Rh7CG090100

caffeic acid

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0004266
Physical Location & Seq
Reverse (-)
6771795 .. 6772663
869 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG090100.1

Sequence Viewer

Length: 537 bp
ATGAAGGAAATCCTTGGGAGTTATAAGGGTTTTGAAGGTCTAGGTACACTCGTAGATGCCGGTGGTGGTGATGGTACAATCCTTAACATGATTGTCTCCAAGTACCCTACCATCAAGGGTATCAACTATGATTTGGCTGCTGTTATAGAAAAATCTCCCTCCTATCCTGGTATTGAGCATATTGCAGGGGATATCTTTGTAAACATTCCGAAAGGAGATGCCATTTTCATGAAGTGGATACTACACCATTACGATGACAAAAGTTGCTTGACGATACTAAAAAACTGCTATGAGGCATTGCCAGACCATGGAAAAGTCATAGTGGTTGATATGGTGATACCGGAAGCCCCTGAAACTACTACTTCTGCAAAAAGCTTGTTTCAGTTTGATATGTTCATGATGAACATGAACACCAATGGAAATGAGAGAACAGAGAAAGAACTTAGAAGTTTAGCAAAACAAGCCGGGTTTTACACCATTCGAGTGGCATGTTCTGCATTTAACTTTTCGGTGGTGGAGATGTTCAAGAACATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dimerisation Methyltransf_2

Protein Analysis

178

Amino Acids

19.75

Weight (kDa)

5.55

Isoelectric Point (pI)

38.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_2 PF00891 2 - 157 1.4e-49 O-methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 24
AccB7I CCANNNNNTGG 1 cut(s) 308
AfaI GTAC 3 cut(s) 46, 76, 104
AfiI CCNNNNNNNGG 1 cut(s) 308
AflIII ACRYGT 1 cut(s) 531
AgsI TTSAA 2 cut(s) 35, 526
AjnI CCWGG 1 cut(s) 166
AluBI AGCT 1 cut(s) 375
AluI AGCT 1 cut(s) 375
Alw26I GTCTC 1 cut(s) 100
ApeKI GCWGC 1 cut(s) 137
AsuC2I CCSGG 1 cut(s) 466
AsuHPI GGTGA 2 cut(s) 80, 346
BaeI ACNNNNGTAYC 2 cut(s) 36, 69
BbvI GCAGC 1 cut(s) 124
BccI CCATC 2 cut(s) 65, 119
BciT130I CCWGG 1 cut(s) 168
BciVI GTATCC 1 cut(s) 231
BcnI CCSGG 1 cut(s) 466
BcoDI GTCTC 1 cut(s) 100
BfaI CTAG 1 cut(s) 41
BfuI GTATCC 1 cut(s) 231
BisI GCNGC 1 cut(s) 138
BlsI GCNGC 1 cut(s) 139
Bme1390I CCNGG 2 cut(s) 168, 466
BmrFI CCNGG 2 cut(s) 168, 466
BmsI GCATC 2 cut(s) 46, 208
BpuMI CCSGG 1 cut(s) 466
BsaJI CCNNGG 2 cut(s) 13, 307
BsaWI WCCGGW 1 cut(s) 340
Bsc4I CCNNNNNNNGG 1 cut(s) 308
Bse118I RCCGGY 1 cut(s) 59
Bse3DI GCAATG 1 cut(s) 296
BseBI CCWGG 1 cut(s) 168
BseDI CCNNGG 2 cut(s) 13, 307
BseLI CCNNNNNNNGG 1 cut(s) 308
BseMI GCAATG 1 cut(s) 296
BseXI GCAGC 1 cut(s) 124
BsiSI CCGG 3 cut(s) 60, 341, 465
BslI CCNNNNNNNGG 1 cut(s) 308
BsmAI GTCTC 1 cut(s) 100
Bsp19I CCATGG 1 cut(s) 307
BspHI TCATGA 2 cut(s) 228, 396
BsrDI GCAATG 1 cut(s) 296
BsrFI RCCGGY 1 cut(s) 59
BssAI RCCGGY 1 cut(s) 59
BssECI CCNNGG 2 cut(s) 13, 307
BssT1I CCWWGG 2 cut(s) 13, 307
Bst2UI CCWGG 1 cut(s) 168
BstAPI GCANNNNNTGC 1 cut(s) 494
BstDEI CTNAG 1 cut(s) 443
BstDSI CCRYGG 1 cut(s) 307
BstMAI GTCTC 1 cut(s) 100
BstMWI GCNNNNNNNGC 2 cut(s) 461, 494
BstNI CCWGG 1 cut(s) 168
BstNSI RCATGY 2 cut(s) 492, 535
BstSCI CCNGG 2 cut(s) 166, 464
BstV1I GCAGC 1 cut(s) 124
BstXI CCANNNNNNTGG 1 cut(s) 484
BsuI GTATCC 1 cut(s) 231
BtgI CCRYGG 1 cut(s) 307
CciI TCATGA 2 cut(s) 228, 396
Cfr10I RCCGGY 1 cut(s) 59
Csp6I GTAC 3 cut(s) 45, 75, 103
CviAII CATG 7 cut(s) 88, 229, 308, 397, 406, 489, 532
CviJI RGCY 4 cut(s) 137, 347, 375, 464
CviKI_1 RGCY 4 cut(s) 137, 347, 375, 464
CviQI GTAC 3 cut(s) 45, 75, 103
DdeI CTNAG 1 cut(s) 443
Eco130I CCWWGG 2 cut(s) 13, 307
Eco32I GATATC 1 cut(s) 193
EcoRII CCWGG 1 cut(s) 166
EcoRV GATATC 1 cut(s) 193
EcoT14I CCWWGG 2 cut(s) 13, 307
ErhI CCWWGG 2 cut(s) 13, 307
FaeI CATG 7 cut(s) 91, 232, 311, 400, 409, 492, 535
FatI CATG 7 cut(s) 87, 228, 307, 396, 405, 488, 531
Fnu4HI GCNGC 1 cut(s) 138
Fsp4HI GCNGC 1 cut(s) 138
FspBI CTAG 1 cut(s) 41
GluI GCNGC 1 cut(s) 138
HapII CCGG 3 cut(s) 60, 341, 465
Hin1II CATG 7 cut(s) 91, 232, 311, 400, 409, 492, 535
HindIII AAGCTT 1 cut(s) 373
HpaII CCGG 3 cut(s) 60, 341, 465
HphI GGTGA 2 cut(s) 80, 346
Hpy166II GTNNAC 2 cut(s) 47, 202
Hpy188I TCNGA 1 cut(s) 210
Hpy188III TCNNGA 3 cut(s) 229, 397, 526
Hpy8I GTNNAC 2 cut(s) 47, 202
HpyAV CCTTC 1 cut(s) 29
HpyCH4V TGCA 3 cut(s) 185, 368, 497
HpyF10VI GCNNNNNNNGC 2 cut(s) 461, 494
HpyF3I CTNAG 1 cut(s) 443
Hsp92II CATG 7 cut(s) 91, 232, 311, 400, 409, 492, 535
LpnPI CCDG 8 cut(s) 73, 153, 171, 180, 315, 354, 363, 478
Lsp1109I GCAGC 1 cut(s) 124
LweI GCATC 2 cut(s) 46, 208
MaeI CTAG 1 cut(s) 41
MnlI CCTC 2 cut(s) 169, 286
MseI TTAA 2 cut(s) 84, 501
MslI CAYNNNNRTG 3 cut(s) 227, 252, 482
MspI CCGG 3 cut(s) 60, 341, 465
MspR9I CCNGG 2 cut(s) 168, 466
MvaI CCWGG 1 cut(s) 168
MwoI GCNNNNNNNGC 2 cut(s) 461, 494
NciI CCSGG 1 cut(s) 466
NcoI CCATGG 1 cut(s) 307
NlaIII CATG 7 cut(s) 91, 232, 311, 400, 409, 492, 535
NspI RCATGY 2 cut(s) 492, 535
PagI TCATGA 2 cut(s) 228, 396
PciI ACATGT 1 cut(s) 531
PflMI CCANNNNNTGG 1 cut(s) 308
PkrI GCNGC 1 cut(s) 139
PscI ACATGT 1 cut(s) 531
PsiI TTATAA 1 cut(s) 24
Psp6I CCWGG 1 cut(s) 166
PspGI CCWGG 1 cut(s) 166
RsaI GTAC 3 cut(s) 46, 76, 104
RsaNI GTAC 3 cut(s) 45, 75, 103
RseI CAYNNNNRTG 3 cut(s) 227, 252, 482
SaqAI TTAA 2 cut(s) 84, 501
SatI GCNGC 1 cut(s) 138
ScrFI CCNGG 2 cut(s) 168, 466
SetI ASST 3 cut(s) 40, 46, 377
SfaNI GCATC 2 cut(s) 46, 208
SmiMI CAYNNNNRTG 3 cut(s) 227, 252, 482
SspMI CTAG 1 cut(s) 41
StyD4I CCNGG 2 cut(s) 166, 464
StyI CCWWGG 2 cut(s) 13, 307
TaqI TCGA 1 cut(s) 481
Tru1I TTAA 2 cut(s) 84, 501
Tru9I TTAA 2 cut(s) 84, 501
TseI GCWGC 1 cut(s) 137
TspDTI ATGAA 6 cut(s) 17, 217, 245, 385, 416, 422
Van91I CCANNNNNTGG 1 cut(s) 308
XceI RCATGY 2 cut(s) 492, 535
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.