Rh7BG091000

caffeic acid

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0004266
Physical Location & Seq
Reverse (-)
6713898 .. 6714173
276 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG091000.1

Sequence Viewer

Length: 276 bp
ATGGATAGTCACTCCCAACATGCCATGCAGCTAGTAAGCGCATCACTGGTGCCTATGGTGCTTAAAGCAGCCATAGAACTTGGTGTGCTTGACATAATACATAGAGCTGGCCCTGGAGCTCTGCTTTCACCTTCCCAAATTGCGTCTCAGCTCTCTTCTCAGAACAACCCAGGTGCCCCTTTAGTGCTTGATCGTATGCTTCGCCTTCTGTCTGCCCACTCAGTTCTCACTTGCTCTGTTTCCGCCCACCAACCCAGGTGCCCCTTCAGTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dimerisation Methyltransf_2

Protein Analysis

91

Amino Acids

9.55

Weight (kDa)

7.92

Isoelectric Point (pI)

40.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimerisation PF08100 9 - 83 1.4e-15 O-methyltransferase dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 49, 173, 258
AciI CCGC 1 cut(s) 243
AcuI CTGAAG 1 cut(s) 250
AjnI CCWGG 3 cut(s) 112, 169, 254
AluBI AGCT 4 cut(s) 31, 107, 119, 151
AluI AGCT 4 cut(s) 31, 107, 119, 151
Alw21I GWGCWC 1 cut(s) 121
Alw26I GTCTC 1 cut(s) 150
AoxI GGCC 1 cut(s) 109
ApeKI GCWGC 2 cut(s) 28, 68
AspLEI GCGC 1 cut(s) 41
AspS9I GGNCC 1 cut(s) 110
AsuHPI GGTGA 1 cut(s) 120
BaeGI GKGCMC 2 cut(s) 178, 263
BanI GGYRCC 3 cut(s) 49, 173, 258
BanII GRGCYC 1 cut(s) 121
Bbv12I GWGCWC 1 cut(s) 121
BbvI GCAGC 2 cut(s) 40, 80
BciT130I CCWGG 3 cut(s) 114, 171, 256
BcoDI GTCTC 1 cut(s) 150
BfaI CTAG 1 cut(s) 32
BisI GCNGC 2 cut(s) 29, 69
BlsI GCNGC 2 cut(s) 30, 70
Bme1390I CCNGG 3 cut(s) 114, 171, 256
BmgT120I GGNCC 1 cut(s) 110
BmiI GGNNCC 3 cut(s) 51, 175, 260
BmrFI CCNGG 3 cut(s) 114, 171, 256
BmsI GCATC 1 cut(s) 50
BpmI CTGGAG 1 cut(s) 135
BsaJI CCNNGG 3 cut(s) 112, 169, 254
Bse1I ACTGG 1 cut(s) 51
BseBI CCWGG 3 cut(s) 114, 171, 256
BseDI CCNNGG 3 cut(s) 112, 169, 254
BseMII CTCAG 3 cut(s) 161, 173, 234
BseNI ACTGG 1 cut(s) 51
BseSI GKGCMC 2 cut(s) 178, 263
BseXI GCAGC 2 cut(s) 40, 80
BshFI GGCC 1 cut(s) 111
BshNI GGYRCC 3 cut(s) 49, 173, 258
BsiHKAI GWGCWC 1 cut(s) 121
BsmAI GTCTC 1 cut(s) 150
BsmBI CGTCTC 1 cut(s) 150
BsnI GGCC 1 cut(s) 111
Bsp1286I GDGCHC 3 cut(s) 121, 178, 263
Bsp143I GATC 1 cut(s) 190
BspACI CCGC 1 cut(s) 243
BspANI GGCC 1 cut(s) 111
BspCNI CTCAG 3 cut(s) 160, 172, 233
BspLI GGNNCC 3 cut(s) 51, 175, 260
BspT107I GGYRCC 3 cut(s) 49, 173, 258
BsrI ACTGG 1 cut(s) 51
BssECI CCNNGG 3 cut(s) 112, 169, 254
BssMI GATC 1 cut(s) 190
Bst2UI CCWGG 3 cut(s) 114, 171, 256
Bst6I CTCTTC 1 cut(s) 160
BstC8I GCNNGC 1 cut(s) 109
BstDEI CTNAG 3 cut(s) 147, 159, 220
BstHHI GCGC 1 cut(s) 41
BstKTI GATC 1 cut(s) 193
BstMAI GTCTC 1 cut(s) 150
BstMBI GATC 1 cut(s) 190
BstMWI GCNNNNNNNGC 1 cut(s) 58
BstNI CCWGG 3 cut(s) 114, 171, 256
BstNSI RCATGY 1 cut(s) 23
BstSCI CCNGG 3 cut(s) 112, 169, 254
BstSLI GKGCMC 2 cut(s) 178, 263
BstV1I GCAGC 2 cut(s) 40, 80
BsuRI GGCC 1 cut(s) 111
BtsIMutI CAGTG 2 cut(s) 44, 274
Cac8I GCNNGC 1 cut(s) 109
CfoI GCGC 1 cut(s) 41
Cfr13I GGNCC 1 cut(s) 110
CseI GACGC 1 cut(s) 132
CviAII CATG 2 cut(s) 20, 25
CviJI RGCY 6 cut(s) 31, 71, 107, 111, 119, 151
CviKI_1 RGCY 6 cut(s) 31, 71, 107, 111, 119, 151
DdeI CTNAG 3 cut(s) 147, 159, 220
DpnI GATC 1 cut(s) 192
DpnII GATC 1 cut(s) 190
Eam1104I CTCTTC 1 cut(s) 160
EarI CTCTTC 1 cut(s) 160
EciI GGCGGA 1 cut(s) 232
Ecl136II GAGCTC 1 cut(s) 119
Eco24I GRGCYC 1 cut(s) 121
Eco53kI GAGCTC 1 cut(s) 119
Eco57I CTGAAG 1 cut(s) 250
EcoICRI GAGCTC 1 cut(s) 119
EcoRII CCWGG 3 cut(s) 112, 169, 254
EcoT38I GRGCYC 1 cut(s) 121
Esp3I CGTCTC 1 cut(s) 150
FaeI CATG 2 cut(s) 23, 28
FaiI YATR 7 cut(s) 21, 26, 56, 74, 95, 102, 197
FatI CATG 2 cut(s) 19, 24
Fnu4HI GCNGC 2 cut(s) 29, 69
FriOI GRGCYC 1 cut(s) 121
Fsp4HI GCNGC 2 cut(s) 29, 69
FspBI CTAG 1 cut(s) 32
GlaI GCGC 1 cut(s) 40
GluI GCNGC 2 cut(s) 29, 69
GsuI CTGGAG 1 cut(s) 135
HaeIII GGCC 1 cut(s) 111
HgaI GACGC 1 cut(s) 132
HhaI GCGC 1 cut(s) 41
Hin1II CATG 2 cut(s) 23, 28
Hin6I GCGC 1 cut(s) 39
HinP1I GCGC 1 cut(s) 39
HphI GGTGA 1 cut(s) 120
Hpy188I TCNGA 1 cut(s) 162
HpyAV CCTTC 3 cut(s) 141, 215, 274
HpyCH4V TGCA 1 cut(s) 28
HpyF10VI GCNNNNNNNGC 1 cut(s) 58
HpyF3I CTNAG 3 cut(s) 147, 159, 220
Hsp92II CATG 2 cut(s) 23, 28
HspAI GCGC 1 cut(s) 39
Kzo9I GATC 1 cut(s) 190
LmnI GCTCC 1 cut(s) 116
LpnPI CCDG 8 cut(s) 32, 93, 99, 126, 156, 183, 241, 268
Lsp1109I GCAGC 2 cut(s) 40, 80
LweI GCATC 1 cut(s) 50
MaeI CTAG 1 cut(s) 32
MaeIII GTNAC 1 cut(s) 8
MalI GATC 1 cut(s) 192
MboI GATC 1 cut(s) 190
MboII GAAGA 1 cut(s) 147
MhlI GDGCHC 3 cut(s) 121, 178, 263
MluCI AATT 1 cut(s) 138
MseI TTAA 1 cut(s) 63
MspR9I CCNGG 3 cut(s) 114, 171, 256
MvaI CCWGG 3 cut(s) 114, 171, 256
MwoI GCNNNNNNNGC 1 cut(s) 58
NdeII GATC 1 cut(s) 190
NlaIII CATG 2 cut(s) 23, 28
NlaIV GGNNCC 3 cut(s) 51, 175, 260
NmuCI GTSAC 1 cut(s) 8
NspI RCATGY 1 cut(s) 23
PkrI GCNGC 2 cut(s) 30, 70
Psp124BI GAGCTC 1 cut(s) 121
Psp6I CCWGG 3 cut(s) 112, 169, 254
PspGI CCWGG 3 cut(s) 112, 169, 254
PspN4I GGNNCC 3 cut(s) 51, 175, 260
PspPI GGNCC 1 cut(s) 110
SacI GAGCTC 1 cut(s) 121
SaqAI TTAA 1 cut(s) 63
SatI GCNGC 2 cut(s) 29, 69
Sau3AI GATC 1 cut(s) 190
Sau96I GGNCC 1 cut(s) 110
ScrFI CCNGG 3 cut(s) 114, 171, 256
SduI GDGCHC 3 cut(s) 121, 178, 263
SetI ASST 7 cut(s) 33, 109, 121, 133, 153, 175, 260
SfaNI GCATC 1 cut(s) 50
Sse9I AATT 1 cut(s) 138
SsiI CCGC 1 cut(s) 243
SspMI CTAG 1 cut(s) 32
SstI GAGCTC 1 cut(s) 121
StyD4I CCNGG 3 cut(s) 112, 169, 254
TasI AATT 1 cut(s) 138
Tru1I TTAA 1 cut(s) 63
Tru9I TTAA 1 cut(s) 63
TscAI CASTG 2 cut(s) 51, 274
TseFI GTSAC 1 cut(s) 8
TseI GCWGC 2 cut(s) 28, 68
Tsp45I GTSAC 1 cut(s) 8
TspRI CASTG 2 cut(s) 51, 274
XceI RCATGY 1 cut(s) 23
XspI CTAG 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.