FvH4_5g30970

disulfide-isomerase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
21928363 .. 21933243
4881 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g30970.t2

Sequence Viewer

Length: 1155 bp
ATGCGCACGGGCGGCTTCACGGTGTGGTTCTGGGCGCTGACGTCAGCAGTTGCTGTATTTGGGGCGGTAGTTTCGTCGTCGACGACTTGGGTGGCTGACGGGAGGGTGCTGGAGCTGGACGACTCCAATTTCGAATCGGCGATTTCAGCGCTGGACTTGGTCTTGGTCGACTTCCACGCCCCATGGTGCGGCCACTGCAAGCGTCTCGCTCCTCAGTTGGATGCGGCGGCGCCGATGCTTGCCTCATTGAAGAACCCAATAGTGATAGCTAAGGTGAATGCTGACAAGTATAGGTCTCTAGGTGACAAATACGGAGTCGATGGATTTCCGACACTGAAGCTGTTCATACATGGTGTGCCCCAAGAGTACAAAGGCCCCAGGAAAGCCGATTTGCTTGTTCGTTATTTGAAGAAATTTGCTGCTCCGGATGTTACTGTGCTTGATTCGGACTCGGCTATTGCTGATTTTGTTGAGGCAGCAGGCACATTCTTCCCTGTATATATTGGCTTTGGGTTGGATGAGTCCATGATATCTAAGTTAGCATTGAAGTACAAAAAGAAGGCCTGGTTTTCAGTTGCAAAGGATTTCTCTGAGGATGCAATGCTGTTGTATGATTTTGACAAGGCTCCTGCTTTGCTATCCCTCCATCCAAGTTACAATGAGCGGCACGTTTTTTATGGACCCTTTGAAGAGGAATTTTTGGAGGATTTCATAAAACAAAGTTTGTTACCTTTGGCCATTCCCATCAACTATGACACGTTAAAATCATTGGAGGATGATGAAAGGAAAATTGTGTTGACAATTGTTGAGGATGAGGATGAAGAGAAGTCAAAGAACTTGATTAAGATTTTGAAATCTGCGGCATCTGCTAATCGAGACCTTGTATTTGGTTATGTCGGGATCAAACAATGGGAAGATTTTGCAGATACATTTGGAGCGAACAAGAAGACAAAATTACCAAAAATGGTTGTTTGGGATCGAACGGAGGAGTTAATGGCTCAGAAAGCATTGGTGAGGAAGATCAGGCATCTCAAGTCTCGCAGTTTCTTGAAGGATACAAGGAAGGAAGAACAATTAAAGAAAGAGTTGGTGGCAGTGTGTCGGTTACTTCCTTTATATCTTCATTTCTTGGGCTTGGAACTGTGTATGTACTAG

Protein Analysis

385

Amino Acids

43.4

Weight (kDa)

6.22

Isoelectric Point (pI)

29.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thioredoxin PF00085 89 - 191 2.4e-25 Thioredoxin
Thioredoxin_6 PF13848 249 - 395 1.9e-10 Thioredoxin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 44
Acc16I TGCGCA 1 cut(s) 5
AccB1I GGYRCC 1 cut(s) 229
AccBSI CCGCTC 1 cut(s) 664
AccI GTMKAC 2 cut(s) 80, 168
AccIII TCCGGA 1 cut(s) 424
AciI CCGC 7 cut(s) 12, 65, 189, 224, 227, 664, 860
AclWI GGATC 2 cut(s) 908, 984
AcoI YGGCCR 2 cut(s) 190, 735
AcsI RAATTY 2 cut(s) 413, 695
AcuI CTGAAG 1 cut(s) 356
AcyI GRCGYC 2 cut(s) 41, 230
AdeI CACNNNGTG 1 cut(s) 24
AfaI GTAC 3 cut(s) 368, 551, 1151
AfeI AGCGCT 1 cut(s) 150
AfiI CCNNNNNNNGG 1 cut(s) 188
AflIII ACRYGT 1 cut(s) 756
AgsI TTSAA 6 cut(s) 250, 409, 547, 689, 853, 1051
AjnI CCWGG 2 cut(s) 377, 563
AluBI AGCT 3 cut(s) 115, 269, 340
AluI AGCT 3 cut(s) 115, 269, 340
Alw26I GTCTC 4 cut(s) 209, 300, 870, 1041
AlwI GGATC 2 cut(s) 908, 984
AlwNI CAGNNNCTG 1 cut(s) 53
Aor13HI TCCGGA 1 cut(s) 424
Aor51HI AGCGCT 1 cut(s) 150
AoxI GGCC 4 cut(s) 190, 373, 561, 735
ApeKI GCWGC 2 cut(s) 419, 476
ApoI RAATTY 2 cut(s) 413, 695
ArsI GACNNNNNNTTYG 6 cut(s) 113, 145, 300, 332, 869, 901
Asp700I GAANNNNTTC 1 cut(s) 341
AspLEI GCGC 4 cut(s) 6, 37, 151, 232
AspS9I GGNCC 2 cut(s) 374, 680
AsuHPI GGTGA 3 cut(s) 286, 314, 1024
AsuII TTCGAA 1 cut(s) 132
AvaII GGWCC 1 cut(s) 680
BaeGI GKGCMC 1 cut(s) 360
BalI TGGCCA 1 cut(s) 737
BanI GGYRCC 1 cut(s) 229
BbsI GAAGAC 1 cut(s) 953
BbvI GCAGC 2 cut(s) 406, 488
BccI CCATC 3 cut(s) 314, 654, 752
BcgI CGANNNNNNTGC 2 cut(s) 187, 221
BciT130I CCWGG 2 cut(s) 379, 565
BciVI GTATCC 1 cut(s) 1048
BcoDI GTCTC 4 cut(s) 209, 300, 870, 1041
BfaI CTAG 2 cut(s) 299, 1153
BfoI RGCGCY 3 cut(s) 38, 152, 233
BfuI GTATCC 1 cut(s) 1048
BisI GCNGC 8 cut(s) 13, 190, 225, 228, 420, 477, 665, 861
BlsI GCNGC 8 cut(s) 14, 191, 226, 229, 421, 478, 666, 862
Bme1390I CCNGG 2 cut(s) 379, 565
Bme18I GGWCC 1 cut(s) 680
BmgT120I GGNCC 2 cut(s) 374, 680
BmiI GGNNCC 4 cut(s) 231, 376, 627, 682
BmrFI CCNGG 2 cut(s) 379, 565
BmsI GCATC 5 cut(s) 211, 225, 586, 872, 1036
BpiI GAAGAC 1 cut(s) 953
BpmI CTGGAG 1 cut(s) 131
Bpu10I CCTNAGC 1 cut(s) 270
Bpu14I TTCGAA 1 cut(s) 132
BpuEI CTTGAG 1 cut(s) 1016
BsaHI GRCGYC 2 cut(s) 41, 230
BsaI GGTCTC 2 cut(s) 300, 870
BsaJI CCNNGG 2 cut(s) 182, 377
BsaWI WCCGGW 1 cut(s) 424
Bsc4I CCNNNNNNNGG 1 cut(s) 188
Bse3DI GCAATG 1 cut(s) 606
BseAI TCCGGA 1 cut(s) 424
BseBI CCWGG 2 cut(s) 379, 565
BseDI CCNNGG 2 cut(s) 182, 377
BseGI GGATG 8 cut(s) 226, 433, 523, 601, 646, 781, 817, 823
BseLI CCNNNNNNNGG 1 cut(s) 188
BseMI GCAATG 1 cut(s) 606
BseMII CTCAG 3 cut(s) 227, 582, 1013
BseRI GAGGAG 2 cut(s) 201, 1001
BseSI GKGCMC 1 cut(s) 360
BseXI GCAGC 2 cut(s) 406, 488
BshFI GGCC 4 cut(s) 192, 375, 563, 737
BshNI GGYRCC 1 cut(s) 229
BsiSI CCGG 1 cut(s) 425
BslI CCNNNNNNNGG 1 cut(s) 188
BsmAI GTCTC 4 cut(s) 209, 300, 870, 1041
BsmBI CGTCTC 1 cut(s) 209
BsmI GAATGC 1 cut(s) 283
BsnI GGCC 4 cut(s) 192, 375, 563, 737
Bso31I GGTCTC 2 cut(s) 300, 870
Bsp119I TTCGAA 1 cut(s) 132
Bsp1286I GDGCHC 1 cut(s) 360
Bsp13I TCCGGA 1 cut(s) 424
Bsp143I GATC 3 cut(s) 900, 976, 1020
Bsp19I CCATGG 1 cut(s) 182
BspACI CCGC 7 cut(s) 12, 65, 189, 224, 227, 664, 860
BspANI GGCC 4 cut(s) 192, 375, 563, 737
BspCNI CTCAG 3 cut(s) 226, 583, 1012
BspEI TCCGGA 1 cut(s) 424
BspLI GGNNCC 4 cut(s) 231, 376, 627, 682
BspPI GGATC 2 cut(s) 908, 984
BspT104I TTCGAA 1 cut(s) 132
BspT107I GGYRCC 1 cut(s) 229
BspTNI GGTCTC 2 cut(s) 300, 870
BsrBI CCGCTC 1 cut(s) 664
BsrDI GCAATG 1 cut(s) 606
BssECI CCNNGG 2 cut(s) 182, 377
BssMI GATC 3 cut(s) 900, 976, 1020
BssNI GRCGYC 2 cut(s) 41, 230
BssT1I CCWWGG 1 cut(s) 182
Bst2UI CCWGG 2 cut(s) 379, 565
Bst4CI ACNGT 3 cut(s) 22, 436, 1143
Bst6I CTCTTC 2 cut(s) 684, 816
BstACI GRCGYC 2 cut(s) 41, 230
BstBI TTCGAA 1 cut(s) 132
BstC8I GCNNGC 3 cut(s) 200, 240, 481
BstDEI CTNAG 5 cut(s) 213, 270, 534, 591, 999
BstDSI CCRYGG 1 cut(s) 182
BstF5I GGATG 8 cut(s) 226, 433, 523, 601, 646, 781, 817, 823
BstH2I RGCGCY 3 cut(s) 38, 152, 233
BstHHI GCGC 4 cut(s) 6, 37, 151, 232
BstKTI GATC 3 cut(s) 903, 979, 1023
BstMAI GTCTC 4 cut(s) 209, 300, 870, 1041
BstMBI GATC 3 cut(s) 900, 976, 1020
BstMWI GCNNNNNNNGC 5 cut(s) 12, 146, 195, 866, 1004
BstNI CCWGG 2 cut(s) 379, 565
BstSCI CCNGG 2 cut(s) 377, 563
BstSLI GKGCMC 1 cut(s) 360
BstV1I GCAGC 2 cut(s) 406, 488
BstV2I GAAGAC 1 cut(s) 953
BsuI GTATCC 1 cut(s) 1048
BsuRI GGCC 4 cut(s) 192, 375, 563, 737
BtgI CCRYGG 1 cut(s) 182
BtsCI GGATG 8 cut(s) 226, 433, 523, 601, 646, 781, 817, 823
BtsI GCAGTG 2 cut(s) 193, 1101
BtsIMutI CAGTG 3 cut(s) 193, 332, 1101
Cac8I GCNNGC 3 cut(s) 200, 240, 481
CaiI CAGNNNCTG 1 cut(s) 53
CfoI GCGC 4 cut(s) 6, 37, 151, 232
Cfr13I GGNCC 2 cut(s) 374, 680
CseI GACGC 1 cut(s) 191
Csp6I GTAC 3 cut(s) 367, 550, 1150
CviAII CATG 3 cut(s) 183, 350, 526
CviQI GTAC 3 cut(s) 367, 550, 1150
DdeI CTNAG 5 cut(s) 213, 270, 534, 591, 999
DinI GGCGCC 1 cut(s) 231
DpnI GATC 3 cut(s) 902, 978, 1022
DpnII GATC 3 cut(s) 900, 976, 1020
DraIII CACNNNGTG 1 cut(s) 24
EaeI YGGCCR 2 cut(s) 190, 735
Eam1104I CTCTTC 2 cut(s) 684, 816
EarI CTCTTC 2 cut(s) 684, 816
Eco130I CCWWGG 1 cut(s) 182
Eco147I AGGCCT 1 cut(s) 563
Eco31I GGTCTC 2 cut(s) 300, 870
Eco32I GATATC 1 cut(s) 531
Eco47I GGWCC 1 cut(s) 680
Eco47III AGCGCT 1 cut(s) 150
Eco57I CTGAAG 1 cut(s) 356
EcoO109I RGGNCCY 1 cut(s) 374
EcoRII CCWGG 2 cut(s) 377, 563
EcoRV GATATC 1 cut(s) 531
EcoT14I CCWWGG 1 cut(s) 182
EgeI GGCGCC 1 cut(s) 231
EheI GGCGCC 1 cut(s) 231
ErhI CCWWGG 1 cut(s) 182
Esp3I CGTCTC 1 cut(s) 209
FaeI CATG 3 cut(s) 186, 353, 529
FatI CATG 3 cut(s) 182, 349, 525
FblI GTMKAC 2 cut(s) 80, 168
Fnu4HI GCNGC 8 cut(s) 13, 190, 225, 228, 420, 477, 665, 861
FokI GGATG 8 cut(s) 233, 440, 530, 608, 633, 788, 824, 830
Fsp4HI GCNGC 8 cut(s) 13, 190, 225, 228, 420, 477, 665, 861
FspAI RTGCGCAY 1 cut(s) 5
FspBI CTAG 2 cut(s) 299, 1153
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 4 cut(s) 5, 36, 150, 231
GluI GCNGC 8 cut(s) 13, 190, 225, 228, 420, 477, 665, 861
GsuI CTGGAG 1 cut(s) 131
HaeII RGCGCY 3 cut(s) 38, 152, 233
HaeIII GGCC 4 cut(s) 192, 375, 563, 737
HapII CCGG 1 cut(s) 425
HgaI GACGC 1 cut(s) 191
HhaI GCGC 4 cut(s) 6, 37, 151, 232
Hin1I GRCGYC 2 cut(s) 41, 230
Hin1II CATG 3 cut(s) 186, 353, 529
Hin6I GCGC 4 cut(s) 4, 35, 149, 230
HinP1I GCGC 4 cut(s) 4, 35, 149, 230
HincII GTYRAC 3 cut(s) 81, 169, 798
HindII GTYRAC 3 cut(s) 81, 169, 798
HinfI GANTC 6 cut(s) 122, 134, 315, 443, 449, 521
HpaII CCGG 1 cut(s) 425
HphI GGTGA 3 cut(s) 286, 314, 1024
Hpy166II GTNNAC 3 cut(s) 81, 169, 798
Hpy188I TCNGA 4 cut(s) 330, 448, 592, 1002
Hpy188III TCNNGA 4 cut(s) 425, 875, 898, 1048
Hpy8I GTNNAC 3 cut(s) 81, 169, 798
Hpy99I CGWCG 3 cut(s) 79, 82, 85
HpyAV CCTTC 3 cut(s) 553, 1045, 1057
HpyCH4III ACNGT 3 cut(s) 22, 436, 1143
HpyCH4IV ACGT 3 cut(s) 41, 669, 758
HpyCH4V TGCA 4 cut(s) 198, 578, 599, 923
HpyF10VI GCNNNNNNNGC 5 cut(s) 12, 146, 195, 866, 1004
HpyF3I CTNAG 5 cut(s) 213, 270, 534, 591, 999
HpySE526I ACGT 3 cut(s) 41, 669, 758
Hsp92I GRCGYC 2 cut(s) 41, 230
Hsp92II CATG 3 cut(s) 186, 353, 529
HspAI GCGC 4 cut(s) 4, 35, 149, 230
KasI GGCGCC 1 cut(s) 229
Kpn2I TCCGGA 1 cut(s) 424
Kzo9I GATC 3 cut(s) 900, 976, 1020
LmnI GCTCC 5 cut(s) 112, 214, 427, 631, 935
Lsp1109I GCAGC 2 cut(s) 406, 488
LweI GCATC 5 cut(s) 211, 225, 586, 872, 1036
MaeI CTAG 2 cut(s) 299, 1153
MaeII ACGT 3 cut(s) 41, 669, 758
MaeIII GTNAC 5 cut(s) 302, 430, 653, 726, 1104
MalI GATC 3 cut(s) 902, 978, 1022
MbiI CCGCTC 1 cut(s) 664
MboI GATC 3 cut(s) 900, 976, 1020
MfeI CAATTG 1 cut(s) 801
MhlI GDGCHC 1 cut(s) 360
MlsI TGGCCA 1 cut(s) 737
MluCI AATT 7 cut(s) 127, 413, 695, 789, 801, 953, 1073
MluNI TGGCCA 1 cut(s) 737
Mly113I GGCGCC 1 cut(s) 230
MlyI GAGTC 4 cut(s) 116, 324, 443, 530
MmeI TCCRAC 3 cut(s) 198, 353, 495
Mox20I TGGCCA 1 cut(s) 737
MroI TCCGGA 1 cut(s) 424
MroXI GAANNNNTTC 1 cut(s) 341
MscI TGGCCA 1 cut(s) 737
MseI TTAA 4 cut(s) 761, 843, 992, 1076
Msp20I TGGCCA 1 cut(s) 737
MspI CCGG 1 cut(s) 425
MspR9I CCNGG 2 cut(s) 379, 565
MunI CAATTG 1 cut(s) 801
Mva1269I GAATGC 1 cut(s) 283
MvaI CCWGG 2 cut(s) 379, 565
MwoI GCNNNNNNNGC 5 cut(s) 12, 146, 195, 866, 1004
NarI GGCGCC 1 cut(s) 230
NcoI CCATGG 1 cut(s) 182
NdeII GATC 3 cut(s) 900, 976, 1020
NlaIII CATG 3 cut(s) 186, 353, 529
NlaIV GGNNCC 4 cut(s) 231, 376, 627, 682
NmeAIII GCCGAG 1 cut(s) 431
NmuCI GTSAC 1 cut(s) 302
NsbI TGCGCA 1 cut(s) 5
NspV TTCGAA 1 cut(s) 132
PceI AGGCCT 1 cut(s) 563
PcsI WCGNNNNNNNCGW 1 cut(s) 80
PctI GAATGC 1 cut(s) 283
PdmI GAANNNNTTC 1 cut(s) 341
PfeI GAWTC 2 cut(s) 134, 443
PflFI GACNNNGTC 1 cut(s) 158
PkrI GCNGC 8 cut(s) 14, 191, 226, 229, 421, 478, 666, 862
PleI GAGTC 4 cut(s) 116, 323, 443, 529
PluTI GGCGCC 1 cut(s) 233
PpsI GAGTC 4 cut(s) 116, 323, 443, 529
Psp6I CCWGG 2 cut(s) 377, 563
PspGI CCWGG 2 cut(s) 377, 563
PspN4I GGNNCC 4 cut(s) 231, 376, 627, 682
PspPI GGNCC 2 cut(s) 374, 680
PstNI CAGNNNCTG 1 cut(s) 53
PsyI GACNNNGTC 1 cut(s) 158
RsaI GTAC 3 cut(s) 368, 551, 1151
RsaNI GTAC 3 cut(s) 367, 550, 1150
SalI GTCGAC 2 cut(s) 79, 167
SaqAI TTAA 4 cut(s) 761, 843, 992, 1076
SatI GCNGC 8 cut(s) 13, 190, 225, 228, 420, 477, 665, 861
Sau3AI GATC 3 cut(s) 900, 976, 1020
Sau96I GGNCC 2 cut(s) 374, 680
SchI GAGTC 4 cut(s) 116, 324, 443, 530
ScrFI CCNGG 2 cut(s) 379, 565
SduI GDGCHC 1 cut(s) 360
SfaNI GCATC 5 cut(s) 211, 225, 586, 872, 1036
SfoI GGCGCC 1 cut(s) 231
SfuI TTCGAA 1 cut(s) 132
SgrDI CGTCGACG 1 cut(s) 79
SinI GGWCC 1 cut(s) 680
SmlI CTYRAG 1 cut(s) 1031
SmoI CTYRAG 1 cut(s) 1031
Sse9I AATT 7 cut(s) 127, 413, 695, 789, 801, 953, 1073
SseBI AGGCCT 1 cut(s) 563
SsiI CCGC 7 cut(s) 12, 65, 189, 224, 227, 664, 860
SspDI GGCGCC 1 cut(s) 229
SspMI CTAG 2 cut(s) 299, 1153
StuI AGGCCT 1 cut(s) 563
StyD4I CCNGG 2 cut(s) 377, 563
StyI CCWWGG 1 cut(s) 182
TaaI ACNGT 3 cut(s) 22, 436, 1143
TaiI ACGT 3 cut(s) 44, 672, 761
TaqI TCGA 6 cut(s) 80, 132, 168, 318, 874, 979
TasI AATT 7 cut(s) 127, 413, 695, 789, 801, 953, 1073
TatI WGTACW 3 cut(s) 366, 549, 1149
TauI GCSGC 6 cut(s) 15, 192, 227, 230, 667, 863
TfiI GAWTC 2 cut(s) 134, 443
Tru1I TTAA 4 cut(s) 761, 843, 992, 1076
Tru9I TTAA 4 cut(s) 761, 843, 992, 1076
TscAI CASTG 3 cut(s) 200, 339, 1101
TseFI GTSAC 1 cut(s) 302
TseI GCWGC 2 cut(s) 419, 476
Tsp45I GTSAC 1 cut(s) 302
TspDTI ATGAA 5 cut(s) 334, 700, 795, 834, 1112
TspGWI ACGGA 2 cut(s) 327, 998
TspRI CASTG 3 cut(s) 200, 339, 1101
Tth111I GACNNNGTC 1 cut(s) 158
VpaK11BI GGWCC 1 cut(s) 680
XapI RAATTY 2 cut(s) 413, 695
XmiI GTMKAC 2 cut(s) 80, 168
XmnI GAANNNNTTC 1 cut(s) 341
XspI CTAG 2 cut(s) 299, 1153
ZraI GACGTC 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.