Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004322.1

Orthogroup ID

OG0006094

Physical Location & Seq

Genomic Coordinates Reverse (-)

67792 .. 72192

Gene Structure 4401 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004322.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

atgcgcgtcttaacggtgtggttctgggcgctgacgtcagcagcagcagctatattgggggcggcagtgtcgtcatcgtcgtgggtggcggacgggacggtgctggagctggacgattccaacttcgaatcggcgatttcagcgctggacttggtcttggtggacttccacgccccctggtgcggccactgcaagcgtctctctcctcagttggatgcggctgcgccggtgcttgcttcattgaagaacccaatagtgatagcaaaagttaatgctgacaagtatacgtctctagctcgcaaatatggagtcgatggatatcctacgctgaagctctttatacatggtgtcccccaagagtataaagggccgaggaaagccgatttgcttgttagttatctcaagaaatttgcagctcccgatgttaccctacttgattcagactctgctgttgctgattttgttggagcggcaggcacattcttccctatttatgttggttttggcttagatgagtccctgatatctgcgttgggattgaagtacaaaaggaaggcctggttttctgttgcaaaggatttctcggaggatctaatgatgttgtatgattttgacaaggttcctgccttggtatcccttcatccaagttacgatgagcgccacgtcttttacggcccctttgaagaggaatttttggaagatttcataagacaaagtttgttacctttggccatacccatcaactatgacacattaaaatcattggacgatgatgaaagaaaaattgtgttgacaattgtggaggatgaggatgaagagaagtcaaagaacttgatcaagattttgaaatctgctgcatccgctaatcgagaccttgtatttggttatgtcgggatcaaacaatgggaagattttgctgaaacattcggagcgaacaagaagacaaaactaccaaaaatggttgtttgggatcgaatggaggagtacttaacagtcaacggctcagaaagcattgacggggaagatcaggcatctcaagtctcgcagtttcttgaaggatataaggaaggaagaacgattaaagaaaaagttggtggcagtgtgtcgcttactgcctttatatcttcatttattgggattggaactgtgtatatattagtttttgtggtagcgacgataattcttattagaaaagccactgaggaagaacctctcagggttggtaggggagataaggttgatcatgctacaagctctactgccgaggctgaaagcagtgagcataaagctggagaaaaggaagattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005911 GO:0006457 GO:0006950 GO:0008150 GO:0009505 GO:0009506 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016860 GO:0016864 GO:0030054 GO:0030312 GO:0031090 GO:0033554 GO:0034976 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055044 GO:0071944 GO:0098588 GO:0098805 GO:0140096

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Thioredoxin Thioredoxin_6

Protein Analysis

435

Amino Acids

48.02

Weight (kDa)

4.91

Isoelectric Point (pI)

30.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35620
fragaria_vesca	FvH4_5g30970 FvH4_5g30970
malus_domestica	MD08G1220700.v1.1 MD09G1249700.v1.1 MD15G1411400.v1.1
prunus_persica	Prupe.1G557400_v2.0.a1
pyrus_communis	pycom08g19150 pycom15g36620
rosa_chinensis	RchiOBHm_Chr7g0226321 RchiOBHm_Chr7g0226361
rosa_laevigata	RLG00000001746 RLG00000001751
rosa_multiflora	Rmu_sc0001044.1_g000026 Rmu_sc0004322.1_g000024 Rmu_sc0004426.1_g000003 Rmu_sc0004426.1_g000004
rosa_roxburghii	Rroxscaffold_3G00233030 Rroxscaffold_5G00366610
rosa_rugosa	Rorug07G0236600
rosa_samantha	Rh7AG383600 Rh7BG370400 Rh7CG403200 Rh7DG382000
rosa_wichuraiana	Rw7G032130 Rw7G032150 Rw7G032210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	38
AccBSI	CCGCTC	1 cut(s)	470
AccI	GTMKAC	1 cut(s)	284
AccII	CGCG	1 cut(s)	6
AciI	CCGC	6 cut(s)	62, 89, 183, 218, 470, 861
AclWI	GGATC	3 cut(s)	597, 902, 978
AcoI	YGGCCR	2 cut(s)	184, 729
AcsI	RAATTY	2 cut(s)	407, 689
AcuI	CTGAAG	1 cut(s)	350
AcyI	GRCGYC	1 cut(s)	35
AfaI	GTAC	2 cut(s)	545, 986
AfeI	AGCGCT	1 cut(s)	144
AfiI	CCNNNNNNNGG	1 cut(s)	182
AgsI	TTSAA	5 cut(s)	244, 541, 683, 847, 1055
AjiI	CACGTC	1 cut(s)	664
AjnI	CCWGG	2 cut(s)	176, 557
AluBI	AGCT	7 cut(s)	50, 109, 296, 334, 416, 1254, 1289
AluI	AGCT	7 cut(s)	50, 109, 296, 334, 416, 1254, 1289
Alw26I	GTCTC	4 cut(s)	203, 294, 864, 1045
AlwI	GGATC	3 cut(s)	597, 902, 978
AlwNI	CAGNNNCTG	1 cut(s)	446
Aor51HI	AGCGCT	1 cut(s)	144
AoxI	GGCC	5 cut(s)	184, 368, 555, 673, 729
ApeKI	GCWGC	6 cut(s)	41, 44, 47, 221, 413, 854
ApoI	RAATTY	2 cut(s)	407, 689
ArsI	GACNNNNNNTTYG	4 cut(s)	294, 326, 863, 895
AspLEI	GCGC	5 cut(s)	6, 31, 145, 226, 660
AspS9I	GGNCC	2 cut(s)	368, 674
AsuII	TTCGAA	1 cut(s)	126
BalI	TGGCCA	1 cut(s)	731
BbsI	GAAGAC	1 cut(s)	947
BbvI	GCAGC	6 cut(s)	53, 56, 59, 208, 425, 841
BccI	CCATC	2 cut(s)	308, 746
BceAI	ACGGC	2 cut(s)	688, 1015
BciT130I	CCWGG	2 cut(s)	178, 559
BciVI	GTATCC	1 cut(s)	643
BclI	TGATCA	2 cut(s)	834, 1240
BcoDI	GTCTC	4 cut(s)	203, 294, 864, 1045
BfaI	CTAG	1 cut(s)	293
BfoI	RGCGCY	3 cut(s)	32, 146, 661
BfuI	GTATCC	1 cut(s)	643
BmcAI	AGTACT	1 cut(s)	986
Bme1390I	CCNGG	2 cut(s)	178, 559
BmgBI	CACGTC	1 cut(s)	664
BmgT120I	GGNCC	2 cut(s)	368, 674
BmiI	GGNNCC	2 cut(s)	621, 676
BmrFI	CCNGG	2 cut(s)	178, 559
BmsI	GCATC	3 cut(s)	205, 866, 1040
BpiI	GAAGAC	1 cut(s)	947
BpmI	CTGGAG	1 cut(s)	125
Bpu14I	TTCGAA	1 cut(s)	126
BpuEI	CTTGAG	2 cut(s)	386, 1020
BsaBI	GATNNNNATC	1 cut(s)	318
BsaHI	GRCGYC	1 cut(s)	35
BsaI	GGTCTC	1 cut(s)	864
BsaJI	CCNNGG	4 cut(s)	176, 371, 627, 1263
BsaXI	ACNNNNNCTCC	2 cut(s)	1221, 1251
Bsc4I	CCNNNNNNNGG	1 cut(s)	182
Bse118I	RCCGGY	1 cut(s)	226
Bse8I	GATNNNNATC	1 cut(s)	318
BseBI	CCWGG	2 cut(s)	178, 559
BseDI	CCNNGG	4 cut(s)	176, 371, 627, 1263
BseGI	GGATG	5 cut(s)	220, 640, 811, 817, 857
BseJI	GATNNNNATC	1 cut(s)	318
BseLI	CCNNNNNNNGG	1 cut(s)	182
BseMII	CTCAG	4 cut(s)	221, 1017, 1191, 1228
BseRI	GAGGAG	2 cut(s)	195, 995
BseXI	GCAGC	6 cut(s)	53, 56, 59, 208, 425, 841
Bsh1236I	CGCG	1 cut(s)	6
BshFI	GGCC	5 cut(s)	186, 370, 557, 675, 731
BsiSI	CCGG	1 cut(s)	227
BslFI	GGGAC	3 cut(s)	109, 335, 502
BslI	CCNNNNNNNGG	1 cut(s)	182
BsmAI	GTCTC	4 cut(s)	203, 294, 864, 1045
BsmBI	CGTCTC	2 cut(s)	203, 294
BsmFI	GGGAC	3 cut(s)	109, 335, 502
BsnI	GGCC	5 cut(s)	186, 370, 557, 675, 731
Bso31I	GGTCTC	1 cut(s)	864
Bsp119I	TTCGAA	1 cut(s)	126
Bsp143I	GATC	6 cut(s)	589, 834, 894, 970, 1024, 1240
BspACI	CCGC	6 cut(s)	62, 89, 183, 218, 470, 861
BspANI	GGCC	5 cut(s)	186, 370, 557, 675, 731
BspCNI	CTCAG	4 cut(s)	220, 1016, 1192, 1227
BspFNI	CGCG	1 cut(s)	6
BspLI	GGNNCC	2 cut(s)	621, 676
BspPI	GGATC	3 cut(s)	597, 902, 978
BspT104I	TTCGAA	1 cut(s)	126
BspTNI	GGTCTC	1 cut(s)	864
BsrBI	CCGCTC	1 cut(s)	470
BsrFI	RCCGGY	1 cut(s)	226
BssAI	RCCGGY	1 cut(s)	226
BssECI	CCNNGG	4 cut(s)	176, 371, 627, 1263
BssMI	GATC	6 cut(s)	589, 834, 894, 970, 1024, 1240
BssNAI	GTATAC	1 cut(s)	285
BssNI	GRCGYC	1 cut(s)	35
BssT1I	CCWWGG	1 cut(s)	627
Bst1107I	GTATAC	1 cut(s)	285
Bst2UI	CCWGG	2 cut(s)	178, 559
Bst4CI	ACNGT	4 cut(s)	16, 100, 994, 1147
Bst6I	CTCTTC	2 cut(s)	678, 810
BstACI	GRCGYC	1 cut(s)	35
BstBI	TTCGAA	1 cut(s)	126
BstC8I	GCNNGC	4 cut(s)	194, 234, 298, 475
BstDEI	CTNAG	5 cut(s)	207, 508, 1003, 1200, 1214
BstF5I	GGATG	5 cut(s)	220, 640, 811, 817, 857
BstFNI	CGCG	1 cut(s)	6
BstH2I	RGCGCY	3 cut(s)	32, 146, 661
BstHHI	GCGC	5 cut(s)	6, 31, 145, 226, 660
BstKTI	GATC	6 cut(s)	592, 837, 897, 973, 1027, 1243
BstMAI	GTCTC	4 cut(s)	203, 294, 864, 1045
BstMBI	GATC	6 cut(s)	589, 834, 894, 970, 1024, 1240
BstMWI	GCNNNNNNNGC	5 cut(s)	47, 140, 189, 860, 1008
BstNI	CCWGG	2 cut(s)	178, 559
BstSCI	CCNGG	2 cut(s)	176, 557
BstUI	CGCG	1 cut(s)	6
BstV1I	GCAGC	6 cut(s)	53, 56, 59, 208, 425, 841
BstV2I	GAAGAC	1 cut(s)	947
BstX2I	RGATCY	1 cut(s)	589
BstYI	RGATCY	1 cut(s)	589
BstZ17I	GTATAC	1 cut(s)	285
BsuI	GTATCC	1 cut(s)	643
BsuRI	GGCC	5 cut(s)	186, 370, 557, 675, 731
BtrI	CACGTC	1 cut(s)	664
BtsCI	GGATG	5 cut(s)	220, 640, 811, 817, 857
BtsI	GCAGTG	4 cut(s)	72, 187, 1105, 1282
BtsIMutI	CAGTG	5 cut(s)	72, 187, 1105, 1197, 1282
Cac8I	GCNNGC	4 cut(s)	194, 234, 298, 475
CaiI	CAGNNNCTG	1 cut(s)	446
CfoI	GCGC	5 cut(s)	6, 31, 145, 226, 660
Cfr10I	RCCGGY	1 cut(s)	226
Cfr13I	GGNCC	2 cut(s)	368, 674
CseI	GACGC	1 cut(s)	185
Csp6I	GTAC	2 cut(s)	544, 985
CviAII	CATG	2 cut(s)	344, 1244
CviQI	GTAC	2 cut(s)	544, 985
DdeI	CTNAG	5 cut(s)	207, 508, 1003, 1200, 1214
DpnI	GATC	6 cut(s)	591, 836, 896, 972, 1026, 1242
DpnII	GATC	6 cut(s)	589, 834, 894, 970, 1024, 1240
EaeI	YGGCCR	2 cut(s)	184, 729
Eam1104I	CTCTTC	2 cut(s)	678, 810
EarI	CTCTTC	2 cut(s)	678, 810
EciI	GGCGGA	1 cut(s)	104
Eco130I	CCWWGG	1 cut(s)	627
Eco147I	AGGCCT	1 cut(s)	557
Eco31I	GGTCTC	1 cut(s)	864
Eco32I	GATATC	2 cut(s)	320, 525
Eco47III	AGCGCT	1 cut(s)	144
Eco57I	CTGAAG	1 cut(s)	350
EcoRII	CCWGG	2 cut(s)	176, 557
EcoRV	GATATC	2 cut(s)	320, 525
EcoT14I	CCWWGG	1 cut(s)	627
ErhI	CCWWGG	1 cut(s)	627
Esp3I	CGTCTC	2 cut(s)	203, 294
FaeI	CATG	2 cut(s)	347, 1247
FaqI	GGGAC	3 cut(s)	109, 335, 502
FatI	CATG	2 cut(s)	343, 1243
FbaI	TGATCA	2 cut(s)	834, 1240
FblI	GTMKAC	1 cut(s)	284
FokI	GGATG	5 cut(s)	227, 627, 818, 824, 844
FspBI	CTAG	1 cut(s)	293
GlaI	GCGC	5 cut(s)	5, 30, 144, 225, 659
GsuI	CTGGAG	1 cut(s)	125
HaeII	RGCGCY	3 cut(s)	32, 146, 661
HaeIII	GGCC	5 cut(s)	186, 370, 557, 675, 731
HapII	CCGG	1 cut(s)	227
HgaI	GACGC	1 cut(s)	185
HhaI	GCGC	5 cut(s)	6, 31, 145, 226, 660
Hin1I	GRCGYC	1 cut(s)	35
Hin1II	CATG	2 cut(s)	347, 1247
Hin6I	GCGC	5 cut(s)	4, 29, 143, 224, 658
HinP1I	GCGC	5 cut(s)	4, 29, 143, 224, 658
HincII	GTYRAC	2 cut(s)	792, 997
HindII	GTYRAC	2 cut(s)	792, 997
HinfI	GANTC	6 cut(s)	116, 128, 309, 437, 443, 515
HpaII	CCGG	1 cut(s)	227
Hpy166II	GTNNAC	4 cut(s)	163, 285, 792, 997
Hpy188I	TCNGA	4 cut(s)	442, 586, 929, 1006
Hpy188III	TCNNGA	6 cut(s)	403, 419, 838, 869, 892, 1052
Hpy8I	GTNNAC	4 cut(s)	163, 285, 792, 997
Hpy99I	CGWCG	2 cut(s)	82, 1177
HpyAV	CCTTC	4 cut(s)	547, 647, 1049, 1061
HpyCH4III	ACNGT	4 cut(s)	16, 100, 994, 1147
HpyCH4IV	ACGT	3 cut(s)	35, 287, 663
HpyCH4V	TGCA	4 cut(s)	192, 413, 572, 857
HpyF10VI	GCNNNNNNNGC	5 cut(s)	47, 140, 189, 860, 1008
HpyF3I	CTNAG	5 cut(s)	207, 508, 1003, 1200, 1214
HpySE526I	ACGT	3 cut(s)	35, 287, 663
Hsp92I	GRCGYC	1 cut(s)	35
Hsp92II	CATG	2 cut(s)	347, 1247
HspAI	GCGC	5 cut(s)	4, 29, 143, 224, 658
Ksp22I	TGATCA	2 cut(s)	834, 1240
Kzo9I	GATC	6 cut(s)	589, 834, 894, 970, 1024, 1240
LmnI	GCTCC	4 cut(s)	106, 421, 467, 929
Lsp1109I	GCAGC	6 cut(s)	53, 56, 59, 208, 425, 841
LweI	GCATC	3 cut(s)	205, 866, 1040
MaeI	CTAG	1 cut(s)	293
MaeII	ACGT	3 cut(s)	35, 287, 663
MaeIII	GTNAC	3 cut(s)	424, 647, 720
MalI	GATC	6 cut(s)	591, 836, 896, 972, 1026, 1242
MbiI	CCGCTC	1 cut(s)	470
MboI	GATC	6 cut(s)	589, 834, 894, 970, 1024, 1240
MfeI	CAATTG	1 cut(s)	795
MflI	RGATCY	1 cut(s)	589
MlsI	TGGCCA	1 cut(s)	731
MluCI	AATT	5 cut(s)	407, 689, 783, 795, 1179
MluNI	TGGCCA	1 cut(s)	731
MlyI	GAGTC	3 cut(s)	318, 437, 524
MmeI	TCCRAC	3 cut(s)	144, 192, 445
Mox20I	TGGCCA	1 cut(s)	731
MscI	TGGCCA	1 cut(s)	731
MseI	TTAA	5 cut(s)	11, 270, 755, 989, 1080
MslI	CAYNNNNRTG	1 cut(s)	79
Msp20I	TGGCCA	1 cut(s)	731
MspI	CCGG	1 cut(s)	227
MspR9I	CCNGG	2 cut(s)	178, 559
MunI	CAATTG	1 cut(s)	795
MvaI	CCWGG	2 cut(s)	178, 559
MvnI	CGCG	1 cut(s)	6
MwoI	GCNNNNNNNGC	5 cut(s)	47, 140, 189, 860, 1008
NdeII	GATC	6 cut(s)	589, 834, 894, 970, 1024, 1240
NlaIII	CATG	2 cut(s)	347, 1247
NlaIV	GGNNCC	2 cut(s)	621, 676
NmeAIII	GCCGAG	2 cut(s)	396, 1288
NspV	TTCGAA	1 cut(s)	126
PceI	AGGCCT	1 cut(s)	557
PcsI	WCGNNNNNNNCGW	1 cut(s)	77
PfeI	GAWTC	3 cut(s)	116, 128, 437
PflFI	GACNNNGTC	1 cut(s)	152
PleI	GAGTC	3 cut(s)	317, 437, 523
PpsI	GAGTC	3 cut(s)	317, 437, 523
Psp6I	CCWGG	2 cut(s)	176, 557
PspGI	CCWGG	2 cut(s)	176, 557
PspN4I	GGNNCC	2 cut(s)	621, 676
PspPI	GGNCC	2 cut(s)	368, 674
PstNI	CAGNNNCTG	1 cut(s)	446
PsuI	RGATCY	1 cut(s)	589
PsyI	GACNNNGTC	1 cut(s)	152
RsaI	GTAC	2 cut(s)	545, 986
RsaNI	GTAC	2 cut(s)	544, 985
RseI	CAYNNNNRTG	1 cut(s)	79
SaqAI	TTAA	5 cut(s)	11, 270, 755, 989, 1080
Sau3AI	GATC	6 cut(s)	589, 834, 894, 970, 1024, 1240
Sau96I	GGNCC	2 cut(s)	368, 674
ScaI	AGTACT	1 cut(s)	986
SchI	GAGTC	3 cut(s)	318, 437, 524
ScrFI	CCNGG	2 cut(s)	178, 559
SfaNI	GCATC	3 cut(s)	205, 866, 1040
SfuI	TTCGAA	1 cut(s)	126
SgrAI	CRCCGGYG	1 cut(s)	226
SmiMI	CAYNNNNRTG	1 cut(s)	79
SmlI	CTYRAG	2 cut(s)	401, 1035
SmoI	CTYRAG	2 cut(s)	401, 1035
Sse9I	AATT	5 cut(s)	407, 689, 783, 795, 1179
SseBI	AGGCCT	1 cut(s)	557
SsiI	CCGC	6 cut(s)	62, 89, 183, 218, 470, 861
SspMI	CTAG	1 cut(s)	293
StuI	AGGCCT	1 cut(s)	557
StyD4I	CCNGG	2 cut(s)	176, 557
StyI	CCWWGG	1 cut(s)	627
TaaI	ACNGT	4 cut(s)	16, 100, 994, 1147
TaiI	ACGT	3 cut(s)	38, 290, 666
TaqI	TCGA	4 cut(s)	126, 312, 868, 973
TasI	AATT	5 cut(s)	407, 689, 783, 795, 1179
TatI	WGTACW	2 cut(s)	543, 984
TauI	GCSGC	4 cut(s)	65, 186, 221, 473
TfiI	GAWTC	3 cut(s)	116, 128, 437
Tru1I	TTAA	5 cut(s)	11, 270, 755, 989, 1080
Tru9I	TTAA	5 cut(s)	11, 270, 755, 989, 1080
TscAI	CASTG	5 cut(s)	72, 194, 1105, 1204, 1282
TseI	GCWGC	6 cut(s)	41, 44, 47, 221, 413, 854
TspDTI	ATGAA	6 cut(s)	228, 629, 694, 789, 828, 1116
TspRI	CASTG	5 cut(s)	72, 194, 1105, 1204, 1282
Tth111I	GACNNNGTC	1 cut(s)	152
XapI	RAATTY	2 cut(s)	407, 689
XmiI	GTMKAC	1 cut(s)	284
XspI	CTAG	1 cut(s)	293
ZraI	GACGTC	1 cut(s)	36
ZrmI	AGTACT	1 cut(s)	986

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.