Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0004266

Physical Location & Seq

Genomic Coordinates Reverse (-)

6785370 .. 6786885

Gene Structure 1516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG089200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGATAGTCACTCCCAACATGCCATGCAGCTAGTAAGCGCATCACTGGTGCCTATGGTGCTTAAAGCAGCCATAGAACTTGGTGTGCTTGACATAATACATAGAGCTGGCCCTGGAGCTCTGCTTTCACCTTCCCAAATTGCGTCTCAGCTCCCTTCTCAGAACAACCCAGGTGCCTCTTTAGTGCTTGATCGTATGCTTCGCCTTCTGTCTGCCCACTCAGTTCTCACTTGCTCTGTTTCCGCCCACCAAGTTGATCATGTGGAGGTTTTGAGGCTTTATGGATTGGCCCCCGTTGCCAAGTATTTCATTCGGGATCAGGATGGAGCATCATTAGCAACTTTACTAAATTATTGCAATGATAAGGTCAACACAGATAGCTGGTACCATTTGGCAGATGCAGTTTTGGAAGGAGGAATTCCATTTACCAAGACCTATGGAATGGATGTGGTGGAGTATCTAGGGAAAGATGCCAGATGTGATGTGGGTGGTGGTGATGGTACTATCCTTAACATGATTGTCTCCAAGTACCCTACCATCAAGGGTATCAACTATGATTTAGCTTCTATTATAGAAAAGTCTCCCTCCTATCCTGGTATAGAGCATATTGCAGGAGATATGTTTGTAAGGATTCCGAAAGGAGATGCCATTTTCATGAAGTGGGTACTACACCTTTTCGATGACAAACATTGCTTGATGATACTAAAGAACTGCTATGAGGCCTTGCTAGACCATGGGAAAATGATGGTAGTAAATTTGGTTATACCAGAAGCCCCTGAAACTAGTCTTTCTGCTAAAAGCTTGTTTCAGTTTGATATGTTCCTGATGAACACCACTACAAGTGAAAGGGAGAGGACAGAGAAAGAATTCGAAAGTTTGGCAAAACAAGCAGGGTTTTACACCATTCGAGTGGCATGTTCTGCATTTAATTTTTCAGTGGTGGAGCTTTTCAAGAGCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

320

Amino Acids

35.25

Weight (kDa)

5.75

Isoelectric Point (pI)

31.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	9 - 105	2.1e-16	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	160 - 299	1.1e-41	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33030 AT1G33030 AT1G33030
fragaria_vesca	FvH4_5g10440
malus_domestica	MD14G1140100.v1.1 MD14G1140300.v1.1 MD14G1140600.v1.1 MD14G1140900.v1.1
prunus_persica	Prupe.5G134400_v2.0.a1 Prupe.5G134400_v2.0.a1
pyrus_communis	pycom14g11580
rosa_chinensis	RchiOBHm_Chr7g0187771 RchiOBHm_Chr7g0187791
rosa_laevigata	RLG00000004756 RLG00000004757
rosa_multiflora	Rmu_sc0004483.1_g000030 Rmu_sc0004483.1_g000036
rosa_roxburghii	Rroxscaffold_3G00267080 Rroxscaffold_3G00267090
rosa_rugosa	Rorug06G0484100.1 Rorug06G0484200
rosa_samantha	Rh7AG089200 Rh7AG089400 Rh7BG091000 Rh7BG091100 Rh7CG090000 Rh7CG090100 Rh7CG090200 Rh7DG091600 Rh7DG091800
rosa_wichuraiana	Rw7G007700 Rw7G007710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	384
AccB1I	GGYRCC	3 cut(s)	49, 173, 384
AciI	CCGC	1 cut(s)	243
AclWI	GGATC	1 cut(s)	324
AcsI	RAATTY	3 cut(s)	417, 754, 866
AfaI	GTAC	4 cut(s)	386, 502, 530, 666
AgsI	TTSAA	1 cut(s)	952
AhlI	ACTAGT	1 cut(s)	782
AjnI	CCWGG	3 cut(s)	112, 169, 592
AluBI	AGCT	8 cut(s)	31, 107, 119, 151, 381, 563, 801, 946
AluI	AGCT	8 cut(s)	31, 107, 119, 151, 381, 563, 801, 946
Alw21I	GWGCWC	1 cut(s)	121
Alw26I	GTCTC	3 cut(s)	150, 526, 585
AlwI	GGATC	1 cut(s)	324
AoxI	GGCC	3 cut(s)	109, 288, 720
ApeKI	GCWGC	2 cut(s)	28, 68
ApoI	RAATTY	3 cut(s)	417, 754, 866
Asp700I	GAANNNNTTC	1 cut(s)	866
Asp718I	GGTACC	1 cut(s)	384
AspLEI	GCGC	1 cut(s)	41
AspS9I	GGNCC	2 cut(s)	110, 289
AsuHPI	GGTGA	2 cut(s)	120, 506
AsuII	TTCGAA	1 cut(s)	870
BanI	GGYRCC	3 cut(s)	49, 173, 384
BanII	GRGCYC	1 cut(s)	121
Bbv12I	GWGCWC	1 cut(s)	121
BbvI	GCAGC	2 cut(s)	40, 80
BccI	CCATC	4 cut(s)	317, 491, 545, 739
BciT130I	CCWGG	3 cut(s)	114, 171, 594
BclI	TGATCA	1 cut(s)	256
BcoDI	GTCTC	3 cut(s)	150, 526, 585
BcuI	ACTAGT	1 cut(s)	782
BfaI	CTAG	4 cut(s)	32, 461, 728, 783
BisI	GCNGC	2 cut(s)	29, 69
BlsI	GCNGC	2 cut(s)	30, 70
Bme1390I	CCNGG	3 cut(s)	114, 171, 594
BmgT120I	GGNCC	2 cut(s)	110, 289
BmiI	GGNNCC	4 cut(s)	51, 175, 291, 386
BmrFI	CCNGG	3 cut(s)	114, 171, 594
BmsI	GCATC	5 cut(s)	50, 338, 388, 460, 634
BpmI	CTGGAG	1 cut(s)	135
Bpu14I	TTCGAA	1 cut(s)	870
BsaJI	CCNNGG	3 cut(s)	112, 169, 733
Bse1I	ACTGG	1 cut(s)	51
Bse3DI	GCAATG	2 cut(s)	364, 688
BseBI	CCWGG	3 cut(s)	114, 171, 594
BseDI	CCNNGG	3 cut(s)	112, 169, 733
BseGI	GGATG	2 cut(s)	328, 451
BseMI	GCAATG	2 cut(s)	364, 688
BseMII	CTCAG	3 cut(s)	161, 173, 234
BseNI	ACTGG	1 cut(s)	51
BseXI	GCAGC	2 cut(s)	40, 80
BshFI	GGCC	3 cut(s)	111, 290, 722
BshNI	GGYRCC	3 cut(s)	49, 173, 384
BsiHKAI	GWGCWC	1 cut(s)	121
BsmAI	GTCTC	3 cut(s)	150, 526, 585
BsmBI	CGTCTC	1 cut(s)	150
BsnI	GGCC	3 cut(s)	111, 290, 722
Bsp119I	TTCGAA	1 cut(s)	870
Bsp1286I	GDGCHC	1 cut(s)	121
Bsp143I	GATC	3 cut(s)	190, 256, 316
Bsp19I	CCATGG	1 cut(s)	733
BspACI	CCGC	1 cut(s)	243
BspANI	GGCC	3 cut(s)	111, 290, 722
BspCNI	CTCAG	3 cut(s)	160, 172, 233
BspHI	TCATGA	1 cut(s)	654
BspLI	GGNNCC	4 cut(s)	51, 175, 291, 386
BspPI	GGATC	1 cut(s)	324
BspT104I	TTCGAA	1 cut(s)	870
BspT107I	GGYRCC	3 cut(s)	49, 173, 384
BsrDI	GCAATG	2 cut(s)	364, 688
BsrI	ACTGG	1 cut(s)	51
BssECI	CCNNGG	3 cut(s)	112, 169, 733
BssMI	GATC	3 cut(s)	190, 256, 316
BssT1I	CCWWGG	1 cut(s)	733
Bst2UI	CCWGG	3 cut(s)	114, 171, 594
BstAPI	GCANNNNNTGC	1 cut(s)	920
BstBI	TTCGAA	1 cut(s)	870
BstC8I	GCNNGC	1 cut(s)	109
BstDEI	CTNAG	3 cut(s)	147, 159, 220
BstDSI	CCRYGG	1 cut(s)	733
BstF5I	GGATG	2 cut(s)	328, 451
BstHHI	GCGC	1 cut(s)	41
BstKTI	GATC	3 cut(s)	193, 259, 319
BstMAI	GTCTC	3 cut(s)	150, 526, 585
BstMBI	GATC	3 cut(s)	190, 256, 316
BstMWI	GCNNNNNNNGC	5 cut(s)	58, 296, 335, 887, 920
BstNI	CCWGG	3 cut(s)	114, 171, 594
BstNSI	RCATGY	3 cut(s)	23, 918, 961
BstSCI	CCNGG	3 cut(s)	112, 169, 592
BstV1I	GCAGC	2 cut(s)	40, 80
BstXI	CCANNNNNNTGG	1 cut(s)	910
BsuRI	GGCC	3 cut(s)	111, 290, 722
BtgI	CCRYGG	1 cut(s)	733
BtsCI	GGATG	2 cut(s)	328, 451
BtsIMutI	CAGTG	2 cut(s)	44, 942
Cac8I	GCNNGC	1 cut(s)	109
CciI	TCATGA	1 cut(s)	654
CfoI	GCGC	1 cut(s)	41
Cfr13I	GGNCC	2 cut(s)	110, 289
CseI	GACGC	1 cut(s)	132
Csp6I	GTAC	4 cut(s)	385, 501, 529, 665
CviAII	CATG	8 cut(s)	20, 25, 260, 514, 655, 734, 915, 958
CviQI	GTAC	4 cut(s)	385, 501, 529, 665
DdeI	CTNAG	3 cut(s)	147, 159, 220
DpnI	GATC	3 cut(s)	192, 258, 318
DpnII	GATC	3 cut(s)	190, 256, 316
EciI	GGCGGA	1 cut(s)	232
Ecl136II	GAGCTC	1 cut(s)	119
Eco130I	CCWWGG	1 cut(s)	733
Eco147I	AGGCCT	1 cut(s)	722
Eco24I	GRGCYC	1 cut(s)	121
Eco53kI	GAGCTC	1 cut(s)	119
EcoICRI	GAGCTC	1 cut(s)	119
EcoRI	GAATTC	2 cut(s)	417, 866
EcoRII	CCWGG	3 cut(s)	112, 169, 592
EcoT14I	CCWWGG	1 cut(s)	733
EcoT38I	GRGCYC	1 cut(s)	121
ErhI	CCWWGG	1 cut(s)	733
Esp3I	CGTCTC	1 cut(s)	150
FaeI	CATG	8 cut(s)	23, 28, 263, 517, 658, 737, 918, 961
FatI	CATG	8 cut(s)	19, 24, 259, 513, 654, 733, 914, 957
FbaI	TGATCA	1 cut(s)	256
Fnu4HI	GCNGC	2 cut(s)	29, 69
FokI	GGATG	2 cut(s)	335, 458
FriOI	GRGCYC	1 cut(s)	121
Fsp4HI	GCNGC	2 cut(s)	29, 69
FspBI	CTAG	4 cut(s)	32, 461, 728, 783
GlaI	GCGC	1 cut(s)	40
GluI	GCNGC	2 cut(s)	29, 69
GsuI	CTGGAG	1 cut(s)	135
HaeIII	GGCC	3 cut(s)	111, 290, 722
HgaI	GACGC	1 cut(s)	132
HhaI	GCGC	1 cut(s)	41
Hin1II	CATG	8 cut(s)	23, 28, 263, 517, 658, 737, 918, 961
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HindIII	AAGCTT	1 cut(s)	799
HinfI	GANTC	1 cut(s)	631
HphI	GGTGA	2 cut(s)	120, 506
Hpy166II	GTNNAC	1 cut(s)	370
Hpy188I	TCNGA	2 cut(s)	162, 636
Hpy188III	TCNNGA	5 cut(s)	314, 320, 655, 823, 952
Hpy8I	GTNNAC	1 cut(s)	370
HpyAV	CCTTC	4 cut(s)	141, 165, 215, 404
HpyCH4V	TGCA	5 cut(s)	28, 357, 401, 611, 923
HpyF10VI	GCNNNNNNNGC	5 cut(s)	58, 296, 335, 887, 920
HpyF3I	CTNAG	3 cut(s)	147, 159, 220
Hsp92II	CATG	8 cut(s)	23, 28, 263, 517, 658, 737, 918, 961
HspAI	GCGC	1 cut(s)	39
KpnI	GGTACC	1 cut(s)	388
Ksp22I	TGATCA	1 cut(s)	256
Kzo9I	GATC	3 cut(s)	190, 256, 316
LmnI	GCTCC	4 cut(s)	116, 156, 326, 943
Lsp1109I	GCAGC	2 cut(s)	40, 80
LweI	GCATC	5 cut(s)	50, 338, 388, 460, 634
MaeI	CTAG	4 cut(s)	32, 461, 728, 783
MaeIII	GTNAC	1 cut(s)	8
MalI	GATC	3 cut(s)	192, 258, 318
MboI	GATC	3 cut(s)	190, 256, 316
MhlI	GDGCHC	1 cut(s)	121
MluCI	AATT	6 cut(s)	138, 349, 417, 754, 866, 928
MnlI	CCTC	7 cut(s)	187, 259, 267, 407, 595, 712, 846
MroXI	GAANNNNTTC	1 cut(s)	866
MseI	TTAA	3 cut(s)	63, 510, 927
MslI	CAYNNNNRTG	2 cut(s)	653, 908
MspR9I	CCNGG	3 cut(s)	114, 171, 594
MvaI	CCWGG	3 cut(s)	114, 171, 594
MwoI	GCNNNNNNNGC	5 cut(s)	58, 296, 335, 887, 920
NcoI	CCATGG	1 cut(s)	733
NdeII	GATC	3 cut(s)	190, 256, 316
NlaIII	CATG	8 cut(s)	23, 28, 263, 517, 658, 737, 918, 961
NlaIV	GGNNCC	4 cut(s)	51, 175, 291, 386
NmuCI	GTSAC	1 cut(s)	8
NspI	RCATGY	3 cut(s)	23, 918, 961
NspV	TTCGAA	1 cut(s)	870
PagI	TCATGA	1 cut(s)	654
PceI	AGGCCT	1 cut(s)	722
PdmI	GAANNNNTTC	1 cut(s)	866
PfeI	GAWTC	1 cut(s)	631
PkrI	GCNGC	2 cut(s)	30, 70
Psp124BI	GAGCTC	1 cut(s)	121
Psp6I	CCWGG	3 cut(s)	112, 169, 592
PspGI	CCWGG	3 cut(s)	112, 169, 592
PspN4I	GGNNCC	4 cut(s)	51, 175, 291, 386
PspPI	GGNCC	2 cut(s)	110, 289
RsaI	GTAC	4 cut(s)	386, 502, 530, 666
RsaNI	GTAC	4 cut(s)	385, 501, 529, 665
RseI	CAYNNNNRTG	2 cut(s)	653, 908
SacI	GAGCTC	1 cut(s)	121
SaqAI	TTAA	3 cut(s)	63, 510, 927
SatI	GCNGC	2 cut(s)	29, 69
Sau3AI	GATC	3 cut(s)	190, 256, 316
Sau96I	GGNCC	2 cut(s)	110, 289
ScrFI	CCNGG	3 cut(s)	114, 171, 594
SduI	GDGCHC	1 cut(s)	121
SfaNI	GCATC	5 cut(s)	50, 338, 388, 460, 634
SfuI	TTCGAA	1 cut(s)	870
SmiMI	CAYNNNNRTG	2 cut(s)	653, 908
SpeI	ACTAGT	1 cut(s)	782
Sse9I	AATT	6 cut(s)	138, 349, 417, 754, 866, 928
SseBI	AGGCCT	1 cut(s)	722
SsiI	CCGC	1 cut(s)	243
SspMI	CTAG	4 cut(s)	32, 461, 728, 783
SstI	GAGCTC	1 cut(s)	121
StuI	AGGCCT	1 cut(s)	722
StyD4I	CCNGG	3 cut(s)	112, 169, 592
StyI	CCWWGG	1 cut(s)	733
TaqI	TCGA	3 cut(s)	678, 870, 907
TasI	AATT	6 cut(s)	138, 349, 417, 754, 866, 928
TfiI	GAWTC	1 cut(s)	631
Tru1I	TTAA	3 cut(s)	63, 510, 927
Tru9I	TTAA	3 cut(s)	63, 510, 927
TscAI	CASTG	2 cut(s)	51, 942
TseFI	GTSAC	1 cut(s)	8
TseI	GCWGC	2 cut(s)	28, 68
Tsp45I	GTSAC	1 cut(s)	8
TspDTI	ATGAA	4 cut(s)	298, 643, 671, 842
TspRI	CASTG	2 cut(s)	51, 942
XapI	RAATTY	3 cut(s)	417, 754, 866
XceI	RCATGY	3 cut(s)	23, 918, 961
XcmI	CCANNNNNNNNNTGG	1 cut(s)	481
XmnI	GAANNNNTTC	1 cut(s)	866
XspI	CTAG	4 cut(s)	32, 461, 728, 783

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.