AT1G35620

Thioredoxin-like domain

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
13156346 .. 13158467
2122 bp
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UTR
Exon/CDS
Intron
AT1G35620.1

Sequence Viewer

Length: 1323 bp
ATGCGTTCGTTAAAGTTACTCCTTTGTTGGATCTCGTTTCTTACGTTATCAATCTCAATCTCTGCATCGTCAGATGATCAATTCACCCTCGACGGAACAGTTTTAGAACTCACCGATTCGAATTTCGACTCGGCGATTTCAACTTTCGATTGCATCTTTGTTGATTTCTATGCTCCTTGGTGTGGTCACTGCAAGCGTCTCAATCCCGAGTTAGACGCAGCTGCTCCAATTCTTGCTAAATTGAAGCAGCCTATTGTGATTGCAAAGCTGAATGCTGATAAGTATTCTCGTCTCGCTCGGAAGATTGAGATTGATGCATTTCCGACTCTCATGCTTTATAACCATGGAGTTCCAATGGAGTACTATGGACCAAGGAAAGCAGATTTGCTTGTGCGTTACTTGAAGAAGTTTGTTGCTCCAGATGTTGCGGTTCTTGAGTCAGACTCAACTGTCAAGGAGTTTGTTGAAGATGCTGGGACATTCTTCCCTGTGTTTATCGGGTTTGGTTTGAACGAATCGATAATATCAGGATTAGGTCGGAAGTATAAGAAGAAGGCATGGTTTGCTGTTTCAAAGGAAGTTTCAGAGGATACTATGGTTTCTTATGATTTTGATAAGGCTCCTGCATTAGTTGCCAATCATCCAACTTACAATGAGCATAGCGTGTTTTACGGGCCATTCGAAGATGGATTCTTGGAGGAATTTGTGAAACAGAGTTTTCTTCCTTTGATTCTACCTATTAACCATGACACATTGAAGTTGTTGAAGGACGATGAGAGAAAGATTGTCTTGACGATCGTGGAAGATGAAACACACGAAAGCTTGGAGAAACTATACAAAGCATTGAGAGCAGCTGCTCATGCGAACCGCGACCTCGTTTTTGGCTACGTCGGTGTGAAGCAGTTTGAAGAGTTTGTTGACTCGTTTCATGTAGACAAGAAGACAAATCTGCCTAAGATTGTTGTGTGGGATGGAGATGAAGAGTATGATCAGGTGACGGGTATAGAGACCATAACCCAAGAGGAAGATCATTTGACCCAAGTGTCTCGGTTTCTAGAGGGCTATAGAGAAGGAAGAACAGAGAAGAAGAAAATCAACGGACCATCGTTCATGGGATTTATCAACTCAATGATTGGGATTAGGTCAGTGTACATCCTTGTGTTCTTGGTTGCGGTCATTATGATGCTACGGAGCCTCGGTCAAGTTGAGGAGCCTACTGGAGTCCGGACCGCCACAGCAGTCCGTGAAAGAGTTGATCAGGCCACTACTGTCCCTGAAGATGAAAGCAGTGAGCATAAGCCTAGTGACAAAAAAGAGGACTAG

Protein Analysis

440

Amino Acids

49.85

Weight (kDa)

5.12

Isoelectric Point (pI)

34.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thioredoxin PF00085 34 - 136 2.1e-24 Thioredoxin
Thioredoxin_6 PF13848 182 - 330 1.6e-10 Thioredoxin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 339
AasI GACNNNNNNGTC 2 cut(s) 449, 1042
AccI GTMKAC 1 cut(s) 933
AccII CGCG 1 cut(s) 870
AccIII TCCGGA 1 cut(s) 1224
AciI CCGC 4 cut(s) 428, 868, 1172, 1230
AclWI GGATC 1 cut(s) 38
AcsI RAATTY 2 cut(s) 121, 701
AcuI CTGAAG 1 cut(s) 1296
AfaI GTAC 2 cut(s) 362, 1151
AfiI CCNNNNNNNGG 1 cut(s) 182
AgsI TTSAA 9 cut(s) 141, 244, 403, 467, 511, 573, 757, 766, 908
AluBI AGCT 4 cut(s) 221, 268, 822, 854
AluI AGCT 4 cut(s) 221, 268, 822, 854
Alw26I GTCTC 4 cut(s) 203, 296, 1001, 1050
AlwI GGATC 1 cut(s) 38
Ama87I CYCGRG 1 cut(s) 206
Aor13HI TCCGGA 1 cut(s) 1224
AoxI GGCC 2 cut(s) 674, 1260
ApeKI GCWGC 5 cut(s) 218, 221, 247, 851, 854
ApoI RAATTY 2 cut(s) 121, 701
ArsI GACNNNNNNTTYG 2 cut(s) 863, 895
AspS9I GGNCC 4 cut(s) 368, 674, 1100, 1227
AsuHPI GGTGA 3 cut(s) 76, 103, 1006
AsuII TTCGAA 2 cut(s) 119, 681
AvaI CYCGRG 1 cut(s) 206
AvaII GGWCC 3 cut(s) 368, 1100, 1227
BaeI ACNNNNGTAYC 2 cut(s) 582, 615
BbsI GAAGAC 1 cut(s) 947
BbvI GCAGC 5 cut(s) 208, 230, 259, 841, 863
BccI CCATC 3 cut(s) 680, 965, 1111
BcgI CGANNNNNNTGC 2 cut(s) 313, 347
BciVI GTATCC 1 cut(s) 583
BclI TGATCA 3 cut(s) 76, 988, 1255
BcoDI GTCTC 4 cut(s) 203, 296, 1001, 1050
BfaI CTAG 3 cut(s) 1055, 1302, 1321
BfmI CTRYAG 1 cut(s) 1063
BfuI GTATCC 1 cut(s) 583
BisI GCNGC 5 cut(s) 219, 222, 248, 852, 855
BlsI GCNGC 5 cut(s) 220, 223, 249, 853, 856
BmcAI AGTACT 1 cut(s) 362
Bme18I GGWCC 3 cut(s) 368, 1100, 1227
BmeT110I CYCGRG 1 cut(s) 206
BmgT120I GGNCC 4 cut(s) 368, 674, 1100, 1227
BmiI GGNNCC 3 cut(s) 621, 1193, 1212
BmsI GCATC 5 cut(s) 74, 162, 304, 460, 1173
BpiI GAAGAC 1 cut(s) 947
BplI GAGNNNNNCTC 2 cut(s) 428, 460
BpmI CTGGAG 2 cut(s) 402, 1239
Bpu14I TTCGAA 2 cut(s) 119, 681
BpuEI CTTGAG 1 cut(s) 455
Bsa29I ATCGAT 1 cut(s) 518
BsaI GGTCTC 1 cut(s) 1001
BsaJI CCNNGG 4 cut(s) 176, 343, 371, 1195
BsaWI WCCGGW 1 cut(s) 1224
BsaXI ACNNNNNCTCC 2 cut(s) 1183, 1213
Bsc4I CCNNNNNNNGG 1 cut(s) 182
Bse1I ACTGG 1 cut(s) 1222
BseAI TCCGGA 1 cut(s) 1224
BseCI ATCGAT 1 cut(s) 518
BseDI CCNNGG 4 cut(s) 176, 343, 371, 1195
BseGI GGATG 3 cut(s) 640, 976, 1152
BseLI CCNNNNNNNGG 1 cut(s) 182
BseNI ACTGG 1 cut(s) 1222
BseRI GAGGAG 1 cut(s) 1223
BseXI GCAGC 5 cut(s) 208, 230, 259, 841, 863
BseYI CCCAGC 1 cut(s) 473
Bsh1236I CGCG 1 cut(s) 870
Bsh1285I CGRYCG 1 cut(s) 798
BshFI GGCC 2 cut(s) 676, 1262
BshVI ATCGAT 1 cut(s) 518
BsiEI CGRYCG 1 cut(s) 798
BsiHKCI CYCGRG 1 cut(s) 206
BsiSI CCGG 1 cut(s) 1225
BslFI GGGAC 2 cut(s) 490, 1256
BslI CCNNNNNNNGG 1 cut(s) 182
BsmAI GTCTC 4 cut(s) 203, 296, 1001, 1050
BsmBI CGTCTC 2 cut(s) 203, 296
BsmFI GGGAC 2 cut(s) 490, 1256
BsmI GAATGC 1 cut(s) 277
BsnI GGCC 2 cut(s) 676, 1262
Bso31I GGTCTC 1 cut(s) 1001
BsoBI CYCGRG 1 cut(s) 206
Bsp119I TTCGAA 2 cut(s) 119, 681
Bsp13I TCCGGA 1 cut(s) 1224
Bsp1407I TGTACA 1 cut(s) 1149
Bsp143I GATC 6 cut(s) 30, 76, 795, 988, 1027, 1255
Bsp19I CCATGG 1 cut(s) 343
BspACI CCGC 4 cut(s) 428, 868, 1172, 1230
BspANI GGCC 2 cut(s) 676, 1262
BspDI ATCGAT 1 cut(s) 518
BspEI TCCGGA 1 cut(s) 1224
BspFNI CGCG 1 cut(s) 870
BspLI GGNNCC 3 cut(s) 621, 1193, 1212
BspPI GGATC 1 cut(s) 38
BspT104I TTCGAA 2 cut(s) 119, 681
BspTNI GGTCTC 1 cut(s) 1001
BsrGI TGTACA 1 cut(s) 1149
BsrI ACTGG 1 cut(s) 1222
BssECI CCNNGG 4 cut(s) 176, 343, 371, 1195
BssMI GATC 6 cut(s) 30, 76, 795, 988, 1027, 1255
BssT1I CCWWGG 3 cut(s) 176, 343, 371
Bst4CI ACNGT 3 cut(s) 100, 451, 1270
Bst6I CTCTTC 2 cut(s) 903, 975
BstAPI GCANNNNNTGC 2 cut(s) 563, 632
BstAUI TGTACA 1 cut(s) 1149
BstBI TTCGAA 2 cut(s) 119, 681
BstC8I GCNNGC 1 cut(s) 194
BstDEI CTNAG 1 cut(s) 954
BstDSI CCRYGG 1 cut(s) 343
BstF5I GGATG 3 cut(s) 640, 976, 1152
BstFNI CGCG 1 cut(s) 870
BstKTI GATC 6 cut(s) 33, 79, 798, 991, 1030, 1258
BstMAI GTCTC 4 cut(s) 203, 296, 1001, 1050
BstMBI GATC 6 cut(s) 30, 76, 795, 988, 1027, 1255
BstMCI CGRYCG 1 cut(s) 798
BstMWI GCNNNNNNNGC 4 cut(s) 563, 632, 848, 860
BstSFI CTRYAG 1 cut(s) 1063
BstUI CGCG 1 cut(s) 870
BstV1I GCAGC 5 cut(s) 208, 230, 259, 841, 863
BstV2I GAAGAC 1 cut(s) 947
BstX2I RGATCY 1 cut(s) 30
BstYI RGATCY 1 cut(s) 30
Bsu15I ATCGAT 1 cut(s) 518
BsuI GTATCC 1 cut(s) 583
BsuRI GGCC 2 cut(s) 676, 1262
BsuTUI ATCGAT 1 cut(s) 518
BtgI CCRYGG 1 cut(s) 343
BtsCI GGATG 3 cut(s) 640, 976, 1152
BtsI GCAGTG 2 cut(s) 187, 1294
BtsIMutI CAGTG 3 cut(s) 187, 1152, 1294
Cac8I GCNNGC 1 cut(s) 194
Cfr13I GGNCC 4 cut(s) 368, 674, 1100, 1227
ClaI ATCGAT 1 cut(s) 518
CpoI CGGWCCG 1 cut(s) 1227
CseI GACGC 2 cut(s) 185, 224
Csp6I GTAC 2 cut(s) 361, 1150
CspI CGGWCCG 1 cut(s) 1227
CviAII CATG 7 cut(s) 331, 344, 558, 746, 860, 929, 1111
CviQI GTAC 2 cut(s) 361, 1150
DdeI CTNAG 1 cut(s) 954
DpnI GATC 6 cut(s) 32, 78, 797, 990, 1029, 1257
DpnII GATC 6 cut(s) 30, 76, 795, 988, 1027, 1255
DrdI GACNNNNNNGTC 2 cut(s) 449, 1042
DseDI GACNNNNNNGTC 2 cut(s) 449, 1042
Eam1104I CTCTTC 2 cut(s) 903, 975
EarI CTCTTC 2 cut(s) 903, 975
Eco130I CCWWGG 3 cut(s) 176, 343, 371
Eco31I GGTCTC 1 cut(s) 1001
Eco47I GGWCC 3 cut(s) 368, 1100, 1227
Eco57I CTGAAG 1 cut(s) 1296
Eco88I CYCGRG 1 cut(s) 206
EcoT14I CCWWGG 3 cut(s) 176, 343, 371
EcoT22I ATGCAT 1 cut(s) 319
ErhI CCWWGG 3 cut(s) 176, 343, 371
Esp3I CGTCTC 2 cut(s) 203, 296
FaeI CATG 7 cut(s) 334, 347, 561, 749, 863, 932, 1114
FalI AAGNNNNNCTT 2 cut(s) 773, 805
FaqI GGGAC 2 cut(s) 490, 1256
FatI CATG 7 cut(s) 330, 343, 557, 745, 859, 928, 1110
FbaI TGATCA 3 cut(s) 76, 988, 1255
FblI GTMKAC 1 cut(s) 933
Fnu4HI GCNGC 5 cut(s) 219, 222, 248, 852, 855
FokI GGATG 3 cut(s) 627, 983, 1139
Fsp4HI GCNGC 5 cut(s) 219, 222, 248, 852, 855
FspBI CTAG 3 cut(s) 1055, 1302, 1321
GluI GCNGC 5 cut(s) 219, 222, 248, 852, 855
GsaI CCCAGC 1 cut(s) 477
GsuI CTGGAG 2 cut(s) 402, 1239
HaeIII GGCC 2 cut(s) 676, 1262
HapII CCGG 1 cut(s) 1225
HgaI GACGC 2 cut(s) 185, 224
Hin1II CATG 7 cut(s) 334, 347, 561, 749, 863, 932, 1114
HincII GTYRAC 1 cut(s) 919
HindII GTYRAC 1 cut(s) 919
HindIII AAGCTT 1 cut(s) 820
HpaII CCGG 1 cut(s) 1225
HphI GGTGA 3 cut(s) 76, 103, 1006
Hpy166II GTNNAC 3 cut(s) 919, 934, 1150
Hpy188I TCNGA 6 cut(s) 73, 300, 324, 442, 540, 586
Hpy188III TCNNGA 7 cut(s) 206, 419, 434, 528, 790, 1055, 1225
Hpy8I GTNNAC 3 cut(s) 919, 934, 1150
Hpy99I CGWCG 2 cut(s) 95, 893
HpyAV CCTTC 3 cut(s) 547, 760, 1064
HpyCH4III ACNGT 3 cut(s) 100, 451, 1270
HpyCH4IV ACGT 2 cut(s) 44, 888
HpyCH4V TGCA 6 cut(s) 65, 153, 192, 263, 317, 626
HpyF10VI GCNNNNNNNGC 4 cut(s) 563, 632, 848, 860
HpyF3I CTNAG 1 cut(s) 954
HpySE526I ACGT 2 cut(s) 44, 888
Hsp92II CATG 7 cut(s) 334, 347, 561, 749, 863, 932, 1114
Kpn2I TCCGGA 1 cut(s) 1224
Ksp22I TGATCA 3 cut(s) 76, 988, 1255
Kzo9I GATC 6 cut(s) 30, 76, 795, 988, 1027, 1255
LmnI GCTCC 6 cut(s) 178, 229, 421, 625, 1191, 1210
Lsp1109I GCAGC 5 cut(s) 208, 230, 259, 841, 863
LweI GCATC 5 cut(s) 74, 162, 304, 460, 1173
MaeI CTAG 3 cut(s) 1055, 1302, 1321
MaeII ACGT 2 cut(s) 44, 888
MaeIII GTNAC 5 cut(s) 15, 185, 395, 994, 1304
MalI GATC 6 cut(s) 32, 78, 797, 990, 1029, 1257
MboI GATC 6 cut(s) 30, 76, 795, 988, 1027, 1255
MflI RGATCY 1 cut(s) 30
MluCI AATT 5 cut(s) 80, 121, 228, 239, 701
MlyI GAGTC 6 cut(s) 122, 319, 437, 446, 914, 1230
MmeI TCCRAC 4 cut(s) 8, 347, 518, 668
MnlI CCTC 9 cut(s) 98, 580, 691, 884, 1015, 1051, 1201, 1205, 1309
Mph1103I ATGCAT 1 cut(s) 319
MroI TCCGGA 1 cut(s) 1224
MseI TTAA 2 cut(s) 11, 741
MslI CAYNNNNRTG 2 cut(s) 1157, 1181
MspA1I CMGCKG 2 cut(s) 221, 854
MspI CCGG 1 cut(s) 1225
Mva1269I GAATGC 1 cut(s) 277
MvnI CGCG 1 cut(s) 870
MwoI GCNNNNNNNGC 4 cut(s) 563, 632, 848, 860
NcoI CCATGG 1 cut(s) 343
NdeII GATC 6 cut(s) 30, 76, 795, 988, 1027, 1255
NlaIII CATG 7 cut(s) 334, 347, 561, 749, 863, 932, 1114
NlaIV GGNNCC 3 cut(s) 621, 1193, 1212
NmeAIII GCCGAG 1 cut(s) 110
NmuCI GTSAC 3 cut(s) 185, 994, 1304
NsiI ATGCAT 1 cut(s) 319
NspV TTCGAA 2 cut(s) 119, 681
PcsI WCGNNNNNNNCGW 2 cut(s) 41, 678
PctI GAATGC 1 cut(s) 277
PfeI GAWTC 4 cut(s) 116, 515, 690, 730
PkrI GCNGC 5 cut(s) 220, 223, 249, 853, 856
Ple19I CGATCG 1 cut(s) 798
PleI GAGTC 6 cut(s) 122, 319, 437, 445, 914, 1229
PpsI GAGTC 6 cut(s) 122, 319, 437, 445, 914, 1229
PsiI TTATAA 1 cut(s) 339
PspFI CCCAGC 1 cut(s) 473
PspN4I GGNNCC 3 cut(s) 621, 1193, 1212
PspPI GGNCC 4 cut(s) 368, 674, 1100, 1227
PsuI RGATCY 1 cut(s) 30
PvuI CGATCG 1 cut(s) 798
PvuII CAGCTG 2 cut(s) 221, 854
RsaI GTAC 2 cut(s) 362, 1151
RsaNI GTAC 2 cut(s) 361, 1150
RseI CAYNNNNRTG 2 cut(s) 1157, 1181
Rsr2I CGGWCCG 1 cut(s) 1227
RsrII CGGWCCG 1 cut(s) 1227
SaqAI TTAA 2 cut(s) 11, 741
SatI GCNGC 5 cut(s) 219, 222, 248, 852, 855
Sau3AI GATC 6 cut(s) 30, 76, 795, 988, 1027, 1255
Sau96I GGNCC 4 cut(s) 368, 674, 1100, 1227
ScaI AGTACT 1 cut(s) 362
SchI GAGTC 6 cut(s) 122, 319, 437, 446, 914, 1230
SfaNI GCATC 5 cut(s) 74, 162, 304, 460, 1173
SfcI CTRYAG 1 cut(s) 1063
SfuI TTCGAA 2 cut(s) 119, 681
SinI GGWCC 3 cut(s) 368, 1100, 1227
SmiMI CAYNNNNRTG 2 cut(s) 1157, 1181
SmlI CTYRAG 1 cut(s) 434
SmoI CTYRAG 1 cut(s) 434
Sse9I AATT 5 cut(s) 80, 121, 228, 239, 701
SsiI CCGC 4 cut(s) 428, 868, 1172, 1230
SspMI CTAG 3 cut(s) 1055, 1302, 1321
StyI CCWWGG 3 cut(s) 176, 343, 371
TaaI ACNGT 3 cut(s) 100, 451, 1270
TaiI ACGT 2 cut(s) 47, 891
TaqI TCGA 6 cut(s) 90, 119, 126, 147, 518, 681
TaqII GACCGA 1 cut(s) 1187
TasI AATT 5 cut(s) 80, 121, 228, 239, 701
TatI WGTACW 2 cut(s) 360, 1149
TfiI GAWTC 4 cut(s) 116, 515, 690, 730
Tru1I TTAA 2 cut(s) 11, 741
Tru9I TTAA 2 cut(s) 11, 741
TscAI CASTG 3 cut(s) 194, 1152, 1294
TseFI GTSAC 3 cut(s) 185, 994, 1304
TseI GCWGC 5 cut(s) 218, 221, 247, 851, 854
Tsp45I GTSAC 3 cut(s) 185, 994, 1304
TspDTI ATGAA 5 cut(s) 822, 917, 993, 1099, 1296
TspGWI ACGGA 4 cut(s) 108, 1113, 1204, 1232
TspRI CASTG 3 cut(s) 194, 1152, 1294
VpaK11BI GGWCC 3 cut(s) 368, 1100, 1227
XapI RAATTY 2 cut(s) 121, 701
XbaI TCTAGA 1 cut(s) 1054
XmiI GTMKAC 1 cut(s) 933
XspI CTAG 3 cut(s) 1055, 1302, 1321
ZrmI AGTACT 1 cut(s) 362
Zsp2I ATGCAT 1 cut(s) 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.