 860
Bsp1286I	GDGCHC	3 cut(s)	105, 163, 744
Bsp143I	GATC	1 cut(s)	232
Bsp19I	CCATGG	1 cut(s)	871
BspANI	GGCC	4 cut(s)	29, 153, 473, 860
BspCNI	CTCAG	1 cut(s)	324
BspHI	TCATGA	1 cut(s)	792
BspLI	GGNNCC	5 cut(s)	160, 217, 378, 425, 903
BspOI	GCTAGC	1 cut(s)	936
BspT107I	GGYRCC	3 cut(s)	215, 376, 901
BsrDI	GCAATG	3 cut(s)	403, 744, 826
BsrI	ACTGG	1 cut(s)	891
BssECI	CCNNGG	3 cut(s)	154, 211, 871
BssMI	GATC	1 cut(s)	232
BssT1I	CCWWGG	1 cut(s)	871
Bst2UI	CCWGG	4 cut(s)	156, 213, 470, 732
Bst6I	CTCTTC	1 cut(s)	36
BstAPI	GCANNNNNTGC	1 cut(s)	1058
BstC8I	GCNNGC	4 cut(s)	79, 151, 274, 934
BstDEI	CTNAG	1 cut(s)	311
BstDSI	CCRYGG	1 cut(s)	871
BstEII	GGTNACC	1 cut(s)	406
BstF5I	GGATG	4 cut(s)	514, 727, 807, 823
BstHHI	GCGC	1 cut(s)	83
BstKTI	GATC	1 cut(s)	235
BstMAI	GTCTC	3 cut(s)	340, 575, 723
BstMBI	GATC	1 cut(s)	232
BstMWI	GCNNNNNNNGC	4 cut(s)	100, 322, 1025, 1058
BstNI	CCWGG	4 cut(s)	156, 213, 470, 732
BstNSI	RCATGY	1 cut(s)	1056
BstPI	GGTNACC	1 cut(s)	406
BstSCI	CCNGG	4 cut(s)	154, 211, 468, 730
BstV1I	GCAGC	1 cut(s)	122
BstXI	CCANNNNNNTGG	2 cut(s)	299, 476
BsuRI	GGCC	4 cut(s)	29, 153, 473, 860
BtgI	CCRYGG	1 cut(s)	871
BtgZI	GCGATG	1 cut(s)	992
BtsCI	GGATG	4 cut(s)	514, 727, 807, 823
Cac8I	GCNNGC	4 cut(s)	79, 151, 274, 934
CciI	TCATGA	1 cut(s)	792
CfoI	GCGC	1 cut(s)	83
Cfr13I	GGNCC	1 cut(s)	152
Csp6I	GTAC	5 cut(s)	496, 639, 667, 902, 958
CviAII	CATG	6 cut(s)	652, 664, 793, 809, 872, 1053
CviQI	GTAC	5 cut(s)	496, 639, 667, 902, 958
DdeI	CTNAG	1 cut(s)	311
DpnI	GATC	1 cut(s)	234
DpnII	GATC	1 cut(s)	232
DraI	TTTAAA	1 cut(s)	1090
EaeI	YGGCCR	1 cut(s)	27
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
Eco130I	CCWWGG	1 cut(s)	871
Eco147I	AGGCCT	2 cut(s)	473, 860
Eco24I	GRGCYC	1 cut(s)	163
Eco57I	CTGAAG	1 cut(s)	863
Eco91I	GGTNACC	1 cut(s)	406
EcoO65I	GGTNACC	1 cut(s)	406
EcoRII	CCWGG	4 cut(s)	154, 211, 468, 730
EcoT14I	CCWWGG	1 cut(s)	871
EcoT38I	GRGCYC	1 cut(s)	163
ErhI	CCWWGG	1 cut(s)	871
FaeI	CATG	6 cut(s)	655, 667, 796, 812, 875, 1056
FalI	AAGNNNNNCTT	2 cut(s)	441, 473
FatI	CATG	6 cut(s)	651, 663, 792, 808, 871, 1052
Fnu4HI	GCNGC	1 cut(s)	111
FokI	GGATG	4 cut(s)	521, 714, 814, 830
FriOI	GRGCYC	1 cut(s)	163
Fsp4HI	GCNGC	1 cut(s)	111
FspBI	CTAG	2 cut(s)	921, 933
GlaI	GCGC	1 cut(s)	82
GluI	GCNGC	1 cut(s)	111
GsaI	CCCAGC	1 cut(s)	817
GsuI	CTGGAG	1 cut(s)	177
HaeIII	GGCC	4 cut(s)	29, 153, 473, 860
HhaI	GCGC	1 cut(s)	83
Hin1II	CATG	6 cut(s)	655, 667, 796, 812, 875, 1056
Hin6I	GCGC	1 cut(s)	81
HinP1I	GCGC	1 cut(s)	81
HinfI	GANTC	2 cut(s)	536, 769
HphI	GGTGA	5 cut(s)	28, 274, 321, 400, 644
Hpy166II	GTNNAC	1 cut(s)	958
Hpy188I	TCNGA	1 cut(s)	774
Hpy188III	TCNNGA	2 cut(s)	230, 793
Hpy8I	GTNNAC	1 cut(s)	958
HpyAV	CCTTC	4 cut(s)	257, 443, 499, 711
HpyCH4IV	ACGT	2 cut(s)	498, 1095
HpyCH4V	TGCA	6 cut(s)	70, 142, 396, 440, 749, 1052
HpyF10VI	GCNNNNNNNGC	4 cut(s)	100, 322, 1025, 1058
HpyF3I	CTNAG	1 cut(s)	311
HpySE526I	ACGT	2 cut(s)	498, 1095
Hsp92II	CATG	6 cut(s)	655, 667, 796, 812, 875, 1056
HspAI	GCGC	1 cut(s)	81
KpnI	GGTACC	1 cut(s)	905
Kzo9I	GATC	1 cut(s)	232
LmnI	GCTCC	1 cut(s)	158
Lsp1109I	GCAGC	1 cut(s)	122
LweI	GCATC	5 cut(s)	92, 194, 427, 772, 792
MaeI	CTAG	2 cut(s)	921, 933
MaeII	ACGT	2 cut(s)	498, 1095
MaeIII	GTNAC	4 cut(s)	16, 280, 327, 406
MalI	GATC	1 cut(s)	234
MboI	GATC	1 cut(s)	232
MboII	GAAGA	5 cut(s)	50, 53, 580, 583, 856
MhlI	GDGCHC	3 cut(s)	105, 163, 744
MlsI	TGGCCA	1 cut(s)	29
MluCI	AATT	4 cut(s)	48, 71, 847, 1004
MluNI	TGGCCA	1 cut(s)	29
MlyI	GAGTC	1 cut(s)	530
MnlI	CCTC	7 cut(s)	37, 208, 295, 298, 446, 733, 850
Mox20I	TGGCCA	1 cut(s)	29
MroXI	GAANNNNTTC	2 cut(s)	516, 548
MscI	TGGCCA	1 cut(s)	29
MseI	TTAA	2 cut(s)	648, 1089
MslI	CAYNNNNRTG	1 cut(s)	563
Msp20I	TGGCCA	1 cut(s)	29
MspR9I	CCNGG	4 cut(s)	156, 213, 470, 732
MvaI	CCWGG	4 cut(s)	156, 213, 470, 732
MwoI	GCNNNNNNNGC	4 cut(s)	100, 322, 1025, 1058
NcoI	CCATGG	1 cut(s)	871
NdeII	GATC	1 cut(s)	232
NheI	GCTAGC	1 cut(s)	932
NlaIII	CATG	6 cut(s)	655, 667, 796, 812, 875, 1056
NlaIV	GGNNCC	5 cut(s)	160, 217, 378, 425, 903
NmuCI	GTSAC	4 cut(s)	16, 280, 327, 406
NspI	RCATGY	1 cut(s)	1056
PagI	TCATGA	1 cut(s)	792
PceI	AGGCCT	2 cut(s)	473, 860
PdmI	GAANNNNTTC	2 cut(s)	516, 548
PfeI	GAWTC	1 cut(s)	769
PflFI	GACNNNGTC	1 cut(s)	404
PflMI	CCANNNNNTGG	1 cut(s)	872
PkrI	GCNGC	1 cut(s)	112
PleI	GAGTC	1 cut(s)	530
PpsI	GAGTC	1 cut(s)	530
PsiI	TTATAA	1 cut(s)	588
Psp6I	CCWGG	4 cut(s)	154, 211, 468, 730
PspEI	GGTNACC	1 cut(s)	406
PspFI	CCCAGC	1 cut(s)	813
PspGI	CCWGG	4 cut(s)	154, 211, 468, 730
PspN4I	GGNNCC	5 cut(s)	160, 217, 378, 425, 903
PspPI	GGNCC	1 cut(s)	152
PsyI	GACNNNGTC	1 cut(s)	404
RsaI	GTAC	5 cut(s)	497, 640, 668, 903, 959
RsaNI	GTAC	5 cut(s)	496, 639, 667, 902, 958
RseI	CAYNNNNRTG	1 cut(s)	563
SaqAI	TTAA	2 cut(s)	648, 1089
SatI	GCNGC	1 cut(s)	111
Sau3AI	GATC	1 cut(s)	232
Sau96I	GGNCC	1 cut(s)	152
SchI	GAGTC	1 cut(s)	530
ScrFI	CCNGG	4 cut(s)	156, 213, 470, 732
SduI	GDGCHC	3 cut(s)	105, 163, 744
SfaNI	GCATC	5 cut(s)	92, 194, 427, 772, 792
SmiMI	CAYNNNNRTG	1 cut(s)	563
SpeI	ACTAGT	1 cut(s)	920
Sse9I	AATT	4 cut(s)	48, 71, 847, 1004
SseBI	AGGCCT	2 cut(s)	473, 860
SspI	AATATT	1 cut(s)	344
SspMI	CTAG	2 cut(s)	921, 933
StuI	AGGCCT	2 cut(s)	473, 860
StyD4I	CCNGG	4 cut(s)	154, 211, 468, 730
StyI	CCWWGG	1 cut(s)	871
TaiI	ACGT	2 cut(s)	501, 1098
TaqI	TCGA	1 cut(s)	1045
TasI	AATT	4 cut(s)	48, 71, 847, 1004
TfiI	GAWTC	1 cut(s)	769
Tru1I	TTAA	2 cut(s)	648, 1089
Tru9I	TTAA	2 cut(s)	648, 1089
TseFI	GTSAC	4 cut(s)	16, 280, 327, 406
TseI	GCWGC	1 cut(s)	110
Tsp45I	GTSAC	4 cut(s)	16, 280, 327, 406
Tth111I	GACNNNGTC	1 cut(s)	404
Van91I	CCANNNNNTGG	1 cut(s)	872
XapI	RAATTY	1 cut(s)	48
XceI	RCATGY	1 cut(s)	1056
XmnI	GAANNNNTTC	2 cut(s)	516, 548
XspI	CTAG	2 cut(s)	921, 933

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.