Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004266

Physical Location & Seq

Genomic Coordinates Reverse (-)

7525433 .. 7526378

Gene Structure 946 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16764

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGATAGTCACTCCCAACATGCCATGCAGCTAGTAAGCGCATCACTGGTGCCTATGGTGCTTAAAGCAGCCATAGAACTTGGTGTGCTTGACATAATACATAGAGCTGGCCCTGGAGCTCTGCTTTCACCTTCCCAAATTGCGTCTCAGCTCCCTTCCCAGAACAACCCAGGTGCCTCTTTAGTGCTTGATCGTATGCTTCGCCTTCTGTCTGCCCACTCAGTTCTCACTTGCTCTGTTTCCGCCCACCAAGTTGATCATGTGGAGGTTTTGAGGCTTTATGGATTGGCCCCCGTTGCCAAGTATTTCATTCGGGATCAGGATGGAGCATCATTAGCAACTTTACTAAATTATTGCAATGATAAGCATATTGCAGGAGATATGTTTGTAAGGATTCCGAAAGGAGATGCCATTTTCATGAAGGATAAACAGTGGGTACTACACCTTTTCGATGACAAACATTGCTTGATGATACTAAAGAACTGCTATGAGGCCTTGCTAGACCATGGGAAAATGATGGTGGTAAATTTGGTTATACCAGAAGCCCCTGAAACTAGTCTTTCTGCTAAAAGCTTGTTTCAGTTTGATATGTTCCTGATGAACACCACTACAAGTGAAAGGGAGAGGACAGAGAAAGAATTCGAAAGTTTGGCAAAACAAGCAGGGTTTTACACCATTCGAGTGGCATGTTCTGCATTTAATTTTTCAGTGGTGGAGCTTTTCAAGAGCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

244

Amino Acids

27.1

Weight (kDa)

6.35

Isoelectric Point (pI)

30.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	9 - 105	1.2e-16	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	122 - 223	9.8e-24	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33030 AT1G33030 AT1G33030
fragaria_vesca	FvH4_5g10440
malus_domestica	MD14G1140100.v1.1 MD14G1140300.v1.1 MD14G1140600.v1.1 MD14G1140900.v1.1
prunus_persica	Prupe.5G134400_v2.0.a1 Prupe.5G134400_v2.0.a1
pyrus_communis	pycom14g11580
rosa_chinensis	RchiOBHm_Chr7g0187771 RchiOBHm_Chr7g0187791
rosa_laevigata	RLG00000004756 RLG00000004757
rosa_multiflora	Rmu_sc0004483.1_g000030 Rmu_sc0004483.1_g000036
rosa_roxburghii	Rroxscaffold_3G00267080 Rroxscaffold_3G00267090
rosa_rugosa	Rorug06G0484100.1 Rorug06G0484200
rosa_samantha	Rh7AG089200 Rh7AG089400 Rh7BG091000 Rh7BG091100 Rh7CG090000 Rh7CG090100 Rh7CG090200 Rh7DG091600 Rh7DG091800
rosa_wichuraiana	Rw7G007700 Rw7G007710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	49, 173
AciI	CCGC	1 cut(s)	243
AclWI	GGATC	1 cut(s)	324
AcsI	RAATTY	2 cut(s)	526, 638
AfaI	GTAC	1 cut(s)	438
AgsI	TTSAA	1 cut(s)	724
AhlI	ACTAGT	1 cut(s)	554
AjnI	CCWGG	2 cut(s)	112, 169
AluBI	AGCT	6 cut(s)	31, 107, 119, 151, 573, 718
AluI	AGCT	6 cut(s)	31, 107, 119, 151, 573, 718
Alw21I	GWGCWC	1 cut(s)	121
Alw26I	GTCTC	1 cut(s)	150
AlwI	GGATC	1 cut(s)	324
AoxI	GGCC	3 cut(s)	109, 288, 492
ApeKI	GCWGC	2 cut(s)	28, 68
ApoI	RAATTY	2 cut(s)	526, 638
Asp700I	GAANNNNTTC	1 cut(s)	638
AspLEI	GCGC	1 cut(s)	41
AspS9I	GGNCC	2 cut(s)	110, 289
AsuHPI	GGTGA	1 cut(s)	120
AsuII	TTCGAA	1 cut(s)	642
BanI	GGYRCC	2 cut(s)	49, 173
BanII	GRGCYC	1 cut(s)	121
Bbv12I	GWGCWC	1 cut(s)	121
BbvI	GCAGC	2 cut(s)	40, 80
BccI	CCATC	2 cut(s)	317, 511
BciT130I	CCWGG	2 cut(s)	114, 171
BclI	TGATCA	1 cut(s)	256
BcoDI	GTCTC	1 cut(s)	150
BcuI	ACTAGT	1 cut(s)	554
BfaI	CTAG	3 cut(s)	32, 500, 555
BisI	GCNGC	2 cut(s)	29, 69
BlsI	GCNGC	2 cut(s)	30, 70
Bme1390I	CCNGG	2 cut(s)	114, 171
BmgT120I	GGNCC	2 cut(s)	110, 289
BmiI	GGNNCC	3 cut(s)	51, 175, 291
BmrFI	CCNGG	2 cut(s)	114, 171
BmsI	GCATC	3 cut(s)	50, 338, 397
BpmI	CTGGAG	1 cut(s)	135
Bpu14I	TTCGAA	1 cut(s)	642
BsaJI	CCNNGG	3 cut(s)	112, 169, 505
Bse1I	ACTGG	1 cut(s)	51
Bse3DI	GCAATG	2 cut(s)	364, 460
BseBI	CCWGG	2 cut(s)	114, 171
BseDI	CCNNGG	3 cut(s)	112, 169, 505
BseGI	GGATG	1 cut(s)	328
BseMI	GCAATG	2 cut(s)	364, 460
BseMII	CTCAG	2 cut(s)	161, 234
BseNI	ACTGG	1 cut(s)	51
BseXI	GCAGC	2 cut(s)	40, 80
BshFI	GGCC	3 cut(s)	111, 290, 494
BshNI	GGYRCC	2 cut(s)	49, 173
BsiHKAI	GWGCWC	1 cut(s)	121
BsmAI	GTCTC	1 cut(s)	150
BsmBI	CGTCTC	1 cut(s)	150
BsnI	GGCC	3 cut(s)	111, 290, 494
Bsp119I	TTCGAA	1 cut(s)	642
Bsp1286I	GDGCHC	1 cut(s)	121
Bsp143I	GATC	3 cut(s)	190, 256, 316
Bsp19I	CCATGG	1 cut(s)	505
BspACI	CCGC	1 cut(s)	243
BspANI	GGCC	3 cut(s)	111, 290, 494
BspCNI	CTCAG	2 cut(s)	160, 233
BspHI	TCATGA	1 cut(s)	417
BspLI	GGNNCC	3 cut(s)	51, 175, 291
BspPI	GGATC	1 cut(s)	324
BspT104I	TTCGAA	1 cut(s)	642
BspT107I	GGYRCC	2 cut(s)	49, 173
BsrDI	GCAATG	2 cut(s)	364, 460
BsrI	ACTGG	1 cut(s)	51
BssECI	CCNNGG	3 cut(s)	112, 169, 505
BssMI	GATC	3 cut(s)	190, 256, 316
BssT1I	CCWWGG	1 cut(s)	505
Bst2UI	CCWGG	2 cut(s)	114, 171
Bst4CI	ACNGT	1 cut(s)	432
BstAPI	GCANNNNNTGC	1 cut(s)	692
BstBI	TTCGAA	1 cut(s)	642
BstC8I	GCNNGC	1 cut(s)	109
BstDEI	CTNAG	2 cut(s)	147, 220
BstDSI	CCRYGG	1 cut(s)	505
BstF5I	GGATG	1 cut(s)	328
BstHHI	GCGC	1 cut(s)	41
BstKTI	GATC	3 cut(s)	193, 259, 319
BstMAI	GTCTC	1 cut(s)	150
BstMBI	GATC	3 cut(s)	190, 256, 316
BstMWI	GCNNNNNNNGC	5 cut(s)	58, 296, 335, 659, 692
BstNI	CCWGG	2 cut(s)	114, 171
BstNSI	RCATGY	3 cut(s)	23, 690, 733
BstSCI	CCNGG	2 cut(s)	112, 169
BstV1I	GCAGC	2 cut(s)	40, 80
BstXI	CCANNNNNNTGG	1 cut(s)	682
BsuRI	GGCC	3 cut(s)	111, 290, 494
BtgI	CCRYGG	1 cut(s)	505
BtsCI	GGATG	1 cut(s)	328
BtsIMutI	CAGTG	3 cut(s)	44, 437, 714
Cac8I	GCNNGC	1 cut(s)	109
CciI	TCATGA	1 cut(s)	417
CfoI	GCGC	1 cut(s)	41
Cfr13I	GGNCC	2 cut(s)	110, 289
CseI	GACGC	1 cut(s)	132
Csp6I	GTAC	1 cut(s)	437
CviAII	CATG	7 cut(s)	20, 25, 260, 418, 506, 687, 730
CviQI	GTAC	1 cut(s)	437
DdeI	CTNAG	2 cut(s)	147, 220
DpnI	GATC	3 cut(s)	192, 258, 318
DpnII	GATC	3 cut(s)	190, 256, 316
EciI	GGCGGA	1 cut(s)	232
Ecl136II	GAGCTC	1 cut(s)	119
Eco130I	CCWWGG	1 cut(s)	505
Eco147I	AGGCCT	1 cut(s)	494
Eco24I	GRGCYC	1 cut(s)	121
Eco53kI	GAGCTC	1 cut(s)	119
EcoICRI	GAGCTC	1 cut(s)	119
EcoRI	GAATTC	1 cut(s)	638
EcoRII	CCWGG	2 cut(s)	112, 169
EcoT14I	CCWWGG	1 cut(s)	505
EcoT38I	GRGCYC	1 cut(s)	121
ErhI	CCWWGG	1 cut(s)	505
Esp3I	CGTCTC	1 cut(s)	150
FaeI	CATG	7 cut(s)	23, 28, 263, 421, 509, 690, 733
FatI	CATG	7 cut(s)	19, 24, 259, 417, 505, 686, 729
FbaI	TGATCA	1 cut(s)	256
Fnu4HI	GCNGC	2 cut(s)	29, 69
FokI	GGATG	1 cut(s)	335
FriOI	GRGCYC	1 cut(s)	121
Fsp4HI	GCNGC	2 cut(s)	29, 69
FspBI	CTAG	3 cut(s)	32, 500, 555
GlaI	GCGC	1 cut(s)	40
GluI	GCNGC	2 cut(s)	29, 69
GsuI	CTGGAG	1 cut(s)	135
HaeIII	GGCC	3 cut(s)	111, 290, 494
HgaI	GACGC	1 cut(s)	132
HhaI	GCGC	1 cut(s)	41
Hin1II	CATG	7 cut(s)	23, 28, 263, 421, 509, 690, 733
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HindIII	AAGCTT	1 cut(s)	571
HinfI	GANTC	1 cut(s)	394
HphI	GGTGA	1 cut(s)	120
Hpy188I	TCNGA	1 cut(s)	399
Hpy188III	TCNNGA	5 cut(s)	314, 320, 418, 595, 724
HpyAV	CCTTC	4 cut(s)	141, 165, 215, 415
HpyCH4III	ACNGT	1 cut(s)	432
HpyCH4V	TGCA	4 cut(s)	28, 357, 374, 695
HpyF10VI	GCNNNNNNNGC	5 cut(s)	58, 296, 335, 659, 692
HpyF3I	CTNAG	2 cut(s)	147, 220
Hsp92II	CATG	7 cut(s)	23, 28, 263, 421, 509, 690, 733
HspAI	GCGC	1 cut(s)	39
Ksp22I	TGATCA	1 cut(s)	256
Kzo9I	GATC	3 cut(s)	190, 256, 316
LmnI	GCTCC	4 cut(s)	116, 156, 326, 715
Lsp1109I	GCAGC	2 cut(s)	40, 80
LweI	GCATC	3 cut(s)	50, 338, 397
MaeI	CTAG	3 cut(s)	32, 500, 555
MaeIII	GTNAC	1 cut(s)	8
MalI	GATC	3 cut(s)	192, 258, 318
MboI	GATC	3 cut(s)	190, 256, 316
MhlI	GDGCHC	1 cut(s)	121
MluCI	AATT	5 cut(s)	138, 349, 526, 638, 700
MnlI	CCTC	5 cut(s)	187, 259, 267, 484, 618
MroXI	GAANNNNTTC	1 cut(s)	638
MseI	TTAA	2 cut(s)	63, 699
MslI	CAYNNNNRTG	2 cut(s)	416, 680
MspR9I	CCNGG	2 cut(s)	114, 171
MvaI	CCWGG	2 cut(s)	114, 171
MwoI	GCNNNNNNNGC	5 cut(s)	58, 296, 335, 659, 692
NcoI	CCATGG	1 cut(s)	505
NdeII	GATC	3 cut(s)	190, 256, 316
NlaIII	CATG	7 cut(s)	23, 28, 263, 421, 509, 690, 733
NlaIV	GGNNCC	3 cut(s)	51, 175, 291
NmuCI	GTSAC	1 cut(s)	8
NspI	RCATGY	3 cut(s)	23, 690, 733
NspV	TTCGAA	1 cut(s)	642
PagI	TCATGA	1 cut(s)	417
PceI	AGGCCT	1 cut(s)	494
PdmI	GAANNNNTTC	1 cut(s)	638
PfeI	GAWTC	1 cut(s)	394
PkrI	GCNGC	2 cut(s)	30, 70
Psp124BI	GAGCTC	1 cut(s)	121
Psp6I	CCWGG	2 cut(s)	112, 169
PspGI	CCWGG	2 cut(s)	112, 169
PspN4I	GGNNCC	3 cut(s)	51, 175, 291
PspPI	GGNCC	2 cut(s)	110, 289
RsaI	GTAC	1 cut(s)	438
RsaNI	GTAC	1 cut(s)	437
RseI	CAYNNNNRTG	2 cut(s)	416, 680
SacI	GAGCTC	1 cut(s)	121
SaqAI	TTAA	2 cut(s)	63, 699
SatI	GCNGC	2 cut(s)	29, 69
Sau3AI	GATC	3 cut(s)	190, 256, 316
Sau96I	GGNCC	2 cut(s)	110, 289
ScrFI	CCNGG	2 cut(s)	114, 171
SduI	GDGCHC	1 cut(s)	121
SfaNI	GCATC	3 cut(s)	50, 338, 397
SfuI	TTCGAA	1 cut(s)	642
SmiMI	CAYNNNNRTG	2 cut(s)	416, 680
SpeI	ACTAGT	1 cut(s)	554
Sse9I	AATT	5 cut(s)	138, 349, 526, 638, 700
SseBI	AGGCCT	1 cut(s)	494
SsiI	CCGC	1 cut(s)	243
SspMI	CTAG	3 cut(s)	32, 500, 555
SstI	GAGCTC	1 cut(s)	121
StuI	AGGCCT	1 cut(s)	494
StyD4I	CCNGG	2 cut(s)	112, 169
StyI	CCWWGG	1 cut(s)	505
TaaI	ACNGT	1 cut(s)	432
TaqI	TCGA	3 cut(s)	450, 642, 679
TasI	AATT	5 cut(s)	138, 349, 526, 638, 700
TfiI	GAWTC	1 cut(s)	394
Tru1I	TTAA	2 cut(s)	63, 699
Tru9I	TTAA	2 cut(s)	63, 699
TscAI	CASTG	3 cut(s)	51, 437, 714
TseFI	GTSAC	1 cut(s)	8
TseI	GCWGC	2 cut(s)	28, 68
Tsp45I	GTSAC	1 cut(s)	8
TspDTI	ATGAA	4 cut(s)	298, 406, 434, 614
TspRI	CASTG	3 cut(s)	51, 437, 714
XapI	RAATTY	2 cut(s)	526, 638
XceI	RCATGY	3 cut(s)	23, 690, 733
XmnI	GAANNNNTTC	1 cut(s)	638
XspI	CTAG	3 cut(s)	32, 500, 555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.