Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0004266

Physical Location & Seq

Genomic Coordinates Reverse (-)

7072051 .. 7074081

Gene Structure 2031 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G007710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGACAATCACTCCCAATATGCTATGCAGCTAGTAAGCGCATCATTAGCGCCTATGGTGCTTAAAGCAGCCATAGAACTTGGTGTGCTCGACATAATACACAGAGCTGGCCCTGGAGTTCAGCTTTCATCTTCTGAAATAGCGTCACAGCTCCCCTCTCACAACAACCCGGGTGCTCCTGTAGTGCTTGATCGTATGCTTCGCCTTCTGTCTGCTCACTCCATTCTCACTTGCTCAGTTTCCACTGATGAAGCTGATCATGTGAAGGTTCTGAGGCTTTATGGTTTGGCACCGGTTGCCAAGTACTTCATTCTGGACCAGGATGGAGGATCATTAGCAACTTTACTAAATTTTTGCCATGACAAGGTCAACACAGATAGCTGGTACCATTTGACAGATGTAGTTTTGGAAGGAGGAGTTCCATTTACCAAGGCCTATGGCATGAGTGTGGTGGAGTACAACGCAAAAGATGCAAGATATGGTGAAACATTCAGGAACTCAATGAAAGAGTTTAACCCTGTTTTTATGAAGGAAATCCTTGGGAGTTATAAGGGTTTTGAAGGTCTAGGTACACTCGTAGATGCGGGTGGTGGTGATGGTACTATCCTTAACATGATTGTCTCCAAGTACCCTACCATCAAGGGTATCAACTATGATTTGGCTGCTGTTATAGAAAAATCTCCCTCCTATCCTGGTATTGAGCATATTGCAGGGGATATCTTTGTAAGCATTCCGAAAGGAGATGCCATTTTCATGAAGGTCAATCTGTTAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

258

Amino Acids

27.89

Weight (kDa)

5.57

Isoelectric Point (pI)

37.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	9 - 104	3.6e-17	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	128 - 253	2.6e-32	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33030 AT1G33030 AT1G33030
fragaria_vesca	FvH4_5g10440
malus_domestica	MD14G1140100.v1.1 MD14G1140300.v1.1 MD14G1140600.v1.1 MD14G1140900.v1.1
prunus_persica	Prupe.5G134400_v2.0.a1 Prupe.5G134400_v2.0.a1
pyrus_communis	pycom14g11580
rosa_chinensis	RchiOBHm_Chr7g0187771 RchiOBHm_Chr7g0187791
rosa_laevigata	RLG00000004756 RLG00000004757
rosa_multiflora	Rmu_sc0004483.1_g000030 Rmu_sc0004483.1_g000036
rosa_roxburghii	Rroxscaffold_3G00267080 Rroxscaffold_3G00267090
rosa_rugosa	Rorug06G0484100.1 Rorug06G0484200
rosa_samantha	Rh7AG089200 Rh7AG089400 Rh7BG091000 Rh7BG091100 Rh7CG090000 Rh7CG090100 Rh7CG090200 Rh7DG091600 Rh7DG091800
rosa_wichuraiana	Rw7G007700 Rw7G007710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	549
Acc65I	GGTACC	1 cut(s)	384
AccB1I	GGYRCC	2 cut(s)	289, 384
AciI	CCGC	1 cut(s)	584
AclWI	GGATC	1 cut(s)	337
AcsI	RAATTY	1 cut(s)	349
AfaI	GTAC	6 cut(s)	305, 386, 458, 571, 601, 629
AfiI	CCNNNNNNNGG	1 cut(s)	364
AgeI	ACCGGT	1 cut(s)	292
AgsI	TTSAA	1 cut(s)	560
AjnI	CCWGG	3 cut(s)	112, 318, 691
AluBI	AGCT	6 cut(s)	31, 107, 124, 151, 254, 381
AluI	AGCT	6 cut(s)	31, 107, 124, 151, 254, 381
Alw21I	GWGCWC	2 cut(s)	90, 178
Alw26I	GTCTC	1 cut(s)	625
AlwI	GGATC	1 cut(s)	337
Ama87I	CYCGRG	1 cut(s)	169
AoxI	GGCC	2 cut(s)	109, 432
ApeKI	GCWGC	3 cut(s)	28, 68, 662
ApoI	RAATTY	1 cut(s)	349
AsiGI	ACCGGT	1 cut(s)	292
Asp718I	GGTACC	1 cut(s)	384
AspLEI	GCGC	2 cut(s)	41, 52
AspS9I	GGNCC	2 cut(s)	110, 316
AsuC2I	CCSGG	2 cut(s)	170, 171
AsuHPI	GGTGA	2 cut(s)	494, 605
AvaI	CYCGRG	1 cut(s)	169
AvaII	GGWCC	1 cut(s)	316
BaeI	ACNNNNGTAYC	2 cut(s)	561, 594
BanI	GGYRCC	2 cut(s)	289, 384
Bbv12I	GWGCWC	2 cut(s)	90, 178
BbvI	GCAGC	3 cut(s)	40, 80, 649
BccI	CCATC	3 cut(s)	317, 590, 644
BciT130I	CCWGG	3 cut(s)	114, 320, 693
BclI	TGATCA	1 cut(s)	256
BcnI	CCSGG	2 cut(s)	170, 171
BcoDI	GTCTC	1 cut(s)	625
BfaI	CTAG	3 cut(s)	32, 566, 775
BfmI	CTRYAG	1 cut(s)	180
BfoI	RGCGCY	1 cut(s)	53
BisI	GCNGC	3 cut(s)	29, 69, 663
BlsI	GCNGC	3 cut(s)	30, 70, 664
BmcAI	AGTACT	1 cut(s)	305
Bme1390I	CCNGG	5 cut(s)	114, 170, 171, 320, 693
Bme18I	GGWCC	1 cut(s)	316
BmeT110I	CYCGRG	1 cut(s)	169
BmgT120I	GGNCC	2 cut(s)	110, 316
BmiI	GGNNCC	2 cut(s)	291, 386
BmrFI	CCNGG	5 cut(s)	114, 170, 171, 320, 693
BmsI	GCATC	4 cut(s)	50, 460, 571, 733
BpmI	CTGGAG	1 cut(s)	135
BpuMI	CCSGG	2 cut(s)	170, 171
BsaJI	CCNNGG	4 cut(s)	112, 169, 429, 538
BsaWI	WCCGGW	1 cut(s)	292
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	1 cut(s)	364
Bse118I	RCCGGY	1 cut(s)	292
BseBI	CCWGG	3 cut(s)	114, 320, 693
BseDI	CCNNGG	4 cut(s)	112, 169, 429, 538
BseGI	GGATG	1 cut(s)	328
BseLI	CCNNNNNNNGG	1 cut(s)	364
BseMII	CTCAG	2 cut(s)	249, 263
BseRI	GAGGAG	1 cut(s)	429
BseXI	GCAGC	3 cut(s)	40, 80, 649
BshFI	GGCC	2 cut(s)	111, 434
BshNI	GGYRCC	2 cut(s)	289, 384
BshTI	ACCGGT	1 cut(s)	292
BsiHKAI	GWGCWC	2 cut(s)	90, 178
BsiHKCI	CYCGRG	1 cut(s)	169
BsiSI	CCGG	2 cut(s)	170, 293
BslI	CCNNNNNNNGG	1 cut(s)	364
BsmAI	GTCTC	1 cut(s)	625
BsmI	GAATGC	1 cut(s)	729
BsnI	GGCC	2 cut(s)	111, 434
BsoBI	CYCGRG	1 cut(s)	169
Bsp1286I	GDGCHC	2 cut(s)	90, 178
Bsp143I	GATC	3 cut(s)	190, 256, 329
BspACI	CCGC	1 cut(s)	584
BspANI	GGCC	2 cut(s)	111, 434
BspCNI	CTCAG	2 cut(s)	248, 264
BspHI	TCATGA	1 cut(s)	753
BspLI	GGNNCC	2 cut(s)	291, 386
BspPI	GGATC	1 cut(s)	337
BspT107I	GGYRCC	2 cut(s)	289, 384
BsrFI	RCCGGY	1 cut(s)	292
BssAI	RCCGGY	1 cut(s)	292
BssECI	CCNNGG	4 cut(s)	112, 169, 429, 538
BssMI	GATC	3 cut(s)	190, 256, 329
BssT1I	CCWWGG	2 cut(s)	429, 538
Bst2UI	CCWGG	3 cut(s)	114, 320, 693
BstAPI	GCANNNNNTGC	2 cut(s)	296, 470
BstC8I	GCNNGC	1 cut(s)	109
BstDEI	CTNAG	2 cut(s)	235, 272
BstF5I	GGATG	1 cut(s)	328
BstH2I	RGCGCY	1 cut(s)	53
BstHHI	GCGC	2 cut(s)	41, 52
BstKTI	GATC	3 cut(s)	193, 259, 332
BstMAI	GTCTC	1 cut(s)	625
BstMBI	GATC	3 cut(s)	190, 256, 329
BstMWI	GCNNNNNNNGC	4 cut(s)	47, 58, 296, 470
BstNI	CCWGG	3 cut(s)	114, 320, 693
BstSCI	CCNGG	5 cut(s)	112, 168, 169, 318, 691
BstSFI	CTRYAG	1 cut(s)	180
BstV1I	GCAGC	3 cut(s)	40, 80, 649
BsuRI	GGCC	2 cut(s)	111, 434
BtsCI	GGATG	1 cut(s)	328
BtsIMutI	CAGTG	1 cut(s)	243
Cac8I	GCNNGC	1 cut(s)	109
CciI	TCATGA	1 cut(s)	753
CfoI	GCGC	2 cut(s)	41, 52
Cfr10I	RCCGGY	1 cut(s)	292
Cfr13I	GGNCC	2 cut(s)	110, 316
Cfr9I	CCCGGG	1 cut(s)	169
CseI	GACGC	1 cut(s)	132
Csp6I	GTAC	6 cut(s)	304, 385, 457, 570, 600, 628
CspAI	ACCGGT	1 cut(s)	292
CviAII	CATG	5 cut(s)	260, 359, 442, 613, 754
CviQI	GTAC	6 cut(s)	304, 385, 457, 570, 600, 628
DdeI	CTNAG	2 cut(s)	235, 272
DpnI	GATC	3 cut(s)	192, 258, 331
DpnII	GATC	3 cut(s)	190, 256, 329
Eco130I	CCWWGG	2 cut(s)	429, 538
Eco147I	AGGCCT	1 cut(s)	434
Eco32I	GATATC	1 cut(s)	718
Eco47I	GGWCC	1 cut(s)	316
Eco88I	CYCGRG	1 cut(s)	169
EcoRII	CCWGG	3 cut(s)	112, 318, 691
EcoRV	GATATC	1 cut(s)	718
EcoT14I	CCWWGG	2 cut(s)	429, 538
ErhI	CCWWGG	2 cut(s)	429, 538
FaeI	CATG	5 cut(s)	263, 362, 445, 616, 757
FatI	CATG	5 cut(s)	259, 358, 441, 612, 753
FauI	CCCGC	1 cut(s)	577
FbaI	TGATCA	1 cut(s)	256
Fnu4HI	GCNGC	3 cut(s)	29, 69, 663
FokI	GGATG	1 cut(s)	335
Fsp4HI	GCNGC	3 cut(s)	29, 69, 663
FspBI	CTAG	3 cut(s)	32, 566, 775
GlaI	GCGC	2 cut(s)	40, 51
GluI	GCNGC	3 cut(s)	29, 69, 663
GsuI	CTGGAG	1 cut(s)	135
HaeII	RGCGCY	1 cut(s)	53
HaeIII	GGCC	2 cut(s)	111, 434
HapII	CCGG	2 cut(s)	170, 293
HgaI	GACGC	1 cut(s)	132
HhaI	GCGC	2 cut(s)	41, 52
Hin1II	CATG	5 cut(s)	263, 362, 445, 616, 757
Hin6I	GCGC	2 cut(s)	39, 50
HinP1I	GCGC	2 cut(s)	39, 50
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HpaII	CCGG	2 cut(s)	170, 293
HphI	GGTGA	2 cut(s)	494, 605
Hpy166II	GTNNAC	2 cut(s)	370, 572
Hpy188I	TCNGA	3 cut(s)	136, 273, 735
Hpy188III	TCNNGA	3 cut(s)	314, 493, 754
Hpy8I	GTNNAC	2 cut(s)	370, 572
HpyAV	CCTTC	6 cut(s)	215, 259, 404, 523, 554, 751
HpyCH4V	TGCA	3 cut(s)	28, 473, 710
HpyF10VI	GCNNNNNNNGC	4 cut(s)	47, 58, 296, 470
HpyF3I	CTNAG	2 cut(s)	235, 272
Hsp92II	CATG	5 cut(s)	263, 362, 445, 616, 757
HspAI	GCGC	2 cut(s)	39, 50
KpnI	GGTACC	1 cut(s)	388
Ksp22I	TGATCA	1 cut(s)	256
Kzo9I	GATC	3 cut(s)	190, 256, 329
LmnI	GCTCC	2 cut(s)	156, 181
Lsp1109I	GCAGC	3 cut(s)	40, 80, 649
LweI	GCATC	4 cut(s)	50, 460, 571, 733
MaeI	CTAG	3 cut(s)	32, 566, 775
MaeIII	GTNAC	1 cut(s)	144
MalI	GATC	3 cut(s)	192, 258, 331
MboI	GATC	3 cut(s)	190, 256, 329
MboII	GAAGA	1 cut(s)	123
MhlI	GDGCHC	2 cut(s)	90, 178
MluCI	AATT	1 cut(s)	349
MnlI	CCTC	5 cut(s)	166, 267, 320, 407, 694
MseI	TTAA	4 cut(s)	63, 513, 609, 770
MslI	CAYNNNNRTG	2 cut(s)	446, 752
MspI	CCGG	2 cut(s)	170, 293
MspR9I	CCNGG	5 cut(s)	114, 170, 171, 320, 693
Mva1269I	GAATGC	1 cut(s)	729
MvaI	CCWGG	3 cut(s)	114, 320, 693
MwoI	GCNNNNNNNGC	4 cut(s)	47, 58, 296, 470
NciI	CCSGG	2 cut(s)	170, 171
NdeII	GATC	3 cut(s)	190, 256, 329
NlaIII	CATG	5 cut(s)	263, 362, 445, 616, 757
NlaIV	GGNNCC	2 cut(s)	291, 386
NmuCI	GTSAC	1 cut(s)	144
PagI	TCATGA	1 cut(s)	753
PceI	AGGCCT	1 cut(s)	434
PctI	GAATGC	1 cut(s)	729
PflFI	GACNNNGTC	1 cut(s)	365
PinAI	ACCGGT	1 cut(s)	292
PkrI	GCNGC	3 cut(s)	30, 70, 664
PsiI	TTATAA	1 cut(s)	549
Psp6I	CCWGG	3 cut(s)	112, 318, 691
PspGI	CCWGG	3 cut(s)	112, 318, 691
PspN4I	GGNNCC	2 cut(s)	291, 386
PspPI	GGNCC	2 cut(s)	110, 316
PsyI	GACNNNGTC	1 cut(s)	365
RsaI	GTAC	6 cut(s)	305, 386, 458, 571, 601, 629
RsaNI	GTAC	6 cut(s)	304, 385, 457, 570, 600, 628
RseI	CAYNNNNRTG	2 cut(s)	446, 752
SaqAI	TTAA	4 cut(s)	63, 513, 609, 770
SatI	GCNGC	3 cut(s)	29, 69, 663
Sau3AI	GATC	3 cut(s)	190, 256, 329
Sau96I	GGNCC	2 cut(s)	110, 316
ScaI	AGTACT	1 cut(s)	305
ScrFI	CCNGG	5 cut(s)	114, 170, 171, 320, 693
SduI	GDGCHC	2 cut(s)	90, 178
SfaNI	GCATC	4 cut(s)	50, 460, 571, 733
SfcI	CTRYAG	1 cut(s)	180
SinI	GGWCC	1 cut(s)	316
SmaI	CCCGGG	1 cut(s)	171
SmiMI	CAYNNNNRTG	2 cut(s)	446, 752
Sse9I	AATT	1 cut(s)	349
SseBI	AGGCCT	1 cut(s)	434
SsiI	CCGC	1 cut(s)	584
SspMI	CTAG	3 cut(s)	32, 566, 775
StuI	AGGCCT	1 cut(s)	434
StyD4I	CCNGG	5 cut(s)	112, 168, 169, 318, 691
StyI	CCWWGG	2 cut(s)	429, 538
TaqI	TCGA	1 cut(s)	90
TasI	AATT	1 cut(s)	349
TatI	WGTACW	2 cut(s)	303, 456
Tru1I	TTAA	4 cut(s)	63, 513, 609, 770
Tru9I	TTAA	4 cut(s)	63, 513, 609, 770
TscAI	CASTG	1 cut(s)	250
TseFI	GTSAC	1 cut(s)	144
TseI	GCWGC	3 cut(s)	28, 68, 662
Tsp45I	GTSAC	1 cut(s)	144
TspDTI	ATGAA	7 cut(s)	117, 264, 298, 518, 542, 742, 770
TspMI	CCCGGG	1 cut(s)	169
TspRI	CASTG	1 cut(s)	250
Tth111I	GACNNNGTC	1 cut(s)	365
VpaK11BI	GGWCC	1 cut(s)	316
XapI	RAATTY	1 cut(s)	349
XmaI	CCCGGG	1 cut(s)	169
XspI	CTAG	3 cut(s)	32, 566, 775
ZrmI	AGTACT	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.