Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0006094

Physical Location & Seq

Genomic Coordinates Reverse (-)

51467978 .. 51667660

Gene Structure 199683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG403200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGCGCGGCTTAACGGTGTGGTTCTGGGCGCTGACGTCAGCAGCAGCTATATTGGGGGCGGCAGTGTCGTCATCGTCATCGTCGTCGTGGGTGGCGGACGGGACGGTGCTGGAGCTGGACGATTCCAACTTCGAATCGGCGATTTCAGCGCTGGACTTGGTCTTGGTTGACTTCCACGCCCCCTGGTGCGGCCACTGCAAGCGTCTCTCTCCTCAGTTGGATGCGGCTGCGCCGGTGCTTGCTTCATTGAAGAACCCAATAGTGATAGCAAAAGTTAATGCTGACAAGTATACATCTTTAGCTCGCAAATATGGAGTCGATGGATATCCTACGCTGAAGCTCTTTATACATGGTGTCCCCCAAGAGTATAAAGGGCCGAGGAAAGCCGATTTGCTTGTTAGTTATCTCAAGAAATTCGCAGCTCCCGATGTTACCCTACTTGATTCAGACTCTGCTGTTACTGATTTTGTTGGAGCAGCAGGCACATTCTTCCCTATTTATGTTGGTTTTGGCTTAGATGAGTCCCTGATATCTGAGTTGGGATTGAAGTACAAAAGGAAGGCCTGGTTTTCTGTTGCAAAGGATTTCTCTGAGGATGTAATGATGTTGTATGATTTTGACAAGGTTCCTGCTTTGGTATCCCTTCATCCAAGTTACGATGAGCGCCACGTCTTTTACGGCCCCTTTGAAGAGGAATTTTTGGAAGATTTCATAAAACAAAGTTTGTTACCTTTGGCCATACCCATCAACTATGACACATTAAAATCATTGGACGATGATGAAAGAAAAATTGTGTTGACAATTGTGGAGGATGAGGATGAAGGGAAGTCAAAGAACTTGATCAAGATTTTGAAATCTGCTGCATCCGCTAATCGAGACCTTGTATTTGGTTATGTCGGGATCAAACAATGGGAAGATTTTGCTGAAACATTCGGAGCGAACAAGAAGACAAAACTACCAAAAATGGTTGTTTGGGATCGAATGGAGGAGTACTTAACAGTAAGTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005911 GO:0006457 GO:0006950 GO:0008150 GO:0009505 GO:0009506 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016860 GO:0016864 GO:0030054 GO:0030312 GO:0031090 GO:0033554 GO:0034976 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055044 GO:0071944 GO:0098588 GO:0098805 GO:0140096

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Thioredoxin Thioredoxin_6

Protein Analysis

336

Amino Acids

37.33

Weight (kDa)

4.98

Isoelectric Point (pI)

30.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	36 - 138	8.9e-26	Thioredoxin
Thioredoxin_6	PF13848	196 - 329	3e-09	Thioredoxin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35620
fragaria_vesca	FvH4_5g30970 FvH4_5g30970
malus_domestica	MD08G1220700.v1.1 MD09G1249700.v1.1 MD15G1411400.v1.1
prunus_persica	Prupe.1G557400_v2.0.a1
pyrus_communis	pycom08g19150 pycom15g36620
rosa_chinensis	RchiOBHm_Chr7g0226321 RchiOBHm_Chr7g0226361
rosa_laevigata	RLG00000001746 RLG00000001751
rosa_multiflora	Rmu_sc0001044.1_g000026 Rmu_sc0004322.1_g000024 Rmu_sc0004426.1_g000003 Rmu_sc0004426.1_g000004
rosa_roxburghii	Rroxscaffold_3G00233030 Rroxscaffold_5G00366610
rosa_rugosa	Rorug07G0236600
rosa_samantha	Rh7AG383600 Rh7BG370400 Rh7CG403200 Rh7DG382000
rosa_wichuraiana	Rw7G032130 Rw7G032150 Rw7G032210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	38
AccI	GTMKAC	1 cut(s)	290
AccII	CGCG	1 cut(s)	6
AciI	CCGC	6 cut(s)	6, 59, 95, 189, 224, 867
AclWI	GGATC	2 cut(s)	908, 984
AcoI	YGGCCR	2 cut(s)	190, 735
AcsI	RAATTY	2 cut(s)	413, 695
AcuI	CTGAAG	1 cut(s)	356
AcyI	GRCGYC	1 cut(s)	35
AfaI	GTAC	2 cut(s)	551, 992
AfeI	AGCGCT	1 cut(s)	150
AfiI	CCNNNNNNNGG	1 cut(s)	188
AgsI	TTSAA	4 cut(s)	250, 547, 689, 853
AjiI	CACGTC	1 cut(s)	670
AjnI	CCWGG	2 cut(s)	182, 563
AluBI	AGCT	5 cut(s)	47, 115, 302, 340, 422
AluI	AGCT	5 cut(s)	47, 115, 302, 340, 422
Alw26I	GTCTC	2 cut(s)	209, 870
AlwI	GGATC	2 cut(s)	908, 984
AlwNI	CAGNNNCTG	1 cut(s)	452
Aor51HI	AGCGCT	1 cut(s)	150
AoxI	GGCC	5 cut(s)	190, 374, 561, 679, 735
ApeKI	GCWGC	6 cut(s)	41, 44, 227, 419, 476, 860
ApoI	RAATTY	2 cut(s)	413, 695
ArsI	GACNNNNNNTTYG	4 cut(s)	300, 332, 869, 901
AspLEI	GCGC	5 cut(s)	6, 31, 151, 232, 666
AspS9I	GGNCC	2 cut(s)	374, 680
AsuII	TTCGAA	1 cut(s)	132
BalI	TGGCCA	1 cut(s)	737
BbsI	GAAGAC	1 cut(s)	953
BbvI	GCAGC	6 cut(s)	53, 56, 214, 431, 488, 847
BccI	CCATC	2 cut(s)	314, 752
BceAI	ACGGC	1 cut(s)	694
BciT130I	CCWGG	2 cut(s)	184, 565
BciVI	GTATCC	1 cut(s)	649
BclI	TGATCA	1 cut(s)	840
BcoDI	GTCTC	2 cut(s)	209, 870
BfoI	RGCGCY	3 cut(s)	32, 152, 667
BfuI	GTATCC	1 cut(s)	649
BmcAI	AGTACT	1 cut(s)	992
Bme1390I	CCNGG	2 cut(s)	184, 565
BmgBI	CACGTC	1 cut(s)	670
BmgT120I	GGNCC	2 cut(s)	374, 680
BmiI	GGNNCC	2 cut(s)	627, 682
BmrFI	CCNGG	2 cut(s)	184, 565
BmsI	GCATC	2 cut(s)	211, 872
BpiI	GAAGAC	1 cut(s)	953
BpmI	CTGGAG	1 cut(s)	131
Bpu14I	TTCGAA	1 cut(s)	132
BpuEI	CTTGAG	1 cut(s)	392
BsaBI	GATNNNNATC	1 cut(s)	324
BsaHI	GRCGYC	1 cut(s)	35
BsaI	GGTCTC	1 cut(s)	870
BsaJI	CCNNGG	2 cut(s)	182, 377
Bsc4I	CCNNNNNNNGG	1 cut(s)	188
Bse118I	RCCGGY	1 cut(s)	232
Bse8I	GATNNNNATC	1 cut(s)	324
BseBI	CCWGG	2 cut(s)	184, 565
BseDI	CCNNGG	2 cut(s)	182, 377
BseGI	GGATG	6 cut(s)	226, 601, 646, 817, 823, 863
BseJI	GATNNNNATC	1 cut(s)	324
BseLI	CCNNNNNNNGG	1 cut(s)	188
BseMII	CTCAG	3 cut(s)	227, 525, 582
BseRI	GAGGAG	2 cut(s)	201, 1001
BseXI	GCAGC	6 cut(s)	53, 56, 214, 431, 488, 847
Bsh1236I	CGCG	1 cut(s)	6
BshFI	GGCC	5 cut(s)	192, 376, 563, 681, 737
BsiSI	CCGG	1 cut(s)	233
BslFI	GGGAC	3 cut(s)	115, 341, 508
BslI	CCNNNNNNNGG	1 cut(s)	188
BsmAI	GTCTC	2 cut(s)	209, 870
BsmBI	CGTCTC	1 cut(s)	209
BsmFI	GGGAC	3 cut(s)	115, 341, 508
BsnI	GGCC	5 cut(s)	192, 376, 563, 681, 737
Bso31I	GGTCTC	1 cut(s)	870
Bsp119I	TTCGAA	1 cut(s)	132
Bsp143I	GATC	3 cut(s)	840, 900, 976
BspACI	CCGC	6 cut(s)	6, 59, 95, 189, 224, 867
BspANI	GGCC	5 cut(s)	192, 376, 563, 681, 737
BspCNI	CTCAG	3 cut(s)	226, 526, 583
BspFNI	CGCG	1 cut(s)	6
BspLI	GGNNCC	2 cut(s)	627, 682
BspPI	GGATC	2 cut(s)	908, 984
BspT104I	TTCGAA	1 cut(s)	132
BspTNI	GGTCTC	1 cut(s)	870
BsrFI	RCCGGY	1 cut(s)	232
BssAI	RCCGGY	1 cut(s)	232
BssECI	CCNNGG	2 cut(s)	182, 377
BssMI	GATC	3 cut(s)	840, 900, 976
BssNAI	GTATAC	1 cut(s)	291
BssNI	GRCGYC	1 cut(s)	35
Bst1107I	GTATAC	1 cut(s)	291
Bst2UI	CCWGG	2 cut(s)	184, 565
Bst4CI	ACNGT	3 cut(s)	16, 106, 1000
Bst6I	CTCTTC	1 cut(s)	684
BstACI	GRCGYC	1 cut(s)	35
BstBI	TTCGAA	1 cut(s)	132
BstC8I	GCNNGC	4 cut(s)	200, 240, 304, 481
BstDEI	CTNAG	4 cut(s)	213, 514, 534, 591
BstF5I	GGATG	6 cut(s)	226, 601, 646, 817, 823, 863
BstFNI	CGCG	1 cut(s)	6
BstH2I	RGCGCY	3 cut(s)	32, 152, 667
BstHHI	GCGC	5 cut(s)	6, 31, 151, 232, 666
BstKTI	GATC	3 cut(s)	843, 903, 979
BstMAI	GTCTC	2 cut(s)	209, 870
BstMBI	GATC	3 cut(s)	840, 900, 976
BstMWI	GCNNNNNNNGC	3 cut(s)	146, 195, 866
BstNI	CCWGG	2 cut(s)	184, 565
BstSCI	CCNGG	2 cut(s)	182, 563
BstUI	CGCG	1 cut(s)	6
BstV1I	GCAGC	6 cut(s)	53, 56, 214, 431, 488, 847
BstV2I	GAAGAC	1 cut(s)	953
BstZ17I	GTATAC	1 cut(s)	291
BsuI	GTATCC	1 cut(s)	649
BsuRI	GGCC	5 cut(s)	192, 376, 563, 681, 737
BtrI	CACGTC	1 cut(s)	670
BtsCI	GGATG	6 cut(s)	226, 601, 646, 817, 823, 863
BtsI	GCAGTG	2 cut(s)	69, 193
BtsIMutI	CAGTG	2 cut(s)	69, 193
Cac8I	GCNNGC	4 cut(s)	200, 240, 304, 481
CaiI	CAGNNNCTG	1 cut(s)	452
CfoI	GCGC	5 cut(s)	6, 31, 151, 232, 666
Cfr10I	RCCGGY	1 cut(s)	232
Cfr13I	GGNCC	2 cut(s)	374, 680
CseI	GACGC	1 cut(s)	191
Csp6I	GTAC	2 cut(s)	550, 991
CviAII	CATG	1 cut(s)	350
CviQI	GTAC	2 cut(s)	550, 991
DdeI	CTNAG	4 cut(s)	213, 514, 534, 591
DpnI	GATC	3 cut(s)	842, 902, 978
DpnII	GATC	3 cut(s)	840, 900, 976
EaeI	YGGCCR	2 cut(s)	190, 735
Eam1104I	CTCTTC	1 cut(s)	684
EarI	CTCTTC	1 cut(s)	684
EciI	GGCGGA	1 cut(s)	110
Eco147I	AGGCCT	1 cut(s)	563
Eco31I	GGTCTC	1 cut(s)	870
Eco32I	GATATC	2 cut(s)	326, 531
Eco47III	AGCGCT	1 cut(s)	150
Eco57I	CTGAAG	1 cut(s)	356
EcoRII	CCWGG	2 cut(s)	182, 563
EcoRV	GATATC	2 cut(s)	326, 531
Esp3I	CGTCTC	1 cut(s)	209
FaeI	CATG	1 cut(s)	353
FaqI	GGGAC	3 cut(s)	115, 341, 508
FatI	CATG	1 cut(s)	349
FbaI	TGATCA	1 cut(s)	840
FblI	GTMKAC	1 cut(s)	290
FokI	GGATG	6 cut(s)	233, 608, 633, 824, 830, 850
GlaI	GCGC	5 cut(s)	5, 30, 150, 231, 665
GsuI	CTGGAG	1 cut(s)	131
HaeII	RGCGCY	3 cut(s)	32, 152, 667
HaeIII	GGCC	5 cut(s)	192, 376, 563, 681, 737
HapII	CCGG	1 cut(s)	233
HgaI	GACGC	1 cut(s)	191
HhaI	GCGC	5 cut(s)	6, 31, 151, 232, 666
Hin1I	GRCGYC	1 cut(s)	35
Hin1II	CATG	1 cut(s)	353
Hin6I	GCGC	5 cut(s)	4, 29, 149, 230, 664
HinP1I	GCGC	5 cut(s)	4, 29, 149, 230, 664
HincII	GTYRAC	2 cut(s)	169, 798
HindII	GTYRAC	2 cut(s)	169, 798
HinfI	GANTC	6 cut(s)	122, 134, 315, 443, 449, 521
HpaII	CCGG	1 cut(s)	233
Hpy166II	GTNNAC	3 cut(s)	169, 291, 798
Hpy188I	TCNGA	4 cut(s)	448, 535, 592, 935
Hpy188III	TCNNGA	5 cut(s)	409, 425, 844, 875, 898
Hpy8I	GTNNAC	3 cut(s)	169, 291, 798
Hpy99I	CGWCG	2 cut(s)	85, 88
HpyAV	CCTTC	3 cut(s)	553, 653, 815
HpyCH4III	ACNGT	3 cut(s)	16, 106, 1000
HpyCH4IV	ACGT	2 cut(s)	35, 669
HpyCH4V	TGCA	3 cut(s)	198, 578, 863
HpyF10VI	GCNNNNNNNGC	3 cut(s)	146, 195, 866
HpyF3I	CTNAG	4 cut(s)	213, 514, 534, 591
HpySE526I	ACGT	2 cut(s)	35, 669
Hsp92I	GRCGYC	1 cut(s)	35
Hsp92II	CATG	1 cut(s)	353
HspAI	GCGC	5 cut(s)	4, 29, 149, 230, 664
Ksp22I	TGATCA	1 cut(s)	840
Kzo9I	GATC	3 cut(s)	840, 900, 976
LmnI	GCTCC	4 cut(s)	112, 427, 473, 935
Lsp1109I	GCAGC	6 cut(s)	53, 56, 214, 431, 488, 847
LweI	GCATC	2 cut(s)	211, 872
MaeII	ACGT	2 cut(s)	35, 669
MaeIII	GTNAC	4 cut(s)	430, 457, 653, 726
MalI	GATC	3 cut(s)	842, 902, 978
MboI	GATC	3 cut(s)	840, 900, 976
MboII	GAAGA	6 cut(s)	262, 481, 701, 716, 926, 958
MfeI	CAATTG	1 cut(s)	801
MlsI	TGGCCA	1 cut(s)	737
MluCI	AATT	4 cut(s)	413, 695, 789, 801
MluNI	TGGCCA	1 cut(s)	737
MlyI	GAGTC	3 cut(s)	324, 443, 530
MmeI	TCCRAC	3 cut(s)	150, 198, 451
MnlI	CCTC	7 cut(s)	222, 372, 586, 685, 802, 808, 979
Mox20I	TGGCCA	1 cut(s)	737
MscI	TGGCCA	1 cut(s)	737
MseI	TTAA	5 cut(s)	11, 276, 761, 995, 1009
Msp20I	TGGCCA	1 cut(s)	737
MspI	CCGG	1 cut(s)	233
MspR9I	CCNGG	2 cut(s)	184, 565
MunI	CAATTG	1 cut(s)	801
MvaI	CCWGG	2 cut(s)	184, 565
MvnI	CGCG	1 cut(s)	6
MwoI	GCNNNNNNNGC	3 cut(s)	146, 195, 866
NdeII	GATC	3 cut(s)	840, 900, 976
NlaIII	CATG	1 cut(s)	353
NlaIV	GGNNCC	2 cut(s)	627, 682
NmeAIII	GCCGAG	1 cut(s)	402
NspV	TTCGAA	1 cut(s)	132
PceI	AGGCCT	1 cut(s)	563
PcsI	WCGNNNNNNNCGW	2 cut(s)	80, 423
PfeI	GAWTC	3 cut(s)	122, 134, 443
PflFI	GACNNNGTC	1 cut(s)	158
PleI	GAGTC	3 cut(s)	323, 443, 529
PpsI	GAGTC	3 cut(s)	323, 443, 529
Psp6I	CCWGG	2 cut(s)	182, 563
PspGI	CCWGG	2 cut(s)	182, 563
PspN4I	GGNNCC	2 cut(s)	627, 682
PspPI	GGNCC	2 cut(s)	374, 680
PstNI	CAGNNNCTG	1 cut(s)	452
PsyI	GACNNNGTC	1 cut(s)	158
RsaI	GTAC	2 cut(s)	551, 992
RsaNI	GTAC	2 cut(s)	550, 991
SaqAI	TTAA	5 cut(s)	11, 276, 761, 995, 1009
Sau3AI	GATC	3 cut(s)	840, 900, 976
Sau96I	GGNCC	2 cut(s)	374, 680
ScaI	AGTACT	1 cut(s)	992
SchI	GAGTC	3 cut(s)	324, 443, 530
ScrFI	CCNGG	2 cut(s)	184, 565
SfaNI	GCATC	2 cut(s)	211, 872
SfuI	TTCGAA	1 cut(s)	132
SgrAI	CRCCGGYG	1 cut(s)	232
SmlI	CTYRAG	1 cut(s)	407
SmoI	CTYRAG	1 cut(s)	407
Sse9I	AATT	4 cut(s)	413, 695, 789, 801
SseBI	AGGCCT	1 cut(s)	563
SsiI	CCGC	6 cut(s)	6, 59, 95, 189, 224, 867
StuI	AGGCCT	1 cut(s)	563
StyD4I	CCNGG	2 cut(s)	182, 563
TaaI	ACNGT	3 cut(s)	16, 106, 1000
TaiI	ACGT	2 cut(s)	38, 672
TaqI	TCGA	4 cut(s)	132, 318, 874, 979
TasI	AATT	4 cut(s)	413, 695, 789, 801
TatI	WGTACW	2 cut(s)	549, 990
TauI	GCSGC	4 cut(s)	9, 62, 192, 227
TfiI	GAWTC	3 cut(s)	122, 134, 443
Tru1I	TTAA	5 cut(s)	11, 276, 761, 995, 1009
Tru9I	TTAA	5 cut(s)	11, 276, 761, 995, 1009
TscAI	CASTG	2 cut(s)	69, 200
TseI	GCWGC	6 cut(s)	41, 44, 227, 419, 476, 860
TspDTI	ATGAA	5 cut(s)	234, 635, 700, 795, 834
TspRI	CASTG	2 cut(s)	69, 200
Tth111I	GACNNNGTC	1 cut(s)	158
XapI	RAATTY	2 cut(s)	413, 695
XmiI	GTMKAC	1 cut(s)	290
ZraI	GACGTC	1 cut(s)	36
ZrmI	AGTACT	1 cut(s)	992

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.