Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006094

Physical Location & Seq

Genomic Coordinates Reverse (-)

49446348 .. 49451205

Gene Structure 4858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20271

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGCGCGGCTTAACGGTGTGGTTCTGGGCGCTGACGTCAGCAGCAGCAGCTATATTGGGGGCGGCAGCGTCGTCATCGTCGTCGTGGGTGGCGGACGGGACGGTGCTGGAGCTGGACGATTCCAACTTCGAATCGGCGATTTCAGCGCTGGACTTGGTCTTGGTTGACTTCCACGCCCCCTGGTGCGGCCACTGCAAGCGTCTCTCTCCTCAGTTGGATGCGGCTGCGCCGGAGCTTGCTTCATTGAAGAACCCAATAGTGATAGCGAAAGTTAATGCTGACAAGTACACATCTCTAGCTCGCAAATATGGAGTCGATGGATATCCTACGCTGAAGCTCTTTATACATGGTGTCCCCCAAGAGTATAAAGGGCCGAGGAAAGCCGATTTGCTTGTTAGTTATCTCAAGAAATTCGCAGCTCCCGATGTTACCCTACTTGATTCAGACTCTGCTGTTGCTGATTTTGTTGGAGCAGCAGGCACATTCTTCCCTGTTTATGTTGGTTTTGGCTTGGATGAGTCCCTGATATCTGAGTTGGGATTGAAGTACAAAAGGAAGGCCTGGTTTTCTGTTGCAAAGGATTTCTCGGAGGATCTAATGATGTTGTATGATTTTGACAAGGTTCCTGCCTTGGTATCCCTTCATCCAAGTTACGATGAGCGCCACGTCTTTTACGGCCCCTTTGAAGAGGAATTTTTGGAAGATTTCATAAAACAAAGTTTGTTACCTTTGGCCATACCCATCAACTATGACACATTAAAATCATTGGACGATGATGAAAGAAAAATTGTGTTGACAATTGTGGAGGATGAGGATGAAGAGAAGTCAAAGAACTTGATCAAGATTTTGAAATCTGCTGCTTCCGCCAATCGAGACCTTGTATTTGGTTATGTCGGGATCAAACAATGGGAAGATTTTGCTGAAACATTCGGAGCGAACAAGAAGACAAAACTACCAAAAATGGTTGTTTGGGATCGAATGGAGGAGTACTTAACAGTCAACGGCTCAGAAAGCATTGACGGGGAAGATCAGGCATCTCAAGTCTCGCAGTTTCTTGAAGGATATAAGGAAGGAAGAACGATTAAAGAAAAAGTTGGTGGCAGTGTGTCGCTTACTGCCTTTATATCTTCATTTATTGGGATTGGAACTGTGTATATATTAGTTTTTGTGGTAGCGACGATAATTCTTATTAGAAAAGCCACTGAGGAAGAACCTCTCAGGGTTGGTAGGGGAGATAAGGTTGATCATGCTACAAGCTCTACTGCCGAGGCTGAAAGCAGTGAGCATAAAGCTGGAGAAAAGGAAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005911 GO:0006457 GO:0006950 GO:0008150 GO:0009505 GO:0009506 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016860 GO:0016864 GO:0030054 GO:0030312 GO:0031090 GO:0033554 GO:0034976 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055044 GO:0071944 GO:0098588 GO:0098805 GO:0140096

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Thioredoxin Thioredoxin_6

Protein Analysis

436

Amino Acids

48.08

Weight (kDa)

4.86

Isoelectric Point (pI)

31.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	35 - 137	3.3e-26	Thioredoxin
Thioredoxin_6	PF13848	195 - 352	1.9e-10	Thioredoxin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35620
fragaria_vesca	FvH4_5g30970 FvH4_5g30970
malus_domestica	MD08G1220700.v1.1 MD09G1249700.v1.1 MD15G1411400.v1.1
prunus_persica	Prupe.1G557400_v2.0.a1
pyrus_communis	pycom08g19150 pycom15g36620
rosa_chinensis	RchiOBHm_Chr7g0226321 RchiOBHm_Chr7g0226361
rosa_laevigata	RLG00000001746 RLG00000001751
rosa_multiflora	Rmu_sc0001044.1_g000026 Rmu_sc0004322.1_g000024 Rmu_sc0004426.1_g000003 Rmu_sc0004426.1_g000004
rosa_roxburghii	Rroxscaffold_3G00233030 Rroxscaffold_5G00366610
rosa_rugosa	Rorug07G0236600
rosa_samantha	Rh7AG383600 Rh7BG370400 Rh7CG403200 Rh7DG382000
rosa_wichuraiana	Rw7G032130 Rw7G032150 Rw7G032210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	38
AccII	CGCG	1 cut(s)	6
AciI	CCGC	6 cut(s)	6, 62, 92, 186, 221, 864
AclWI	GGATC	3 cut(s)	600, 905, 981
AcoI	YGGCCR	2 cut(s)	187, 732
AcsI	RAATTY	2 cut(s)	410, 692
AcuI	CTGAAG	1 cut(s)	353
AcyI	GRCGYC	1 cut(s)	35
AfaI	GTAC	3 cut(s)	287, 548, 989
AfeI	AGCGCT	1 cut(s)	147
AfiI	CCNNNNNNNGG	1 cut(s)	185
AgsI	TTSAA	5 cut(s)	247, 544, 686, 850, 1058
AjiI	CACGTC	1 cut(s)	667
AjnI	CCWGG	2 cut(s)	179, 560
AluBI	AGCT	8 cut(s)	50, 112, 235, 299, 337, 419, 1257, 1292
AluI	AGCT	8 cut(s)	50, 112, 235, 299, 337, 419, 1257, 1292
Alw26I	GTCTC	3 cut(s)	206, 867, 1048
AlwI	GGATC	3 cut(s)	600, 905, 981
AlwNI	CAGNNNCTG	1 cut(s)	449
Aor51HI	AGCGCT	1 cut(s)	147
AoxI	GGCC	5 cut(s)	187, 371, 558, 676, 732
ApeKI	GCWGC	8 cut(s)	41, 44, 47, 65, 224, 416, 473, 857
ApoI	RAATTY	2 cut(s)	410, 692
ArsI	GACNNNNNNTTYG	4 cut(s)	297, 329, 866, 898
AspLEI	GCGC	5 cut(s)	6, 31, 148, 229, 663
AspS9I	GGNCC	2 cut(s)	371, 677
AsuII	TTCGAA	1 cut(s)	129
BalI	TGGCCA	1 cut(s)	734
BbsI	GAAGAC	1 cut(s)	950
BbvI	GCAGC	8 cut(s)	53, 56, 59, 77, 211, 428, 485, 844
BccI	CCATC	2 cut(s)	311, 749
BceAI	ACGGC	2 cut(s)	691, 1018
BciT130I	CCWGG	2 cut(s)	181, 562
BciVI	GTATCC	1 cut(s)	646
BclI	TGATCA	2 cut(s)	837, 1243
BcoDI	GTCTC	3 cut(s)	206, 867, 1048
BfaI	CTAG	1 cut(s)	296
BfoI	RGCGCY	3 cut(s)	32, 149, 664
BfuI	GTATCC	1 cut(s)	646
BmcAI	AGTACT	1 cut(s)	989
Bme1390I	CCNGG	2 cut(s)	181, 562
BmgBI	CACGTC	1 cut(s)	667
BmgT120I	GGNCC	2 cut(s)	371, 677
BmiI	GGNNCC	2 cut(s)	624, 679
BmrFI	CCNGG	2 cut(s)	181, 562
BmsI	GCATC	2 cut(s)	208, 1043
BpiI	GAAGAC	1 cut(s)	950
BpmI	CTGGAG	1 cut(s)	128
Bpu14I	TTCGAA	1 cut(s)	129
BpuEI	CTTGAG	2 cut(s)	389, 1023
BsaBI	GATNNNNATC	1 cut(s)	321
BsaHI	GRCGYC	1 cut(s)	35
BsaI	GGTCTC	1 cut(s)	867
BsaJI	CCNNGG	4 cut(s)	179, 374, 630, 1266
BsaXI	ACNNNNNCTCC	2 cut(s)	1224, 1254
Bsc4I	CCNNNNNNNGG	1 cut(s)	185
Bse8I	GATNNNNATC	1 cut(s)	321
BseBI	CCWGG	2 cut(s)	181, 562
BseDI	CCNNGG	4 cut(s)	179, 374, 630, 1266
BseGI	GGATG	5 cut(s)	223, 520, 643, 814, 820
BseJI	GATNNNNATC	1 cut(s)	321
BseLI	CCNNNNNNNGG	1 cut(s)	185
BseMII	CTCAG	5 cut(s)	224, 522, 1020, 1194, 1231
BseRI	GAGGAG	2 cut(s)	198, 998
BseXI	GCAGC	8 cut(s)	53, 56, 59, 77, 211, 428, 485, 844
Bsh1236I	CGCG	1 cut(s)	6
BshFI	GGCC	5 cut(s)	189, 373, 560, 678, 734
BsiSI	CCGG	1 cut(s)	230
BslFI	GGGAC	3 cut(s)	112, 338, 505
BslI	CCNNNNNNNGG	1 cut(s)	185
BsmAI	GTCTC	3 cut(s)	206, 867, 1048
BsmBI	CGTCTC	1 cut(s)	206
BsmFI	GGGAC	3 cut(s)	112, 338, 505
BsnI	GGCC	5 cut(s)	189, 373, 560, 678, 734
Bso31I	GGTCTC	1 cut(s)	867
Bsp119I	TTCGAA	1 cut(s)	129
Bsp143I	GATC	6 cut(s)	592, 837, 897, 973, 1027, 1243
BspACI	CCGC	6 cut(s)	6, 62, 92, 186, 221, 864
BspANI	GGCC	5 cut(s)	189, 373, 560, 678, 734
BspCNI	CTCAG	5 cut(s)	223, 523, 1019, 1195, 1230
BspFNI	CGCG	1 cut(s)	6
BspLI	GGNNCC	2 cut(s)	624, 679
BspPI	GGATC	3 cut(s)	600, 905, 981
BspT104I	TTCGAA	1 cut(s)	129
BspTNI	GGTCTC	1 cut(s)	867
BssECI	CCNNGG	4 cut(s)	179, 374, 630, 1266
BssMI	GATC	6 cut(s)	592, 837, 897, 973, 1027, 1243
BssNI	GRCGYC	1 cut(s)	35
BssT1I	CCWWGG	1 cut(s)	630
Bst2UI	CCWGG	2 cut(s)	181, 562
Bst4CI	ACNGT	4 cut(s)	16, 103, 997, 1150
Bst6I	CTCTTC	2 cut(s)	681, 813
BstACI	GRCGYC	1 cut(s)	35
BstBI	TTCGAA	1 cut(s)	129
BstC8I	GCNNGC	4 cut(s)	197, 237, 301, 478
BstDEI	CTNAG	5 cut(s)	210, 531, 1006, 1203, 1217
BstF5I	GGATG	5 cut(s)	223, 520, 643, 814, 820
BstFNI	CGCG	1 cut(s)	6
BstH2I	RGCGCY	3 cut(s)	32, 149, 664
BstHHI	GCGC	5 cut(s)	6, 31, 148, 229, 663
BstKTI	GATC	6 cut(s)	595, 840, 900, 976, 1030, 1246
BstMAI	GTCTC	3 cut(s)	206, 867, 1048
BstMBI	GATC	6 cut(s)	592, 837, 897, 973, 1027, 1243
BstMWI	GCNNNNNNNGC	5 cut(s)	47, 143, 192, 863, 1011
BstNI	CCWGG	2 cut(s)	181, 562
BstSCI	CCNGG	2 cut(s)	179, 560
BstUI	CGCG	1 cut(s)	6
BstV1I	GCAGC	8 cut(s)	53, 56, 59, 77, 211, 428, 485, 844
BstV2I	GAAGAC	1 cut(s)	950
BstX2I	RGATCY	1 cut(s)	592
BstYI	RGATCY	1 cut(s)	592
BsuI	GTATCC	1 cut(s)	646
BsuRI	GGCC	5 cut(s)	189, 373, 560, 678, 734
BtrI	CACGTC	1 cut(s)	667
BtsCI	GGATG	5 cut(s)	223, 520, 643, 814, 820
BtsI	GCAGTG	3 cut(s)	190, 1108, 1285
BtsIMutI	CAGTG	4 cut(s)	190, 1108, 1200, 1285
Cac8I	GCNNGC	4 cut(s)	197, 237, 301, 478
CaiI	CAGNNNCTG	1 cut(s)	449
CfoI	GCGC	5 cut(s)	6, 31, 148, 229, 663
Cfr13I	GGNCC	2 cut(s)	371, 677
CseI	GACGC	2 cut(s)	57, 188
Csp6I	GTAC	3 cut(s)	286, 547, 988
CviAII	CATG	2 cut(s)	347, 1247
CviQI	GTAC	3 cut(s)	286, 547, 988
DdeI	CTNAG	5 cut(s)	210, 531, 1006, 1203, 1217
DpnI	GATC	6 cut(s)	594, 839, 899, 975, 1029, 1245
DpnII	GATC	6 cut(s)	592, 837, 897, 973, 1027, 1243
EaeI	YGGCCR	2 cut(s)	187, 732
Eam1104I	CTCTTC	2 cut(s)	681, 813
EarI	CTCTTC	2 cut(s)	681, 813
EciI	GGCGGA	2 cut(s)	107, 853
Eco130I	CCWWGG	1 cut(s)	630
Eco147I	AGGCCT	1 cut(s)	560
Eco31I	GGTCTC	1 cut(s)	867
Eco32I	GATATC	2 cut(s)	323, 528
Eco47III	AGCGCT	1 cut(s)	147
Eco57I	CTGAAG	1 cut(s)	353
EcoRII	CCWGG	2 cut(s)	179, 560
EcoRV	GATATC	2 cut(s)	323, 528
EcoT14I	CCWWGG	1 cut(s)	630
ErhI	CCWWGG	1 cut(s)	630
Esp3I	CGTCTC	1 cut(s)	206
FaeI	CATG	2 cut(s)	350, 1250
FaqI	GGGAC	3 cut(s)	112, 338, 505
FatI	CATG	2 cut(s)	346, 1246
FbaI	TGATCA	2 cut(s)	837, 1243
FokI	GGATG	5 cut(s)	230, 527, 630, 821, 827
FspBI	CTAG	1 cut(s)	296
GlaI	GCGC	5 cut(s)	5, 30, 147, 228, 662
GsuI	CTGGAG	1 cut(s)	128
HaeII	RGCGCY	3 cut(s)	32, 149, 664
HaeIII	GGCC	5 cut(s)	189, 373, 560, 678, 734
HapII	CCGG	1 cut(s)	230
HgaI	GACGC	2 cut(s)	57, 188
HhaI	GCGC	5 cut(s)	6, 31, 148, 229, 663
Hin1I	GRCGYC	1 cut(s)	35
Hin1II	CATG	2 cut(s)	350, 1250
Hin6I	GCGC	5 cut(s)	4, 29, 146, 227, 661
HinP1I	GCGC	5 cut(s)	4, 29, 146, 227, 661
HincII	GTYRAC	3 cut(s)	166, 795, 1000
HindII	GTYRAC	3 cut(s)	166, 795, 1000
HinfI	GANTC	6 cut(s)	119, 131, 312, 440, 446, 518
HpaII	CCGG	1 cut(s)	230
Hpy166II	GTNNAC	4 cut(s)	166, 288, 795, 1000
Hpy188I	TCNGA	5 cut(s)	445, 532, 589, 932, 1009
Hpy188III	TCNNGA	6 cut(s)	406, 422, 841, 872, 895, 1055
Hpy8I	GTNNAC	4 cut(s)	166, 288, 795, 1000
Hpy99I	CGWCG	4 cut(s)	73, 82, 85, 1180
HpyAV	CCTTC	4 cut(s)	550, 650, 1052, 1064
HpyCH4III	ACNGT	4 cut(s)	16, 103, 997, 1150
HpyCH4IV	ACGT	2 cut(s)	35, 666
HpyCH4V	TGCA	2 cut(s)	195, 575
HpyF10VI	GCNNNNNNNGC	5 cut(s)	47, 143, 192, 863, 1011
HpyF3I	CTNAG	5 cut(s)	210, 531, 1006, 1203, 1217
HpySE526I	ACGT	2 cut(s)	35, 666
Hsp92I	GRCGYC	1 cut(s)	35
Hsp92II	CATG	2 cut(s)	350, 1250
HspAI	GCGC	5 cut(s)	4, 29, 146, 227, 661
Ksp22I	TGATCA	2 cut(s)	837, 1243
Kzo9I	GATC	6 cut(s)	592, 837, 897, 973, 1027, 1243
LmnI	GCTCC	5 cut(s)	109, 232, 424, 470, 932
Lsp1109I	GCAGC	8 cut(s)	53, 56, 59, 77, 211, 428, 485, 844
LweI	GCATC	2 cut(s)	208, 1043
MaeI	CTAG	1 cut(s)	296
MaeII	ACGT	2 cut(s)	35, 666
MaeIII	GTNAC	3 cut(s)	427, 650, 723
MalI	GATC	6 cut(s)	594, 839, 899, 975, 1029, 1245
MboI	GATC	6 cut(s)	592, 837, 897, 973, 1027, 1243
MfeI	CAATTG	1 cut(s)	798
MflI	RGATCY	1 cut(s)	592
MlsI	TGGCCA	1 cut(s)	734
MluCI	AATT	5 cut(s)	410, 692, 786, 798, 1182
MluNI	TGGCCA	1 cut(s)	734
MlyI	GAGTC	3 cut(s)	321, 440, 527
MmeI	TCCRAC	3 cut(s)	147, 195, 448
Mox20I	TGGCCA	1 cut(s)	734
MscI	TGGCCA	1 cut(s)	734
MseI	TTAA	5 cut(s)	11, 273, 758, 992, 1083
Msp20I	TGGCCA	1 cut(s)	734
MspI	CCGG	1 cut(s)	230
MspR9I	CCNGG	2 cut(s)	181, 562
MunI	CAATTG	1 cut(s)	798
MvaI	CCWGG	2 cut(s)	181, 562
MvnI	CGCG	1 cut(s)	6
MwoI	GCNNNNNNNGC	5 cut(s)	47, 143, 192, 863, 1011
NdeII	GATC	6 cut(s)	592, 837, 897, 973, 1027, 1243
NlaIII	CATG	2 cut(s)	350, 1250
NlaIV	GGNNCC	2 cut(s)	624, 679
NmeAIII	GCCGAG	2 cut(s)	399, 1291
NspV	TTCGAA	1 cut(s)	129
PceI	AGGCCT	1 cut(s)	560
PcsI	WCGNNNNNNNCGW	2 cut(s)	77, 420
PfeI	GAWTC	3 cut(s)	119, 131, 440
PflFI	GACNNNGTC	1 cut(s)	155
PleI	GAGTC	3 cut(s)	320, 440, 526
PpsI	GAGTC	3 cut(s)	320, 440, 526
Psp6I	CCWGG	2 cut(s)	179, 560
PspGI	CCWGG	2 cut(s)	179, 560
PspN4I	GGNNCC	2 cut(s)	624, 679
PspPI	GGNCC	2 cut(s)	371, 677
PstNI	CAGNNNCTG	1 cut(s)	449
PsuI	RGATCY	1 cut(s)	592
PsyI	GACNNNGTC	1 cut(s)	155
RsaI	GTAC	3 cut(s)	287, 548, 989
RsaNI	GTAC	3 cut(s)	286, 547, 988
SaqAI	TTAA	5 cut(s)	11, 273, 758, 992, 1083
Sau3AI	GATC	6 cut(s)	592, 837, 897, 973, 1027, 1243
Sau96I	GGNCC	2 cut(s)	371, 677
ScaI	AGTACT	1 cut(s)	989
SchI	GAGTC	3 cut(s)	321, 440, 527
ScrFI	CCNGG	2 cut(s)	181, 562
SfaNI	GCATC	2 cut(s)	208, 1043
SfuI	TTCGAA	1 cut(s)	129
SmlI	CTYRAG	2 cut(s)	404, 1038
SmoI	CTYRAG	2 cut(s)	404, 1038
Sse9I	AATT	5 cut(s)	410, 692, 786, 798, 1182
SseBI	AGGCCT	1 cut(s)	560
SsiI	CCGC	6 cut(s)	6, 62, 92, 186, 221, 864
SspMI	CTAG	1 cut(s)	296
StuI	AGGCCT	1 cut(s)	560
StyD4I	CCNGG	2 cut(s)	179, 560
StyI	CCWWGG	1 cut(s)	630
TaaI	ACNGT	4 cut(s)	16, 103, 997, 1150
TaiI	ACGT	2 cut(s)	38, 669
TaqI	TCGA	4 cut(s)	129, 315, 871, 976
TasI	AATT	5 cut(s)	410, 692, 786, 798, 1182
TatI	WGTACW	3 cut(s)	285, 546, 987
TauI	GCSGC	4 cut(s)	9, 65, 189, 224
TfiI	GAWTC	3 cut(s)	119, 131, 440
Tru1I	TTAA	5 cut(s)	11, 273, 758, 992, 1083
Tru9I	TTAA	5 cut(s)	11, 273, 758, 992, 1083
TscAI	CASTG	4 cut(s)	197, 1108, 1207, 1285
TseI	GCWGC	8 cut(s)	41, 44, 47, 65, 224, 416, 473, 857
TspDTI	ATGAA	6 cut(s)	231, 632, 697, 792, 831, 1119
TspRI	CASTG	4 cut(s)	197, 1108, 1207, 1285
Tth111I	GACNNNGTC	1 cut(s)	155
XapI	RAATTY	2 cut(s)	410, 692
XspI	CTAG	1 cut(s)	296
ZraI	GACGTC	1 cut(s)	36
ZrmI	AGTACT	1 cut(s)	989

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.