Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0004266

Physical Location & Seq

Genomic Coordinates Reverse (-)

23109067 .. 23110664

Gene Structure 1598 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1140900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGTCCACCATTAATAGAGAAAAGGAAGTTGACTCCCAATATGCTATGCAATTGGCAAACGTATCAGCATTGCCTATGGTGCTTAAAGCAGCCACAGGGCTTGGTGTGCTTGACATTATCCACAGAGCTGGCGCCGGAGCCCTTTTTTTGCCTTCCCAAATAGCGTCTCAGCTTTTAACTCTCCACAATCTGGATGCCACGTCGGTTCTTGATGGCATGCTTCGCCTTCTTTCCGCTTACTCTGTTCTCACTTGCTCGACAATCCAAGCTAATGGGAAGGTTATTAGGGTTTATGGGTTGGCACCTGTCTCCAAGTACCATTTGAAAGATGCAGTTTTGGAAGGAGGACTCCCATTTAGCAAGGCCTATGGTATGAATGTGGTGGATTACATTGGTAGGGATGACAGACTTGGTGGTGTGTTCAAGGACTCAATGAAAGTGTTTAACCTCATTTTTAAGAAGGAGATTCTGGAGATTTATACGGGTTTTGAAGGTCTACGTACACTGGTAGATGTGGGTGGTGGCGACGGTACTATTCTTAACAGGATAATCCCCAAGCACCCTGCCATCAAGGGCATCAACTATGATTTGCCTTTGGTTGTCAAAAAGTCTCCCTTCTATCCTGCACATTGCAGGAGATATGTTTATAAGGATTCCGCCTTGCTAGACAACGGAAAAGTTATAGTGGTGGATATGGTGATACAAGAAGCCCCTAAAACAAGTCTTTCTGCTAAAAGTTTGTCTCTGTTTGATGTGTATCGAATGAATACCAATGTGTCGGGAAATGAGAGAATAGAGAGAGAATTACAAAGTTTGGCAAAAGCAGCAAGATTTTCAGAAATTCGGGTAGCTTGTATAAGTTTTACCTTTTCTGTCGTGAAACTGTTAAAGAATATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

300

Amino Acids

32.82

Weight (kDa)

9.34

Isoelectric Point (pI)

30.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	16 - 110	9e-14	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	106 - 207	2.8e-21	O-methyltransferase domain
Methyltransf_2	PF00891	219 - 279	8.6e-06	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33030 AT1G33030 AT1G33030
fragaria_vesca	FvH4_5g10440
malus_domestica	MD14G1140100.v1.1 MD14G1140300.v1.1 MD14G1140600.v1.1 MD14G1140900.v1.1
prunus_persica	Prupe.5G134400_v2.0.a1 Prupe.5G134400_v2.0.a1
pyrus_communis	pycom14g11580
rosa_chinensis	RchiOBHm_Chr7g0187771 RchiOBHm_Chr7g0187791
rosa_laevigata	RLG00000004756 RLG00000004757
rosa_multiflora	Rmu_sc0004483.1_g000030 Rmu_sc0004483.1_g000036
rosa_roxburghii	Rroxscaffold_3G00267080 Rroxscaffold_3G00267090
rosa_rugosa	Rorug06G0484100.1 Rorug06G0484200
rosa_samantha	Rh7AG089200 Rh7AG089400 Rh7BG091000 Rh7BG091100 Rh7CG090000 Rh7CG090100 Rh7CG090200 Rh7DG091600 Rh7DG091800
rosa_wichuraiana	Rw7G007700 Rw7G007710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	648
AccB1I	GGYRCC	2 cut(s)	131, 301
AccB7I	CCANNNNNTGG	1 cut(s)	190
AccI	GTMKAC	1 cut(s)	496
AciI	CCGC	2 cut(s)	234, 657
AcsI	RAATTY	1 cut(s)	840
AcyI	GRCGYC	1 cut(s)	132
AfaI	GTAC	3 cut(s)	317, 502, 532
AfiI	CCNNNNNNNGG	1 cut(s)	190
AgsI	TTSAA	3 cut(s)	325, 424, 491
AjiI	CACGTC	1 cut(s)	201
AluBI	AGCT	4 cut(s)	128, 172, 269, 851
AluI	AGCT	4 cut(s)	128, 172, 269, 851
Alw26I	GTCTC	4 cut(s)	171, 313, 615, 747
AoxI	GGCC	1 cut(s)	363
ApeKI	GCWGC	2 cut(s)	89, 824
ApoI	RAATTY	1 cut(s)	840
AseI	ATTAAT	1 cut(s)	12
AspLEI	GCGC	1 cut(s)	134
AsuHPI	GGTGA	1 cut(s)	709
BanI	GGYRCC	2 cut(s)	131, 301
BanII	GRGCYC	1 cut(s)	142
BbvI	GCAGC	2 cut(s)	101, 836
BccI	CCATC	2 cut(s)	206, 575
BcoDI	GTCTC	4 cut(s)	171, 313, 615, 747
BfaI	CTAG	1 cut(s)	665
BfoI	RGCGCY	1 cut(s)	135
BisI	GCNGC	2 cut(s)	90, 825
BlsI	GCNGC	2 cut(s)	91, 826
BmgBI	CACGTC	1 cut(s)	201
BmiI	GGNNCC	3 cut(s)	133, 139, 303
BmsI	GCATC	3 cut(s)	184, 319, 585
BpmI	CTGGAG	1 cut(s)	491
BsaAI	YACGTR	1 cut(s)	500
BsaBI	GATNNNNATC	1 cut(s)	756
BsaHI	GRCGYC	1 cut(s)	132
Bsc4I	CCNNNNNNNGG	1 cut(s)	190
Bse1I	ACTGG	1 cut(s)	510
Bse3DI	GCAATG	2 cut(s)	68, 628
Bse8I	GATNNNNATC	1 cut(s)	756
BseGI	GGATG	2 cut(s)	199, 406
BseJI	GATNNNNATC	1 cut(s)	756
BseLI	CCNNNNNNNGG	1 cut(s)	190
BseMI	GCAATG	2 cut(s)	68, 628
BseMII	CTCAG	1 cut(s)	182
BseNI	ACTGG	1 cut(s)	510
BseXI	GCAGC	2 cut(s)	101, 836
BsgI	GTGCAG	1 cut(s)	609
BshFI	GGCC	1 cut(s)	365
BshNI	GGYRCC	2 cut(s)	131, 301
BsiSI	CCGG	1 cut(s)	135
BslI	CCNNNNNNNGG	1 cut(s)	190
BsmAI	GTCTC	4 cut(s)	171, 313, 615, 747
BsmBI	CGTCTC	1 cut(s)	171
BsnI	GGCC	1 cut(s)	365
Bsp1286I	GDGCHC	1 cut(s)	142
BspACI	CCGC	2 cut(s)	234, 657
BspANI	GGCC	1 cut(s)	365
BspCNI	CTCAG	1 cut(s)	181
BspLI	GGNNCC	3 cut(s)	133, 139, 303
BspT107I	GGYRCC	2 cut(s)	131, 301
BsrDI	GCAATG	2 cut(s)	68, 628
BsrI	ACTGG	1 cut(s)	510
BssNI	GRCGYC	1 cut(s)	132
Bst4CI	ACNGT	2 cut(s)	530, 885
BstACI	GRCGYC	1 cut(s)	132
BstBAI	YACGTR	1 cut(s)	500
BstC8I	GCNNGC	2 cut(s)	130, 218
BstDEI	CTNAG	1 cut(s)	168
BstF5I	GGATG	2 cut(s)	199, 406
BstH2I	RGCGCY	1 cut(s)	135
BstHHI	GCGC	1 cut(s)	134
BstMAI	GTCTC	4 cut(s)	171, 313, 615, 747
BstMWI	GCNNNNNNNGC	4 cut(s)	79, 106, 222, 824
BstNSI	RCATGY	1 cut(s)	220
BstSNI	TACGTA	1 cut(s)	500
BstV1I	GCAGC	2 cut(s)	101, 836
BstXI	CCANNNNNNTGG	2 cut(s)	128, 272
BsuRI	GGCC	1 cut(s)	365
BtrI	CACGTC	1 cut(s)	201
BtsCI	GGATG	2 cut(s)	199, 406
BtsIMutI	CAGTG	1 cut(s)	503
Cac8I	GCNNGC	2 cut(s)	130, 218
CfoI	GCGC	1 cut(s)	134
CseI	GACGC	1 cut(s)	153
Csp6I	GTAC	3 cut(s)	316, 501, 531
CspCI	CAANNNNNGTGG	2 cut(s)	82, 117
CviAII	CATG	1 cut(s)	217
CviJI	RGCY	9 cut(s)	92, 100, 128, 140, 172, 269, 365, 710, 851
CviKI_1	RGCY	9 cut(s)	92, 100, 128, 140, 172, 269, 365, 710, 851
CviQI	GTAC	3 cut(s)	316, 501, 531
DdeI	CTNAG	1 cut(s)	168
DinI	GGCGCC	1 cut(s)	133
EciI	GGCGGA	1 cut(s)	646
Eco105I	TACGTA	1 cut(s)	500
Eco147I	AGGCCT	1 cut(s)	365
Eco24I	GRGCYC	1 cut(s)	142
EcoT38I	GRGCYC	1 cut(s)	142
EgeI	GGCGCC	1 cut(s)	133
EheI	GGCGCC	1 cut(s)	133
Esp3I	CGTCTC	1 cut(s)	171
FaeI	CATG	1 cut(s)	220
FalI	AAGNNNNNCTT	2 cut(s)	599, 631
FatI	CATG	1 cut(s)	216
FblI	GTMKAC	1 cut(s)	496
Fnu4HI	GCNGC	2 cut(s)	90, 825
FokI	GGATG	2 cut(s)	206, 413
FriOI	GRGCYC	1 cut(s)	142
Fsp4HI	GCNGC	2 cut(s)	90, 825
FspBI	CTAG	1 cut(s)	665
GlaI	GCGC	1 cut(s)	133
GluI	GCNGC	2 cut(s)	90, 825
GsuI	CTGGAG	1 cut(s)	491
HaeII	RGCGCY	1 cut(s)	135
HaeIII	GGCC	1 cut(s)	365
HapII	CCGG	1 cut(s)	135
HgaI	GACGC	1 cut(s)	153
HhaI	GCGC	1 cut(s)	134
Hin1I	GRCGYC	1 cut(s)	132
Hin1II	CATG	1 cut(s)	220
Hin6I	GCGC	1 cut(s)	132
HinP1I	GCGC	1 cut(s)	132
HincII	GTYRAC	1 cut(s)	31
HindII	GTYRAC	1 cut(s)	31
HinfI	GANTC	5 cut(s)	32, 348, 428, 466, 653
HpaII	CCGG	1 cut(s)	135
HphI	GGTGA	1 cut(s)	709
Hpy166II	GTNNAC	4 cut(s)	6, 31, 497, 503
Hpy188I	TCNGA	1 cut(s)	838
Hpy188III	TCNNGA	5 cut(s)	191, 209, 470, 780, 877
Hpy8I	GTNNAC	4 cut(s)	6, 31, 497, 503
Hpy99I	CGWCG	2 cut(s)	205, 530
HpyAV	CCTTC	7 cut(s)	162, 236, 271, 335, 454, 485, 625
HpyCH4III	ACNGT	2 cut(s)	530, 885
HpyCH4IV	ACGT	3 cut(s)	60, 200, 499
HpyCH4V	TGCA	4 cut(s)	49, 332, 626, 633
HpyF10VI	GCNNNNNNNGC	4 cut(s)	79, 106, 222, 824
HpyF3I	CTNAG	1 cut(s)	168
HpySE526I	ACGT	3 cut(s)	60, 200, 499
Hsp92I	GRCGYC	1 cut(s)	132
Hsp92II	CATG	1 cut(s)	220
HspAI	GCGC	1 cut(s)	132
KasI	GGCGCC	1 cut(s)	131
LmnI	GCTCC	1 cut(s)	137
Lsp1109I	GCAGC	2 cut(s)	101, 836
LweI	GCATC	3 cut(s)	184, 319, 585
MaeI	CTAG	1 cut(s)	665
MaeII	ACGT	3 cut(s)	60, 200, 499
MfeI	CAATTG	1 cut(s)	50
MhlI	GDGCHC	1 cut(s)	142
MluCI	AATT	3 cut(s)	50, 803, 840
Mly113I	GGCGCC	1 cut(s)	132
MlyI	GAGTC	3 cut(s)	26, 342, 422
MnlI	CCTC	2 cut(s)	338, 458
MseI	TTAA	7 cut(s)	12, 84, 176, 444, 456, 540, 887
MspI	CCGG	1 cut(s)	135
MunI	CAATTG	1 cut(s)	50
MwoI	GCNNNNNNNGC	4 cut(s)	79, 106, 222, 824
NarI	GGCGCC	1 cut(s)	132
NlaIII	CATG	1 cut(s)	220
NlaIV	GGNNCC	3 cut(s)	133, 139, 303
NspI	RCATGY	1 cut(s)	220
PaeI	GCATGC	1 cut(s)	220
PceI	AGGCCT	1 cut(s)	365
PfeI	GAWTC	2 cut(s)	466, 653
PflMI	CCANNNNNTGG	1 cut(s)	190
PkrI	GCNGC	2 cut(s)	91, 826
PleI	GAGTC	3 cut(s)	26, 342, 422
PluTI	GGCGCC	1 cut(s)	135
PpsI	GAGTC	3 cut(s)	26, 342, 422
Ppu21I	YACGTR	1 cut(s)	500
PshBI	ATTAAT	1 cut(s)	12
PsiI	TTATAA	1 cut(s)	648
PspN4I	GGNNCC	3 cut(s)	133, 139, 303
RsaI	GTAC	3 cut(s)	317, 502, 532
RsaNI	GTAC	3 cut(s)	316, 501, 531
SaqAI	TTAA	7 cut(s)	12, 84, 176, 444, 456, 540, 887
SatI	GCNGC	2 cut(s)	90, 825
SchI	GAGTC	3 cut(s)	26, 342, 422
SduI	GDGCHC	1 cut(s)	142
SfaNI	GCATC	3 cut(s)	184, 319, 585
SfoI	GGCGCC	1 cut(s)	133
SnaBI	TACGTA	1 cut(s)	500
SphI	GCATGC	1 cut(s)	220
Sse9I	AATT	3 cut(s)	50, 803, 840
SseBI	AGGCCT	1 cut(s)	365
SsiI	CCGC	2 cut(s)	234, 657
SspDI	GGCGCC	1 cut(s)	131
SspMI	CTAG	1 cut(s)	665
StuI	AGGCCT	1 cut(s)	365
TaaI	ACNGT	2 cut(s)	530, 885
TaiI	ACGT	3 cut(s)	63, 203, 502
TaqI	TCGA	2 cut(s)	257, 760
TasI	AATT	3 cut(s)	50, 803, 840
TfiI	GAWTC	2 cut(s)	466, 653
Tru1I	TTAA	7 cut(s)	12, 84, 176, 444, 456, 540, 887
Tru9I	TTAA	7 cut(s)	12, 84, 176, 444, 456, 540, 887
TscAI	CASTG	1 cut(s)	510
TseI	GCWGC	2 cut(s)	89, 824
TspDTI	ATGAA	3 cut(s)	389, 449, 779
TspGWI	ACGGA	1 cut(s)	687
TspRI	CASTG	1 cut(s)	510
Van91I	CCANNNNNTGG	1 cut(s)	190
VspI	ATTAAT	1 cut(s)	12
XapI	RAATTY	1 cut(s)	840
XceI	RCATGY	1 cut(s)	220
XmiI	GTMKAC	1 cut(s)	496
XspI	CTAG	1 cut(s)	665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.