Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0006094

Physical Location & Seq

Genomic Coordinates Forward (+)

20140636 .. 20145190

Gene Structure 4555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001751

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGCGCGGCTTAACGGTCTGGTTCTGGGCGCTGACGTCAGCAGCAGCTATATGGGGGGCGGCAGTGTCGTCATCGTCATCGTCGTGGGTGGCGGACGGGACGGTGCTGGAGCTGGACGATTCCAACTTCGAATCGGCGATTTCAGCGCTGGACTTGGTCCTGGTTGACTTCCACGCCCCCTGGTGCGGCCACTGCAAGCGTCTCTCTCCTCAGTTGGATGCGGCTGCGCCGGTGCTTGCTTCATTGAAGAACCCAATAGTGATAGCAAAAGTTAATGCTGACAAGTATACATCTCTTGCTCGCAAATATGGAGTCGATGGATATCCTACATTGAAGCTCTTTATACATGGTGTCCCCCAAGAGTATAAAGGGCCGAGGAAAGCCGATTTGCTTGTTAGGTATCTCAAGAAATTTGCAGCTCCCGATGTTACCCTACTTGATTCAGACTCTGCTGTTGCTGATTTTGTTGGAGCAGCAGGCACGTTCTTCCCTATTTATGTTGGTTTTGGCTTAGATGAGTCCGTGATATCTAAGTTGGCATTGAAGTACAAAAGGAAGGCCTGGTTTTCTGTTGCAAAGGATTTCTCTGAGGATCTAATGATGTTGTATGATTTTGACAAGGTTCCTGCTCTGGTATCCCTTCATCCAAGTTGCGATGAGCGCCACGTCTTTTACGGCCCCTTTGAAGAGGAATTTTTGGAAGATTTCATAAAACAAAGTTTGTTACCTTTGGCCATGCCCATCAACTATGACACATTAAAATCATTGGAGGATGATGTAAGAAAAATTGTGTTGACAATTGTGGAGGATGAGAATGAAGAGAAGTCAAAGAACTTGATCAAGATTTTGAAATCTGCTGCATCCGCTAATCGAGACCTTGTATTTGGTTATGTCGGGATCAAACAATGGGAAGATTTTGCTGAAACATTCGGAGCGAACAAGAAGACAAAATTACCGAAAATGGTTGTCTGGGATAGAATGGAGGAGTACTTAACAGTCAACGGCTCAGAAAGCATTGATGGGGAAGATCAGGCATCTCAAGTCTCGCAGTTTCTCGAAGGATATAAGGAAGGAAGAACGATTAAAGAAAAAGTTGGTGGCAGTGTGTCGCTTACTGCCTTTATATCTTCATTTATTGGGATTGGAACTGTGTATATATTAGTTTTTGTGGTAGCGACGATAATTCTTATTAGAAAAGCCACTGAGGAAGAACCTCGCGCTACAAGCTCTACTGCCGCCACTGAAAGCAGCGAGCATAAAGCTGGAGAAAAGGAAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005911 GO:0006457 GO:0006950 GO:0008150 GO:0009505 GO:0009506 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016860 GO:0016864 GO:0030054 GO:0030312 GO:0031090 GO:0033554 GO:0034976 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055044 GO:0071944 GO:0098588 GO:0098805 GO:0140096

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Thioredoxin Thioredoxin_6

Protein Analysis

427

Amino Acids

47.08

Weight (kDa)

5.08

Isoelectric Point (pI)

33.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	35 - 137	1.9e-25	Thioredoxin
Thioredoxin_6	PF13848	195 - 352	1.8e-10	Thioredoxin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35620
fragaria_vesca	FvH4_5g30970 FvH4_5g30970
malus_domestica	MD08G1220700.v1.1 MD09G1249700.v1.1 MD15G1411400.v1.1
prunus_persica	Prupe.1G557400_v2.0.a1
pyrus_communis	pycom08g19150 pycom15g36620
rosa_chinensis	RchiOBHm_Chr7g0226321 RchiOBHm_Chr7g0226361
rosa_laevigata	RLG00000001746 RLG00000001751
rosa_multiflora	Rmu_sc0001044.1_g000026 Rmu_sc0004322.1_g000024 Rmu_sc0004426.1_g000003 Rmu_sc0004426.1_g000004
rosa_roxburghii	Rroxscaffold_3G00233030 Rroxscaffold_5G00366610
rosa_rugosa	Rorug07G0236600
rosa_samantha	Rh7AG383600 Rh7BG370400 Rh7CG403200 Rh7DG382000
rosa_wichuraiana	Rw7G032130 Rw7G032150 Rw7G032210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	38
AccI	GTMKAC	1 cut(s)	287
AccII	CGCG	2 cut(s)	6, 1218
AciI	CCGC	7 cut(s)	6, 59, 92, 186, 221, 864, 1236
AclWI	GGATC	2 cut(s)	600, 905
AcoI	YGGCCR	2 cut(s)	187, 732
AcsI	RAATTY	2 cut(s)	410, 692
AcyI	GRCGYC	1 cut(s)	35
AfaI	GTAC	2 cut(s)	548, 989
AfeI	AGCGCT	1 cut(s)	147
AfiI	CCNNNNNNNGG	1 cut(s)	185
AgsI	TTSAA	5 cut(s)	247, 334, 544, 686, 850
AjiI	CACGTC	1 cut(s)	667
AjnI	CCWGG	3 cut(s)	159, 179, 560
AluBI	AGCT	6 cut(s)	47, 112, 337, 419, 1227, 1262
AluI	AGCT	6 cut(s)	47, 112, 337, 419, 1227, 1262
Alw26I	GTCTC	3 cut(s)	206, 867, 1048
AlwI	GGATC	2 cut(s)	600, 905
AlwNI	CAGNNNCTG	1 cut(s)	449
Aor51HI	AGCGCT	1 cut(s)	147
AoxI	GGCC	5 cut(s)	187, 371, 558, 676, 732
ApeKI	GCWGC	7 cut(s)	41, 44, 224, 416, 473, 857, 1248
ApoI	RAATTY	2 cut(s)	410, 692
ArsI	GACNNNNNNTTYG	4 cut(s)	297, 329, 866, 898
AspLEI	GCGC	6 cut(s)	6, 31, 148, 229, 663, 1220
AspS9I	GGNCC	3 cut(s)	157, 371, 677
AsuII	TTCGAA	1 cut(s)	129
AvaII	GGWCC	1 cut(s)	157
BalI	TGGCCA	1 cut(s)	734
BbsI	GAAGAC	1 cut(s)	950
BbvI	GCAGC	7 cut(s)	53, 56, 211, 428, 485, 844, 1260
BccI	CCATC	3 cut(s)	311, 749, 1013
BceAI	ACGGC	2 cut(s)	691, 1018
BciT130I	CCWGG	3 cut(s)	161, 181, 562
BciVI	GTATCC	1 cut(s)	646
BclI	TGATCA	1 cut(s)	837
BcoDI	GTCTC	3 cut(s)	206, 867, 1048
BfoI	RGCGCY	3 cut(s)	32, 149, 664
BfuI	GTATCC	1 cut(s)	646
BmcAI	AGTACT	1 cut(s)	989
Bme1390I	CCNGG	3 cut(s)	161, 181, 562
Bme18I	GGWCC	1 cut(s)	157
BmgBI	CACGTC	1 cut(s)	667
BmgT120I	GGNCC	3 cut(s)	157, 371, 677
BmiI	GGNNCC	2 cut(s)	624, 679
BmrFI	CCNGG	3 cut(s)	161, 181, 562
BmsI	GCATC	3 cut(s)	208, 869, 1043
BpiI	GAAGAC	1 cut(s)	950
BpmI	CTGGAG	1 cut(s)	128
Bpu14I	TTCGAA	1 cut(s)	129
BpuEI	CTTGAG	2 cut(s)	389, 1023
BsaBI	GATNNNNATC	1 cut(s)	321
BsaHI	GRCGYC	1 cut(s)	35
BsaI	GGTCTC	1 cut(s)	867
BsaJI	CCNNGG	2 cut(s)	179, 374
Bsc4I	CCNNNNNNNGG	1 cut(s)	185
Bse118I	RCCGGY	1 cut(s)	229
Bse8I	GATNNNNATC	1 cut(s)	321
BseBI	CCWGG	3 cut(s)	161, 181, 562
BseDI	CCNNGG	2 cut(s)	179, 374
BseGI	GGATG	5 cut(s)	223, 643, 778, 814, 860
BseJI	GATNNNNATC	1 cut(s)	321
BseLI	CCNNNNNNNGG	1 cut(s)	185
BseMII	CTCAG	4 cut(s)	224, 579, 1020, 1194
BseRI	GAGGAG	2 cut(s)	198, 998
BseXI	GCAGC	7 cut(s)	53, 56, 211, 428, 485, 844, 1260
Bsh1236I	CGCG	2 cut(s)	6, 1218
BshFI	GGCC	5 cut(s)	189, 373, 560, 678, 734
BsiSI	CCGG	1 cut(s)	230
BslFI	GGGAC	2 cut(s)	112, 338
BslI	CCNNNNNNNGG	1 cut(s)	185
BsmAI	GTCTC	3 cut(s)	206, 867, 1048
BsmBI	CGTCTC	1 cut(s)	206
BsmFI	GGGAC	2 cut(s)	112, 338
BsnI	GGCC	5 cut(s)	189, 373, 560, 678, 734
Bso31I	GGTCTC	1 cut(s)	867
Bsp119I	TTCGAA	1 cut(s)	129
Bsp143I	GATC	4 cut(s)	592, 837, 897, 1027
BspACI	CCGC	7 cut(s)	6, 59, 92, 186, 221, 864, 1236
BspANI	GGCC	5 cut(s)	189, 373, 560, 678, 734
BspCNI	CTCAG	4 cut(s)	223, 580, 1019, 1195
BspFNI	CGCG	2 cut(s)	6, 1218
BspLI	GGNNCC	2 cut(s)	624, 679
BspPI	GGATC	2 cut(s)	600, 905
BspT104I	TTCGAA	1 cut(s)	129
BspTNI	GGTCTC	1 cut(s)	867
BsrFI	RCCGGY	1 cut(s)	229
BssAI	RCCGGY	1 cut(s)	229
BssECI	CCNNGG	2 cut(s)	179, 374
BssMI	GATC	4 cut(s)	592, 837, 897, 1027
BssNAI	GTATAC	1 cut(s)	288
BssNI	GRCGYC	1 cut(s)	35
Bst1107I	GTATAC	1 cut(s)	288
Bst2UI	CCWGG	3 cut(s)	161, 181, 562
Bst4CI	ACNGT	4 cut(s)	16, 103, 997, 1150
Bst6I	CTCTTC	2 cut(s)	681, 813
BstACI	GRCGYC	1 cut(s)	35
BstBI	TTCGAA	1 cut(s)	129
BstC8I	GCNNGC	5 cut(s)	197, 237, 301, 478, 1253
BstDEI	CTNAG	6 cut(s)	210, 511, 531, 588, 1006, 1203
BstF5I	GGATG	5 cut(s)	223, 643, 778, 814, 860
BstFNI	CGCG	2 cut(s)	6, 1218
BstH2I	RGCGCY	3 cut(s)	32, 149, 664
BstHHI	GCGC	6 cut(s)	6, 31, 148, 229, 663, 1220
BstKTI	GATC	4 cut(s)	595, 840, 900, 1030
BstMAI	GTCTC	3 cut(s)	206, 867, 1048
BstMBI	GATC	4 cut(s)	592, 837, 897, 1027
BstMWI	GCNNNNNNNGC	6 cut(s)	143, 192, 660, 863, 1011, 1224
BstNI	CCWGG	3 cut(s)	161, 181, 562
BstSCI	CCNGG	3 cut(s)	159, 179, 560
BstUI	CGCG	2 cut(s)	6, 1218
BstV1I	GCAGC	7 cut(s)	53, 56, 211, 428, 485, 844, 1260
BstV2I	GAAGAC	1 cut(s)	950
BstX2I	RGATCY	1 cut(s)	592
BstYI	RGATCY	1 cut(s)	592
BstZ17I	GTATAC	1 cut(s)	288
BsuI	GTATCC	1 cut(s)	646
BsuRI	GGCC	5 cut(s)	189, 373, 560, 678, 734
BtgZI	GCGATG	1 cut(s)	669
BtrI	CACGTC	1 cut(s)	667
BtsCI	GGATG	5 cut(s)	223, 643, 778, 814, 860
BtsI	GCAGTG	3 cut(s)	69, 190, 1108
BtsIMutI	CAGTG	5 cut(s)	69, 190, 1108, 1200, 1239
Cac8I	GCNNGC	5 cut(s)	197, 237, 301, 478, 1253
CaiI	CAGNNNCTG	1 cut(s)	449
CfoI	GCGC	6 cut(s)	6, 31, 148, 229, 663, 1220
Cfr10I	RCCGGY	1 cut(s)	229
Cfr13I	GGNCC	3 cut(s)	157, 371, 677
CseI	GACGC	1 cut(s)	188
Csp6I	GTAC	2 cut(s)	547, 988
CviAII	CATG	2 cut(s)	347, 736
CviQI	GTAC	2 cut(s)	547, 988
DdeI	CTNAG	6 cut(s)	210, 511, 531, 588, 1006, 1203
DpnI	GATC	4 cut(s)	594, 839, 899, 1029
DpnII	GATC	4 cut(s)	592, 837, 897, 1027
EaeI	YGGCCR	2 cut(s)	187, 732
Eam1104I	CTCTTC	2 cut(s)	681, 813
EarI	CTCTTC	2 cut(s)	681, 813
EciI	GGCGGA	1 cut(s)	107
Eco147I	AGGCCT	1 cut(s)	560
Eco31I	GGTCTC	1 cut(s)	867
Eco32I	GATATC	2 cut(s)	323, 528
Eco47I	GGWCC	1 cut(s)	157
Eco47III	AGCGCT	1 cut(s)	147
EcoRII	CCWGG	3 cut(s)	159, 179, 560
EcoRV	GATATC	2 cut(s)	323, 528
Esp3I	CGTCTC	1 cut(s)	206
FaeI	CATG	2 cut(s)	350, 739
FaqI	GGGAC	2 cut(s)	112, 338
FatI	CATG	2 cut(s)	346, 735
FbaI	TGATCA	1 cut(s)	837
FblI	GTMKAC	1 cut(s)	287
FokI	GGATG	5 cut(s)	230, 630, 785, 821, 847
GlaI	GCGC	6 cut(s)	5, 30, 147, 228, 662, 1219
GsuI	CTGGAG	1 cut(s)	128
HaeII	RGCGCY	3 cut(s)	32, 149, 664
HaeIII	GGCC	5 cut(s)	189, 373, 560, 678, 734
HapII	CCGG	1 cut(s)	230
HgaI	GACGC	1 cut(s)	188
HhaI	GCGC	6 cut(s)	6, 31, 148, 229, 663, 1220
Hin1I	GRCGYC	1 cut(s)	35
Hin1II	CATG	2 cut(s)	350, 739
Hin6I	GCGC	6 cut(s)	4, 29, 146, 227, 661, 1218
HinP1I	GCGC	6 cut(s)	4, 29, 146, 227, 661, 1218
HincII	GTYRAC	3 cut(s)	166, 795, 1000
HindII	GTYRAC	3 cut(s)	166, 795, 1000
HinfI	GANTC	6 cut(s)	119, 131, 312, 440, 446, 518
HpaII	CCGG	1 cut(s)	230
Hpy166II	GTNNAC	4 cut(s)	166, 288, 795, 1000
Hpy188I	TCNGA	4 cut(s)	445, 589, 932, 1009
Hpy188III	TCNNGA	6 cut(s)	406, 422, 841, 872, 895, 1055
Hpy8I	GTNNAC	4 cut(s)	166, 288, 795, 1000
Hpy99I	CGWCG	2 cut(s)	85, 1180
HpyAV	CCTTC	4 cut(s)	550, 650, 1052, 1064
HpyCH4III	ACNGT	4 cut(s)	16, 103, 997, 1150
HpyCH4IV	ACGT	3 cut(s)	35, 482, 666
HpyCH4V	TGCA	4 cut(s)	195, 416, 575, 860
HpyF10VI	GCNNNNNNNGC	6 cut(s)	143, 192, 660, 863, 1011, 1224
HpyF3I	CTNAG	6 cut(s)	210, 511, 531, 588, 1006, 1203
HpySE526I	ACGT	3 cut(s)	35, 482, 666
Hsp92I	GRCGYC	1 cut(s)	35
Hsp92II	CATG	2 cut(s)	350, 739
HspAI	GCGC	6 cut(s)	4, 29, 146, 227, 661, 1218
Ksp22I	TGATCA	1 cut(s)	837
Kzo9I	GATC	4 cut(s)	592, 837, 897, 1027
LmnI	GCTCC	4 cut(s)	109, 424, 470, 932
Lsp1109I	GCAGC	7 cut(s)	53, 56, 211, 428, 485, 844, 1260
LweI	GCATC	3 cut(s)	208, 869, 1043
MaeII	ACGT	3 cut(s)	35, 482, 666
MaeIII	GTNAC	2 cut(s)	427, 723
MalI	GATC	4 cut(s)	594, 839, 899, 1029
MboI	GATC	4 cut(s)	592, 837, 897, 1027
MfeI	CAATTG	1 cut(s)	798
MflI	RGATCY	1 cut(s)	592
MlsI	TGGCCA	1 cut(s)	734
MluCI	AATT	6 cut(s)	410, 692, 786, 798, 950, 1182
MluNI	TGGCCA	1 cut(s)	734
MlyI	GAGTC	3 cut(s)	321, 440, 527
MmeI	TCCRAC	3 cut(s)	147, 195, 448
MnlI	CCTC	9 cut(s)	219, 369, 583, 682, 763, 799, 976, 1198, 1224
Mox20I	TGGCCA	1 cut(s)	734
MscI	TGGCCA	1 cut(s)	734
MseI	TTAA	5 cut(s)	11, 273, 758, 992, 1083
MslI	CAYNNNNRTG	1 cut(s)	82
Msp20I	TGGCCA	1 cut(s)	734
MspI	CCGG	1 cut(s)	230
MspR9I	CCNGG	3 cut(s)	161, 181, 562
MunI	CAATTG	1 cut(s)	798
MvaI	CCWGG	3 cut(s)	161, 181, 562
MvnI	CGCG	2 cut(s)	6, 1218
MwoI	GCNNNNNNNGC	6 cut(s)	143, 192, 660, 863, 1011, 1224
NdeII	GATC	4 cut(s)	592, 837, 897, 1027
NlaIII	CATG	2 cut(s)	350, 739
NlaIV	GGNNCC	2 cut(s)	624, 679
NmeAIII	GCCGAG	1 cut(s)	399
NspV	TTCGAA	1 cut(s)	129
PceI	AGGCCT	1 cut(s)	560
PcsI	WCGNNNNNNNCGW	1 cut(s)	80
PfeI	GAWTC	3 cut(s)	119, 131, 440
PflFI	GACNNNGTC	1 cut(s)	155
PleI	GAGTC	3 cut(s)	320, 440, 526
PpsI	GAGTC	3 cut(s)	320, 440, 526
Psp6I	CCWGG	3 cut(s)	159, 179, 560
PspGI	CCWGG	3 cut(s)	159, 179, 560
PspN4I	GGNNCC	2 cut(s)	624, 679
PspPI	GGNCC	3 cut(s)	157, 371, 677
PstNI	CAGNNNCTG	1 cut(s)	449
PsuI	RGATCY	1 cut(s)	592
PsyI	GACNNNGTC	1 cut(s)	155
RsaI	GTAC	2 cut(s)	548, 989
RsaNI	GTAC	2 cut(s)	547, 988
RseI	CAYNNNNRTG	1 cut(s)	82
SaqAI	TTAA	5 cut(s)	11, 273, 758, 992, 1083
Sau3AI	GATC	4 cut(s)	592, 837, 897, 1027
Sau96I	GGNCC	3 cut(s)	157, 371, 677
ScaI	AGTACT	1 cut(s)	989
SchI	GAGTC	3 cut(s)	321, 440, 527
ScrFI	CCNGG	3 cut(s)	161, 181, 562
SfaNI	GCATC	3 cut(s)	208, 869, 1043
SfuI	TTCGAA	1 cut(s)	129
SgrAI	CRCCGGYG	1 cut(s)	229
SinI	GGWCC	1 cut(s)	157
SmiMI	CAYNNNNRTG	1 cut(s)	82
SmlI	CTYRAG	2 cut(s)	404, 1038
SmoI	CTYRAG	2 cut(s)	404, 1038
Sse9I	AATT	6 cut(s)	410, 692, 786, 798, 950, 1182
SseBI	AGGCCT	1 cut(s)	560
SsiI	CCGC	7 cut(s)	6, 59, 92, 186, 221, 864, 1236
StuI	AGGCCT	1 cut(s)	560
StyD4I	CCNGG	3 cut(s)	159, 179, 560
TaaI	ACNGT	4 cut(s)	16, 103, 997, 1150
TaiI	ACGT	3 cut(s)	38, 485, 669
TaqI	TCGA	4 cut(s)	129, 315, 871, 1056
TasI	AATT	6 cut(s)	410, 692, 786, 798, 950, 1182
TatI	WGTACW	2 cut(s)	546, 987
TauI	GCSGC	5 cut(s)	9, 62, 189, 224, 1238
TfiI	GAWTC	3 cut(s)	119, 131, 440
Tru1I	TTAA	5 cut(s)	11, 273, 758, 992, 1083
Tru9I	TTAA	5 cut(s)	11, 273, 758, 992, 1083
TscAI	CASTG	5 cut(s)	69, 197, 1108, 1207, 1246
TseI	GCWGC	7 cut(s)	41, 44, 224, 416, 473, 857, 1248
TspDTI	ATGAA	5 cut(s)	231, 632, 697, 831, 1119
TspGWI	ACGGA	1 cut(s)	511
TspRI	CASTG	5 cut(s)	69, 197, 1108, 1207, 1246
Tth111I	GACNNNGTC	1 cut(s)	155
VpaK11BI	GGWCC	1 cut(s)	157
XapI	RAATTY	2 cut(s)	410, 692
XmiI	GTMKAC	1 cut(s)	287
ZraI	GACGTC	1 cut(s)	36
ZrmI	AGTACT	1 cut(s)	989

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.