Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0004266

Physical Location & Seq

Genomic Coordinates Forward (+)

60210407 .. 60212208

Gene Structure 1802 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00267090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGAGAGTCAATCCCAACATGCCATGCAGCTAGTAAGCGCATCACTGGTGCCTATGGTGCTTAAAGCAGCCATAGAACTTGGTGTGCTTGACATAATACATAGAGCTGGCCCTGGAGCTCTGCTTTCACCTTCCCAAATTGCGTCTCAGCTCTCTTCTCAGAACAACCCAGGTGCCCCTTTAGTGCTTGATCGTATGCTTCGCCTTCTGTCTGCCCACTCAGTTCTCACTTGCTCTGTTTCCGCCCACCAAGTTGATCATGTGGAGGTTTTGAGGCTTTATGGATTGGCCCCCGTTGCCAAGTATTTCATTCGGGACCAGGATGGAGCATCATTAGCAACTTTACTAAATTATTGCAATGATAAGGTCAACACAGATAGCTGGTACCATTTGGCAGATGCAGTTTTGGAAGGAGGAATTCCATTTACCAAGACCTATGGAATGGATGTGGTGGAGTATCTAGGGAAAGATGCTAGATGTGGTGAAATATTTAAAAACTCGATGAAAGAGTTTAACCCAATTTTAATGAAGGAGATCCTGGAGAATTATAAAGGTTTTGAAGGTGTAAATACACTCGTAGATGTGGGTGGTGGTGATGGTACTATCCTTAACATGATTGTCTCCAAGTACCCTACCATCAAGGGTATCAACTATGATTTAGCTTCTGTTATAGAAAAGTCTCCCTCCTATCCTGGTATAGAGCATATTGCAGGAGATATGTTTGTAAGGATTCCGAAAGGAGATGCCATTTTCATGAAGTGGGTACTACACCTTTTCGATGACAAACATTGCTTGATGATACTAAAGAACTGCTATGAGGCCTTGCCAGACCATGGGAAAATGATGGTAGTAAATTTGGTTATACCAGAAGCCCCTGAAACTGGTCTTTCTGCTAAAAGCTTGTTTCAGTTTGATATGTTCCTGATGAACACCACTACAAGTGAAAGGGAGAGGACAGAGAAAGAATTCGAAAGTTTGGCAAAACAAGCAGGGTTTTACACCATTCGAGTGGCATGTTCTGCATTTAATTTTTCAGTGGTGGAGCTTTTCAAGAGCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

353

Amino Acids

39.01

Weight (kDa)

5.59

Isoelectric Point (pI)

31.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	9 - 105	1.8e-16	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	128 - 332	1.4e-59	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33030 AT1G33030 AT1G33030
fragaria_vesca	FvH4_5g10440
malus_domestica	MD14G1140100.v1.1 MD14G1140300.v1.1 MD14G1140600.v1.1 MD14G1140900.v1.1
prunus_persica	Prupe.5G134400_v2.0.a1 Prupe.5G134400_v2.0.a1
pyrus_communis	pycom14g11580
rosa_chinensis	RchiOBHm_Chr7g0187771 RchiOBHm_Chr7g0187791
rosa_laevigata	RLG00000004756 RLG00000004757
rosa_multiflora	Rmu_sc0004483.1_g000030 Rmu_sc0004483.1_g000036
rosa_roxburghii	Rroxscaffold_3G00267080 Rroxscaffold_3G00267090
rosa_rugosa	Rorug06G0484100.1 Rorug06G0484200
rosa_samantha	Rh7AG089200 Rh7AG089400 Rh7BG091000 Rh7BG091100 Rh7CG090000 Rh7CG090100 Rh7CG090200 Rh7DG091600 Rh7DG091800
rosa_wichuraiana	Rw7G007700 Rw7G007710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	549
Acc65I	GGTACC	1 cut(s)	384
AccB1I	GGYRCC	3 cut(s)	49, 173, 384
AccB7I	CCANNNNNTGG	1 cut(s)	833
AciI	CCGC	1 cut(s)	243
AclWI	GGATC	1 cut(s)	529
AcsI	RAATTY	3 cut(s)	417, 853, 965
AfaI	GTAC	4 cut(s)	386, 601, 629, 765
AfiI	CCNNNNNNNGG	2 cut(s)	833, 881
AgsI	TTSAA	2 cut(s)	560, 1051
AjnI	CCWGG	5 cut(s)	112, 169, 318, 537, 691
AluBI	AGCT	8 cut(s)	31, 107, 119, 151, 381, 662, 900, 1045
AluI	AGCT	8 cut(s)	31, 107, 119, 151, 381, 662, 900, 1045
Alw21I	GWGCWC	1 cut(s)	121
Alw26I	GTCTC	3 cut(s)	150, 625, 684
AlwI	GGATC	1 cut(s)	529
AoxI	GGCC	3 cut(s)	109, 288, 819
ApeKI	GCWGC	2 cut(s)	28, 68
ApoI	RAATTY	3 cut(s)	417, 853, 965
Asp700I	GAANNNNTTC	1 cut(s)	965
Asp718I	GGTACC	1 cut(s)	384
AspLEI	GCGC	1 cut(s)	41
AspS9I	GGNCC	3 cut(s)	110, 289, 316
AsuHPI	GGTGA	3 cut(s)	120, 494, 605
AsuII	TTCGAA	1 cut(s)	969
AvaII	GGWCC	1 cut(s)	316
BaeGI	GKGCMC	1 cut(s)	178
BanI	GGYRCC	3 cut(s)	49, 173, 384
BanII	GRGCYC	1 cut(s)	121
Bbv12I	GWGCWC	1 cut(s)	121
BbvI	GCAGC	2 cut(s)	40, 80
BccI	CCATC	4 cut(s)	317, 590, 644, 838
BciT130I	CCWGG	5 cut(s)	114, 171, 320, 539, 693
BclI	TGATCA	1 cut(s)	256
BcoDI	GTCTC	3 cut(s)	150, 625, 684
BfaI	CTAG	3 cut(s)	32, 461, 474
BisI	GCNGC	2 cut(s)	29, 69
BlsI	GCNGC	2 cut(s)	30, 70
Bme1390I	CCNGG	5 cut(s)	114, 171, 320, 539, 693
Bme18I	GGWCC	1 cut(s)	316
BmgT120I	GGNCC	3 cut(s)	110, 289, 316
BmiI	GGNNCC	5 cut(s)	51, 175, 291, 317, 386
BmrFI	CCNGG	5 cut(s)	114, 171, 320, 539, 693
BmsI	GCATC	5 cut(s)	50, 338, 388, 460, 733
BpmI	CTGGAG	2 cut(s)	135, 560
Bpu14I	TTCGAA	1 cut(s)	969
BsaJI	CCNNGG	3 cut(s)	112, 169, 832
Bsc4I	CCNNNNNNNGG	2 cut(s)	833, 881
Bse1I	ACTGG	2 cut(s)	51, 886
Bse3DI	GCAATG	2 cut(s)	364, 787
BseBI	CCWGG	5 cut(s)	114, 171, 320, 539, 693
BseDI	CCNNGG	3 cut(s)	112, 169, 832
BseGI	GGATG	2 cut(s)	328, 451
BseLI	CCNNNNNNNGG	2 cut(s)	833, 881
BseMI	GCAATG	2 cut(s)	364, 787
BseMII	CTCAG	3 cut(s)	161, 173, 234
BseNI	ACTGG	2 cut(s)	51, 886
BseSI	GKGCMC	1 cut(s)	178
BseXI	GCAGC	2 cut(s)	40, 80
BshFI	GGCC	3 cut(s)	111, 290, 821
BshNI	GGYRCC	3 cut(s)	49, 173, 384
BsiHKAI	GWGCWC	1 cut(s)	121
BslFI	GGGAC	1 cut(s)	329
BslI	CCNNNNNNNGG	2 cut(s)	833, 881
BsmAI	GTCTC	3 cut(s)	150, 625, 684
BsmBI	CGTCTC	1 cut(s)	150
BsmFI	GGGAC	1 cut(s)	329
BsnI	GGCC	3 cut(s)	111, 290, 821
Bsp119I	TTCGAA	1 cut(s)	969
Bsp1286I	GDGCHC	2 cut(s)	121, 178
Bsp143I	GATC	3 cut(s)	190, 256, 534
Bsp19I	CCATGG	1 cut(s)	832
BspACI	CCGC	1 cut(s)	243
BspANI	GGCC	3 cut(s)	111, 290, 821
BspCNI	CTCAG	3 cut(s)	160, 172, 233
BspHI	TCATGA	1 cut(s)	753
BspLI	GGNNCC	5 cut(s)	51, 175, 291, 317, 386
BspPI	GGATC	1 cut(s)	529
BspT104I	TTCGAA	1 cut(s)	969
BspT107I	GGYRCC	3 cut(s)	49, 173, 384
BsrDI	GCAATG	2 cut(s)	364, 787
BsrI	ACTGG	2 cut(s)	51, 886
BssECI	CCNNGG	3 cut(s)	112, 169, 832
BssMI	GATC	3 cut(s)	190, 256, 534
BssT1I	CCWWGG	1 cut(s)	832
Bst2UI	CCWGG	5 cut(s)	114, 171, 320, 539, 693
Bst6I	CTCTTC	1 cut(s)	160
BstAPI	GCANNNNNTGC	1 cut(s)	1019
BstBI	TTCGAA	1 cut(s)	969
BstC8I	GCNNGC	1 cut(s)	109
BstDEI	CTNAG	3 cut(s)	147, 159, 220
BstDSI	CCRYGG	1 cut(s)	832
BstF5I	GGATG	2 cut(s)	328, 451
BstHHI	GCGC	1 cut(s)	41
BstKTI	GATC	3 cut(s)	193, 259, 537
BstMAI	GTCTC	3 cut(s)	150, 625, 684
BstMBI	GATC	3 cut(s)	190, 256, 534
BstMWI	GCNNNNNNNGC	5 cut(s)	58, 296, 335, 986, 1019
BstNI	CCWGG	5 cut(s)	114, 171, 320, 539, 693
BstNSI	RCATGY	3 cut(s)	23, 1017, 1060
BstSCI	CCNGG	5 cut(s)	112, 169, 318, 537, 691
BstSLI	GKGCMC	1 cut(s)	178
BstV1I	GCAGC	2 cut(s)	40, 80
BstX2I	RGATCY	1 cut(s)	534
BstXI	CCANNNNNNTGG	1 cut(s)	1009
BstYI	RGATCY	1 cut(s)	534
BsuRI	GGCC	3 cut(s)	111, 290, 821
BtgI	CCRYGG	1 cut(s)	832
BtsCI	GGATG	2 cut(s)	328, 451
BtsIMutI	CAGTG	2 cut(s)	44, 1041
Cac8I	GCNNGC	1 cut(s)	109
CciI	TCATGA	1 cut(s)	753
CfoI	GCGC	1 cut(s)	41
Cfr13I	GGNCC	3 cut(s)	110, 289, 316
CseI	GACGC	1 cut(s)	132
Csp6I	GTAC	4 cut(s)	385, 600, 628, 764
CviAII	CATG	8 cut(s)	20, 25, 260, 613, 754, 833, 1014, 1057
CviQI	GTAC	4 cut(s)	385, 600, 628, 764
DdeI	CTNAG	3 cut(s)	147, 159, 220
DpnI	GATC	3 cut(s)	192, 258, 536
DpnII	GATC	3 cut(s)	190, 256, 534
DraI	TTTAAA	1 cut(s)	493
Eam1104I	CTCTTC	1 cut(s)	160
EarI	CTCTTC	1 cut(s)	160
EciI	GGCGGA	1 cut(s)	232
Ecl136II	GAGCTC	1 cut(s)	119
Eco130I	CCWWGG	1 cut(s)	832
Eco147I	AGGCCT	1 cut(s)	821
Eco24I	GRGCYC	1 cut(s)	121
Eco47I	GGWCC	1 cut(s)	316
Eco53kI	GAGCTC	1 cut(s)	119
EcoICRI	GAGCTC	1 cut(s)	119
EcoRI	GAATTC	2 cut(s)	417, 965
EcoRII	CCWGG	5 cut(s)	112, 169, 318, 537, 691
EcoT14I	CCWWGG	1 cut(s)	832
EcoT38I	GRGCYC	1 cut(s)	121
ErhI	CCWWGG	1 cut(s)	832
Esp3I	CGTCTC	1 cut(s)	150
FaeI	CATG	8 cut(s)	23, 28, 263, 616, 757, 836, 1017, 1060
FaqI	GGGAC	1 cut(s)	329
FatI	CATG	8 cut(s)	19, 24, 259, 612, 753, 832, 1013, 1056
FbaI	TGATCA	1 cut(s)	256
Fnu4HI	GCNGC	2 cut(s)	29, 69
FokI	GGATG	2 cut(s)	335, 458
FriOI	GRGCYC	1 cut(s)	121
Fsp4HI	GCNGC	2 cut(s)	29, 69
FspBI	CTAG	3 cut(s)	32, 461, 474
GlaI	GCGC	1 cut(s)	40
GluI	GCNGC	2 cut(s)	29, 69
GsuI	CTGGAG	2 cut(s)	135, 560
HaeIII	GGCC	3 cut(s)	111, 290, 821
HgaI	GACGC	1 cut(s)	132
HhaI	GCGC	1 cut(s)	41
Hin1II	CATG	8 cut(s)	23, 28, 263, 616, 757, 836, 1017, 1060
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HindIII	AAGCTT	1 cut(s)	898
HinfI	GANTC	2 cut(s)	7, 730
HphI	GGTGA	3 cut(s)	120, 494, 605
Hpy166II	GTNNAC	1 cut(s)	370
Hpy188I	TCNGA	2 cut(s)	162, 735
Hpy188III	TCNNGA	4 cut(s)	314, 754, 922, 1051
Hpy8I	GTNNAC	1 cut(s)	370
HpyAV	CCTTC	5 cut(s)	141, 215, 404, 523, 554
HpyCH4V	TGCA	5 cut(s)	28, 357, 401, 710, 1022
HpyF10VI	GCNNNNNNNGC	5 cut(s)	58, 296, 335, 986, 1019
HpyF3I	CTNAG	3 cut(s)	147, 159, 220
Hsp92II	CATG	8 cut(s)	23, 28, 263, 616, 757, 836, 1017, 1060
HspAI	GCGC	1 cut(s)	39
KpnI	GGTACC	1 cut(s)	388
Ksp22I	TGATCA	1 cut(s)	256
Kzo9I	GATC	3 cut(s)	190, 256, 534
LmnI	GCTCC	3 cut(s)	116, 326, 1042
Lsp1109I	GCAGC	2 cut(s)	40, 80
LweI	GCATC	5 cut(s)	50, 338, 388, 460, 733
MaeI	CTAG	3 cut(s)	32, 461, 474
MalI	GATC	3 cut(s)	192, 258, 536
MboI	GATC	3 cut(s)	190, 256, 534
MboII	GAAGA	1 cut(s)	147
MflI	RGATCY	1 cut(s)	534
MhlI	GDGCHC	2 cut(s)	121, 178
MluCI	AATT	8 cut(s)	138, 349, 417, 519, 544, 853, 965, 1027
MlyI	GAGTC	1 cut(s)	16
MnlI	CCTC	6 cut(s)	259, 267, 407, 694, 811, 945
MroXI	GAANNNNTTC	1 cut(s)	965
MseI	TTAA	6 cut(s)	63, 492, 513, 524, 609, 1026
MslI	CAYNNNNRTG	2 cut(s)	752, 1007
MspR9I	CCNGG	5 cut(s)	114, 171, 320, 539, 693
MvaI	CCWGG	5 cut(s)	114, 171, 320, 539, 693
MwoI	GCNNNNNNNGC	5 cut(s)	58, 296, 335, 986, 1019
NcoI	CCATGG	1 cut(s)	832
NdeII	GATC	3 cut(s)	190, 256, 534
NlaIII	CATG	8 cut(s)	23, 28, 263, 616, 757, 836, 1017, 1060
NlaIV	GGNNCC	5 cut(s)	51, 175, 291, 317, 386
NspI	RCATGY	3 cut(s)	23, 1017, 1060
NspV	TTCGAA	1 cut(s)	969
PagI	TCATGA	1 cut(s)	753
PceI	AGGCCT	1 cut(s)	821
PdmI	GAANNNNTTC	1 cut(s)	965
PfeI	GAWTC	1 cut(s)	730
PflMI	CCANNNNNTGG	1 cut(s)	833
PfoI	TCCNGGA	1 cut(s)	537
PkrI	GCNGC	2 cut(s)	30, 70
PleI	GAGTC	1 cut(s)	15
PpsI	GAGTC	1 cut(s)	15
PsiI	TTATAA	1 cut(s)	549
Psp124BI	GAGCTC	1 cut(s)	121
Psp6I	CCWGG	5 cut(s)	112, 169, 318, 537, 691
PspGI	CCWGG	5 cut(s)	112, 169, 318, 537, 691
PspN4I	GGNNCC	5 cut(s)	51, 175, 291, 317, 386
PspPI	GGNCC	3 cut(s)	110, 289, 316
PsuI	RGATCY	1 cut(s)	534
RsaI	GTAC	4 cut(s)	386, 601, 629, 765
RsaNI	GTAC	4 cut(s)	385, 600, 628, 764
RseI	CAYNNNNRTG	2 cut(s)	752, 1007
SacI	GAGCTC	1 cut(s)	121
SaqAI	TTAA	6 cut(s)	63, 492, 513, 524, 609, 1026
SatI	GCNGC	2 cut(s)	29, 69
Sau3AI	GATC	3 cut(s)	190, 256, 534
Sau96I	GGNCC	3 cut(s)	110, 289, 316
SchI	GAGTC	1 cut(s)	16
ScrFI	CCNGG	5 cut(s)	114, 171, 320, 539, 693
SduI	GDGCHC	2 cut(s)	121, 178
SfaNI	GCATC	5 cut(s)	50, 338, 388, 460, 733
SfuI	TTCGAA	1 cut(s)	969
SinI	GGWCC	1 cut(s)	316
SmiMI	CAYNNNNRTG	2 cut(s)	752, 1007
Sse9I	AATT	8 cut(s)	138, 349, 417, 519, 544, 853, 965, 1027
SseBI	AGGCCT	1 cut(s)	821
SsiI	CCGC	1 cut(s)	243
SspI	AATATT	1 cut(s)	489
SspMI	CTAG	3 cut(s)	32, 461, 474
SstI	GAGCTC	1 cut(s)	121
StuI	AGGCCT	1 cut(s)	821
StyD4I	CCNGG	5 cut(s)	112, 169, 318, 537, 691
StyI	CCWWGG	1 cut(s)	832
TaqI	TCGA	4 cut(s)	500, 777, 969, 1006
TasI	AATT	8 cut(s)	138, 349, 417, 519, 544, 853, 965, 1027
TfiI	GAWTC	1 cut(s)	730
Tru1I	TTAA	6 cut(s)	63, 492, 513, 524, 609, 1026
Tru9I	TTAA	6 cut(s)	63, 492, 513, 524, 609, 1026
TscAI	CASTG	2 cut(s)	51, 1041
TseI	GCWGC	2 cut(s)	28, 68
TspDTI	ATGAA	6 cut(s)	298, 518, 542, 742, 770, 941
TspRI	CASTG	2 cut(s)	51, 1041
Van91I	CCANNNNNTGG	1 cut(s)	833
VpaK11BI	GGWCC	1 cut(s)	316
XapI	RAATTY	3 cut(s)	417, 853, 965
XceI	RCATGY	3 cut(s)	23, 1017, 1060
XmnI	GAANNNNTTC	1 cut(s)	965
XspI	CTAG	3 cut(s)	32, 461, 474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.