Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0004266

Physical Location & Seq

Genomic Coordinates Reverse (-)

14650077 .. 14651648

Gene Structure 1572 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g11580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGGAGAAGAGGAAGCTGACTCCCAATATGCTTTGCAATTGGCAAACGTATCAGTATTGCCTATGGTGCTTAAAGCAGCTTGGTGTGCTTGACATTATCCACAAAGCTGGCACGGGAGCCCTGCTTTCGCCTTGCCAAATAGCGTCTCAGCTTCGATCTCTCCACAATCCGGAAGCCCCTTCAGTTCTTGATCGCATGTTTCGCCTTCTTGCTGCTTACTCTATTCTCACTTGCTCGACAATCCAAGCTAATGGGAAGGTTATTAGGGCTTATGGGTTGGCACCTGTCTCCAAATACTTTATTAAGAACCAGGATGGTGCGTCTCTGGCACCATTACTCAATTTGTGCCATGACAAGGTCATCCTATATAGCTGTGCAGCCATCTTCATATGTCACCATTCCTGCAGGTACCATTTGAAAGATGCAGTTTTGGAAGGACTCCCATTTAGCCAGGCCTATGGAATGAATGTGGTGGATTACATTGGTAGGGATGACAGACTTGGAGTGTTTCAGGACTCAATGAAAGAGTTTAACCTCATTTTTATTAAGGAGATTCTTAAGATTTACACGGGTTTCGAAGGTCTAAGTACACTGGTAGATGTGGGTGGTGGCGACGGTACTATTCTTAACATGATAATCTGCAAGCACCCTGTCATCAAGGGCATCAACTATGATTTGCCTTCAGTTGTTGAAAAGTCTCCCTCCCATCCCAGTATAGAGCACATTACAGCAGATATGTTTGTGAGGATTCCGAAAAGCGATGCCATTTTCATGAAGGTGAGGTTTCTGAGAATTATTCGACTGCTTATTTACAAAGCAAGTTCAAAAGCAAACATCTACTTCGGGATACTACACGGTTGGGATGACGATCGATGCTTGATGATACTGAAGAATTGCTATGAGGCCTTGCCAAACAACGGAAAAGTGATAGTGGTGGATATGGTGATACAAGAAGCCCCTGAAACAACTCTTTCTGCTAAAAGTTTGTTTCTGTTTGATGTGTGCCTAATGAATACCAATGTGATGGGAAAGGAGAGAACAGAGAGAGAATTACAAAGTTTGGCAAAAGCGGCAGGATTTTCAGACATTCGAGTTGCTTGTTCCGCTTTTACCTTTTCCATCGTGGAACTGTTAAAGAATATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

382

Amino Acids

42.71

Weight (kDa)

8.56

Isoelectric Point (pI)

35.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	20 - 102	1.1e-11	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	137 - 259	3.2e-27	O-methyltransferase domain
Methyltransf_2	PF00891	282 - 361	7.5e-19	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33030 AT1G33030 AT1G33030
fragaria_vesca	FvH4_5g10440
malus_domestica	MD14G1140100.v1.1 MD14G1140300.v1.1 MD14G1140600.v1.1 MD14G1140900.v1.1
prunus_persica	Prupe.5G134400_v2.0.a1 Prupe.5G134400_v2.0.a1
pyrus_communis	pycom14g11580
rosa_chinensis	RchiOBHm_Chr7g0187771 RchiOBHm_Chr7g0187791
rosa_laevigata	RLG00000004756 RLG00000004757
rosa_multiflora	Rmu_sc0004483.1_g000030 Rmu_sc0004483.1_g000036
rosa_roxburghii	Rroxscaffold_3G00267080 Rroxscaffold_3G00267090
rosa_rugosa	Rorug06G0484100.1 Rorug06G0484200
rosa_samantha	Rh7AG089200 Rh7AG089400 Rh7BG091000 Rh7BG091100 Rh7CG090000 Rh7CG090100 Rh7CG090200 Rh7DG091600 Rh7DG091800
rosa_wichuraiana	Rw7G007700 Rw7G007710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	396
Acc65I	GGTACC	1 cut(s)	408
AccB1I	GGYRCC	3 cut(s)	280, 328, 408
AccIII	TCCGGA	1 cut(s)	169
AciI	CCGC	2 cut(s)	1070, 1104
AcuI	CTGAAG	3 cut(s)	165, 666, 908
AfaI	GTAC	3 cut(s)	410, 589, 619
AfiI	CCNNNNNNNGG	3 cut(s)	169, 355, 917
AflII	CTTAAG	1 cut(s)	557
AgsI	TTSAA	3 cut(s)	418, 692, 825
AjnI	CCWGG	2 cut(s)	309, 450
AluBI	AGCT	6 cut(s)	16, 79, 107, 151, 248, 372
AluI	AGCT	6 cut(s)	16, 79, 107, 151, 248, 372
Alw21I	GWGCWC	1 cut(s)	723
Alw26I	GTCTC	4 cut(s)	150, 292, 327, 702
Aor13HI	TCCGGA	1 cut(s)	169
AoxI	GGCC	2 cut(s)	453, 903
ApeKI	GCWGC	3 cut(s)	76, 212, 377
Asp718I	GGTACC	1 cut(s)	408
AsuHPI	GGTGA	3 cut(s)	386, 790, 955
AsuII	TTCGAA	1 cut(s)	576
BanI	GGYRCC	3 cut(s)	280, 328, 408
BanII	GRGCYC	1 cut(s)	121
Bbv12I	GWGCWC	1 cut(s)	723
BbvI	GCAGC	3 cut(s)	88, 199, 389
BccI	CCATC	5 cut(s)	308, 389, 714, 1018, 1127
BciT130I	CCWGG	2 cut(s)	311, 452
BciVI	GTATCC	1 cut(s)	840
BcoDI	GTCTC	4 cut(s)	150, 292, 327, 702
BfmI	CTRYAG	1 cut(s)	403
BfrI	CTTAAG	1 cut(s)	557
BfuAI	ACCTGC	1 cut(s)	396
BfuI	GTATCC	1 cut(s)	840
BisI	GCNGC	4 cut(s)	77, 213, 378, 1071
BlsI	GCNGC	4 cut(s)	78, 214, 379, 1072
Bme1390I	CCNGG	2 cut(s)	311, 452
BmiI	GGNNCC	4 cut(s)	118, 282, 330, 410
BmrFI	CCNGG	2 cut(s)	311, 452
BmrI	ACTGGG	1 cut(s)	705
BmsI	GCATC	4 cut(s)	412, 672, 751, 863
BmuI	ACTGGG	1 cut(s)	705
Bpu14I	TTCGAA	1 cut(s)	576
Bsa29I	ATCGAT	1 cut(s)	871
BsaBI	GATNNNNATC	1 cut(s)	867
BsaWI	WCCGGW	1 cut(s)	169
Bsc4I	CCNNNNNNNGG	3 cut(s)	169, 355, 917
Bse1I	ACTGG	2 cut(s)	597, 711
Bse8I	GATNNNNATC	1 cut(s)	867
BseAI	TCCGGA	1 cut(s)	169
BseBI	CCWGG	2 cut(s)	311, 452
BseCI	ATCGAT	1 cut(s)	871
BseGI	GGATG	5 cut(s)	319, 360, 496, 706, 868
BseJI	GATNNNNATC	1 cut(s)	867
BseLI	CCNNNNNNNGG	3 cut(s)	169, 355, 917
BseMII	CTCAG	2 cut(s)	161, 779
BseNI	ACTGG	2 cut(s)	597, 711
BseXI	GCAGC	3 cut(s)	88, 199, 389
BsgI	GTGCAG	1 cut(s)	396
Bsh1285I	CGRYCG	1 cut(s)	871
BshFI	GGCC	2 cut(s)	455, 905
BshNI	GGYRCC	3 cut(s)	280, 328, 408
BshVI	ATCGAT	1 cut(s)	871
BsiEI	CGRYCG	1 cut(s)	871
BsiHKAI	GWGCWC	1 cut(s)	723
BsiSI	CCGG	1 cut(s)	170
BslI	CCNNNNNNNGG	3 cut(s)	169, 355, 917
BsmAI	GTCTC	4 cut(s)	150, 292, 327, 702
BsmBI	CGTCTC	2 cut(s)	150, 327
BsnI	GGCC	2 cut(s)	455, 905
Bsp119I	TTCGAA	1 cut(s)	576
Bsp1286I	GDGCHC	2 cut(s)	121, 723
Bsp13I	TCCGGA	1 cut(s)	169
Bsp143I	GATC	3 cut(s)	155, 190, 868
BspACI	CCGC	2 cut(s)	1070, 1104
BspANI	GGCC	2 cut(s)	455, 905
BspCNI	CTCAG	2 cut(s)	160, 780
BspDI	ATCGAT	1 cut(s)	871
BspEI	TCCGGA	1 cut(s)	169
BspHI	TCATGA	1 cut(s)	771
BspLI	GGNNCC	4 cut(s)	118, 282, 330, 410
BspMAI	CTGCAG	1 cut(s)	407
BspMI	ACCTGC	1 cut(s)	396
BspT104I	TTCGAA	1 cut(s)	576
BspT107I	GGYRCC	3 cut(s)	280, 328, 408
BspTI	CTTAAG	1 cut(s)	557
BsrI	ACTGG	2 cut(s)	597, 711
BssMI	GATC	3 cut(s)	155, 190, 868
Bst2UI	CCWGG	2 cut(s)	311, 452
Bst4CI	ACNGT	3 cut(s)	617, 857, 1131
Bst6I	CTCTTC	1 cut(s)	2
BstAFI	CTTAAG	1 cut(s)	557
BstBI	TTCGAA	1 cut(s)	576
BstC8I	GCNNGC	2 cut(s)	109, 644
BstDEI	CTNAG	3 cut(s)	147, 584, 788
BstF5I	GGATG	5 cut(s)	319, 360, 496, 706, 868
BstKTI	GATC	3 cut(s)	158, 193, 871
BstMAI	GTCTC	4 cut(s)	150, 292, 327, 702
BstMBI	GATC	3 cut(s)	155, 190, 868
BstMCI	CGRYCG	1 cut(s)	871
BstMWI	GCNNNNNNNGC	6 cut(s)	66, 85, 201, 326, 1070, 1103
BstNI	CCWGG	2 cut(s)	311, 452
BstNSI	RCATGY	1 cut(s)	199
BstSCI	CCNGG	2 cut(s)	309, 450
BstSFI	CTRYAG	1 cut(s)	403
BstV1I	GCAGC	3 cut(s)	88, 199, 389
BstXI	CCANNNNNNTGG	4 cut(s)	107, 251, 458, 1024
Bsu15I	ATCGAT	1 cut(s)	871
BsuI	GTATCC	1 cut(s)	840
BsuRI	GGCC	2 cut(s)	455, 905
BsuTUI	ATCGAT	1 cut(s)	871
BtgZI	GCGATG	1 cut(s)	774
BtsCI	GGATG	5 cut(s)	319, 360, 496, 706, 868
BtsIMutI	CAGTG	1 cut(s)	590
BveI	ACCTGC	1 cut(s)	396
Cac8I	GCNNGC	2 cut(s)	109, 644
CciI	TCATGA	1 cut(s)	771
ClaI	ATCGAT	1 cut(s)	871
CseI	GACGC	2 cut(s)	132, 309
Csp6I	GTAC	3 cut(s)	409, 588, 618
CviAII	CATG	4 cut(s)	196, 350, 631, 772
CviQI	GTAC	3 cut(s)	409, 588, 618
DdeI	CTNAG	3 cut(s)	147, 584, 788
DpnI	GATC	3 cut(s)	157, 192, 870
DpnII	GATC	3 cut(s)	155, 190, 868
Eam1104I	CTCTTC	1 cut(s)	2
EarI	CTCTTC	1 cut(s)	2
Eco147I	AGGCCT	2 cut(s)	455, 905
Eco24I	GRGCYC	1 cut(s)	121
Eco57I	CTGAAG	3 cut(s)	165, 666, 908
EcoRII	CCWGG	2 cut(s)	309, 450
EcoT38I	GRGCYC	1 cut(s)	121
Esp3I	CGTCTC	2 cut(s)	150, 327
FaeI	CATG	4 cut(s)	199, 353, 634, 775
FatI	CATG	4 cut(s)	195, 349, 630, 771
FauNDI	CATATG	1 cut(s)	389
Fnu4HI	GCNGC	4 cut(s)	77, 213, 378, 1071
FokI	GGATG	5 cut(s)	326, 347, 503, 693, 875
FriOI	GRGCYC	1 cut(s)	121
Fsp4HI	GCNGC	4 cut(s)	77, 213, 378, 1071
GluI	GCNGC	4 cut(s)	77, 213, 378, 1071
HaeIII	GGCC	2 cut(s)	455, 905
HapII	CCGG	1 cut(s)	170
HgaI	GACGC	2 cut(s)	132, 309
Hin1II	CATG	4 cut(s)	199, 353, 634, 775
HinfI	GANTC	5 cut(s)	19, 438, 515, 553, 748
HpaII	CCGG	1 cut(s)	170
HphI	GGTGA	3 cut(s)	386, 790, 955
Hpy166II	GTNNAC	1 cut(s)	590
Hpy188I	TCNGA	3 cut(s)	753, 789, 1084
Hpy188III	TCNNGA	5 cut(s)	170, 188, 512, 772, 844
Hpy8I	GTNNAC	1 cut(s)	590
Hpy99I	CGWCG	1 cut(s)	617
HpyAV	CCTTC	7 cut(s)	189, 215, 250, 428, 572, 690, 769
HpyCH4III	ACNGT	3 cut(s)	617, 857, 1131
HpyCH4IV	ACGT	1 cut(s)	47
HpyCH4V	TGCA	5 cut(s)	36, 377, 405, 425, 642
HpyF10VI	GCNNNNNNNGC	6 cut(s)	66, 85, 201, 326, 1070, 1103
HpyF3I	CTNAG	3 cut(s)	147, 584, 788
HpySE526I	ACGT	1 cut(s)	47
Hsp92II	CATG	4 cut(s)	199, 353, 634, 775
Kpn2I	TCCGGA	1 cut(s)	169
KpnI	GGTACC	1 cut(s)	412
Kzo9I	GATC	3 cut(s)	155, 190, 868
LmnI	GCTCC	1 cut(s)	116
Lsp1109I	GCAGC	3 cut(s)	88, 199, 389
LweI	GCATC	4 cut(s)	412, 672, 751, 863
MaeII	ACGT	1 cut(s)	47
MaeIII	GTNAC	1 cut(s)	392
MalI	GATC	3 cut(s)	157, 192, 870
MboI	GATC	3 cut(s)	155, 190, 868
MboII	GAAGA	3 cut(s)	19, 376, 901
MfeI	CAATTG	1 cut(s)	37
MhlI	GDGCHC	2 cut(s)	121, 723
MluCI	AATT	5 cut(s)	37, 340, 792, 892, 1049
MlyI	GAGTC	3 cut(s)	13, 432, 509
MnlI	CCTC	6 cut(s)	3, 545, 712, 738, 774, 895
MroI	TCCGGA	1 cut(s)	169
MseI	TTAA	7 cut(s)	71, 303, 531, 546, 558, 627, 1133
MslI	CAYNNNNRTG	2 cut(s)	770, 776
MspCI	CTTAAG	1 cut(s)	557
MspI	CCGG	1 cut(s)	170
MspR9I	CCNGG	2 cut(s)	311, 452
MunI	CAATTG	1 cut(s)	37
MvaI	CCWGG	2 cut(s)	311, 452
MwoI	GCNNNNNNNGC	6 cut(s)	66, 85, 201, 326, 1070, 1103
NdeI	CATATG	1 cut(s)	389
NdeII	GATC	3 cut(s)	155, 190, 868
NlaIII	CATG	4 cut(s)	199, 353, 634, 775
NlaIV	GGNNCC	4 cut(s)	118, 282, 330, 410
NmuCI	GTSAC	1 cut(s)	392
NspI	RCATGY	1 cut(s)	199
NspV	TTCGAA	1 cut(s)	576
PagI	TCATGA	1 cut(s)	771
PceI	AGGCCT	2 cut(s)	455, 905
PfeI	GAWTC	2 cut(s)	553, 748
PflFI	GACNNNGTC	1 cut(s)	356
PkrI	GCNGC	4 cut(s)	78, 214, 379, 1072
Ple19I	CGATCG	1 cut(s)	871
PleI	GAGTC	3 cut(s)	13, 432, 509
PpsI	GAGTC	3 cut(s)	13, 432, 509
Psp6I	CCWGG	2 cut(s)	309, 450
PspGI	CCWGG	2 cut(s)	309, 450
PspN4I	GGNNCC	4 cut(s)	118, 282, 330, 410
PstI	CTGCAG	1 cut(s)	407
PsyI	GACNNNGTC	1 cut(s)	356
PvuI	CGATCG	1 cut(s)	871
RsaI	GTAC	3 cut(s)	410, 589, 619
RsaNI	GTAC	3 cut(s)	409, 588, 618
RseI	CAYNNNNRTG	2 cut(s)	770, 776
SaqAI	TTAA	7 cut(s)	71, 303, 531, 546, 558, 627, 1133
SatI	GCNGC	4 cut(s)	77, 213, 378, 1071
Sau3AI	GATC	3 cut(s)	155, 190, 868
SbfI	CCTGCAGG	1 cut(s)	407
SchI	GAGTC	3 cut(s)	13, 432, 509
ScrFI	CCNGG	2 cut(s)	311, 452
SdaI	CCTGCAGG	1 cut(s)	407
SduI	GDGCHC	2 cut(s)	121, 723
SfaNI	GCATC	4 cut(s)	412, 672, 751, 863
SfcI	CTRYAG	1 cut(s)	403
SfuI	TTCGAA	1 cut(s)	576
SmiMI	CAYNNNNRTG	2 cut(s)	770, 776
SmlI	CTYRAG	1 cut(s)	557
SmoI	CTYRAG	1 cut(s)	557
Sse8387I	CCTGCAGG	1 cut(s)	407
Sse9I	AATT	5 cut(s)	37, 340, 792, 892, 1049
SseBI	AGGCCT	2 cut(s)	455, 905
SsiI	CCGC	2 cut(s)	1070, 1104
StuI	AGGCCT	2 cut(s)	455, 905
StyD4I	CCNGG	2 cut(s)	309, 450
TaaI	ACNGT	3 cut(s)	617, 857, 1131
TaiI	ACGT	1 cut(s)	50
TaqI	TCGA	6 cut(s)	154, 236, 576, 799, 871, 1090
TasI	AATT	5 cut(s)	37, 340, 792, 892, 1049
TatI	WGTACW	1 cut(s)	587
TauI	GCSGC	1 cut(s)	1073
TfiI	GAWTC	2 cut(s)	553, 748
Tru1I	TTAA	7 cut(s)	71, 303, 531, 546, 558, 627, 1133
Tru9I	TTAA	7 cut(s)	71, 303, 531, 546, 558, 627, 1133
TscAI	CASTG	1 cut(s)	597
TseFI	GTSAC	1 cut(s)	392
TseI	GCWGC	3 cut(s)	76, 212, 377
Tsp45I	GTSAC	1 cut(s)	392
TspDTI	ATGAA	6 cut(s)	376, 479, 536, 760, 788, 1025
TspGWI	ACGGA	1 cut(s)	933
TspRI	CASTG	1 cut(s)	597
Tth111I	GACNNNGTC	1 cut(s)	356
Vha464I	CTTAAG	1 cut(s)	557
XceI	RCATGY	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.