Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0006094

Physical Location & Seq

Genomic Coordinates Forward (+)

48529307 .. 48530329

Gene Structure 1023 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00366610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGCGCGGGCTTAACGGTGTGGTTACGGGCGCGACGTCGGCAGCAGCTATATTGGGGGCGGCGGTGTCGTCGTCATCGTCGTCGTCGTCGTGGGTGGCGGACGGGACGGTGTTGGAGCTGGACGATTCCAACTTCGAATCGGCGATTTCAGCGCTGGACTTGGTCCTGGTTGACTTCCACGCCCCCGGTGCGGCCACCGCAAGCGTCTCTCTCCTCGGTTGGATGCGGCTGCGCGCTCGCAAATATGGAGTCGATGGATATCCTACATTGAAGCTCTTTATACATGGTGTCCCCCAAGAGTATAAAGGGCCGAGGAAAGCCGATTTGCTTGTTAGTTATCTCAAGAAATTTGCAGCTCCCGATGTTACTCTACTTGATTCAGACTCGCTATTGCTGATTTTGTTGGGAGCAGCAGGCACATTCTTCCCTATTTATGTTGGTTTTGGCTTAGATGAGTCCGTGATATCCGAGTTGGGATTGAAGTACAAAAGGAAGGCCTGGTTTTCTGTTGTAAAGGATTTCTCCGAGGATCTAATGATGTTGTATGATTTTGACAAGGTTCCTGCTTTGGTATCCCTTCATCCAAGTTATGATGAGCGCCACGATGAGGATGAAGAGAAGTCAAAGAACTTGATCAAGATTTTGAAATCTGCTGCATCCGCTAATCGAGACCTTGTATTTGGTTATGTCGGGATCAAACAATGGGAAGATTTTGCTGAAACATTCGGAGCGAACAAGAAGACAAAATTACCGAAAATGGTTGTCTGGGATCGAATGGAGGAGTACTTAACGGTGATCAATGGTTTGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005911 GO:0006457 GO:0006950 GO:0008150 GO:0009505 GO:0009506 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016860 GO:0016864 GO:0030054 GO:0030312 GO:0031090 GO:0033554 GO:0034976 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055044 GO:0071944 GO:0098588 GO:0098805 GO:0140096

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Thioredoxin Thioredoxin_6

Protein Analysis

270

Amino Acids

29.63

Weight (kDa)

5.47

Isoelectric Point (pI)

29.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35620
fragaria_vesca	FvH4_5g30970 FvH4_5g30970
malus_domestica	MD08G1220700.v1.1 MD09G1249700.v1.1 MD15G1411400.v1.1
prunus_persica	Prupe.1G557400_v2.0.a1
pyrus_communis	pycom08g19150 pycom15g36620
rosa_chinensis	RchiOBHm_Chr7g0226321 RchiOBHm_Chr7g0226361
rosa_laevigata	RLG00000001746 RLG00000001751
rosa_multiflora	Rmu_sc0001044.1_g000026 Rmu_sc0004322.1_g000024 Rmu_sc0004426.1_g000003 Rmu_sc0004426.1_g000004
rosa_roxburghii	Rroxscaffold_3G00233030 Rroxscaffold_5G00366610
rosa_rugosa	Rorug07G0236600
rosa_samantha	Rh7AG383600 Rh7BG370400 Rh7CG403200 Rh7DG382000
rosa_wichuraiana	Rw7G032130 Rw7G032150 Rw7G032210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	38
AccII	CGCG	3 cut(s)	6, 32, 234
AciI	CCGC	8 cut(s)	6, 59, 62, 98, 191, 198, 226, 660
AclWI	GGATC	3 cut(s)	537, 701, 777
AcoI	YGGCCR	1 cut(s)	192
AcsI	RAATTY	1 cut(s)	347
AcyI	GRCGYC	1 cut(s)	35
AfaI	GTAC	2 cut(s)	485, 785
AfeI	AGCGCT	1 cut(s)	153
AfiI	CCNNNNNNNGG	2 cut(s)	190, 607
AgsI	TTSAA	3 cut(s)	271, 481, 646
AjnI	CCWGG	2 cut(s)	165, 497
AluBI	AGCT	4 cut(s)	47, 118, 274, 356
AluI	AGCT	4 cut(s)	47, 118, 274, 356
Alw26I	GTCTC	2 cut(s)	211, 663
AlwI	GGATC	3 cut(s)	537, 701, 777
Aor51HI	AGCGCT	1 cut(s)	153
AoxI	GGCC	3 cut(s)	192, 308, 495
ApeKI	GCWGC	6 cut(s)	41, 44, 229, 353, 410, 653
ApoI	RAATTY	1 cut(s)	347
ArsI	GACNNNNNNTTYG	4 cut(s)	234, 266, 662, 694
AspLEI	GCGC	6 cut(s)	6, 32, 154, 234, 236, 600
AspS9I	GGNCC	2 cut(s)	163, 308
AsuC2I	CCSGG	1 cut(s)	186
AsuHPI	GGTGA	1 cut(s)	805
AsuII	TTCGAA	1 cut(s)	135
AvaII	GGWCC	1 cut(s)	163
BbsI	GAAGAC	1 cut(s)	746
BbvI	GCAGC	6 cut(s)	53, 56, 216, 365, 422, 640
BccI	CCATC	1 cut(s)	248
BciT130I	CCWGG	2 cut(s)	167, 499
BciVI	GTATCC	1 cut(s)	583
BclI	TGATCA	2 cut(s)	633, 795
BcnI	CCSGG	1 cut(s)	186
BcoDI	GTCTC	2 cut(s)	211, 663
BfoI	RGCGCY	2 cut(s)	155, 601
BfuI	GTATCC	1 cut(s)	583
BisI	GCNGC	9 cut(s)	42, 45, 60, 192, 227, 230, 354, 411, 654
BlsI	GCNGC	9 cut(s)	43, 46, 61, 193, 228, 231, 355, 412, 655
BmcAI	AGTACT	1 cut(s)	785
Bme1390I	CCNGG	3 cut(s)	167, 186, 499
Bme18I	GGWCC	1 cut(s)	163
BmgT120I	GGNCC	2 cut(s)	163, 308
BmiI	GGNNCC	1 cut(s)	561
BmrFI	CCNGG	3 cut(s)	167, 186, 499
BmsI	GCATC	2 cut(s)	213, 665
BpiI	GAAGAC	1 cut(s)	746
Bpu14I	TTCGAA	1 cut(s)	135
BpuEI	CTTGAG	1 cut(s)	326
BpuMI	CCSGG	1 cut(s)	186
BsaBI	GATNNNNATC	1 cut(s)	258
BsaHI	GRCGYC	1 cut(s)	35
BsaI	GGTCTC	1 cut(s)	663
BsaJI	CCNNGG	4 cut(s)	184, 214, 311, 525
Bsc4I	CCNNNNNNNGG	2 cut(s)	190, 607
Bse8I	GATNNNNATC	1 cut(s)	258
BseBI	CCWGG	2 cut(s)	167, 499
BseDI	CCNNGG	4 cut(s)	184, 214, 311, 525
BseGI	GGATG	4 cut(s)	228, 580, 616, 656
BseJI	GATNNNNATC	1 cut(s)	258
BseLI	CCNNNNNNNGG	2 cut(s)	190, 607
BsePI	GCGCGC	1 cut(s)	232
BseRI	GAGGAG	2 cut(s)	203, 794
BseXI	GCAGC	6 cut(s)	53, 56, 216, 365, 422, 640
Bsh1236I	CGCG	3 cut(s)	6, 32, 234
BshFI	GGCC	3 cut(s)	194, 310, 497
BsiSI	CCGG	1 cut(s)	186
BslFI	GGGAC	2 cut(s)	118, 275
BslI	CCNNNNNNNGG	2 cut(s)	190, 607
BsmAI	GTCTC	2 cut(s)	211, 663
BsmBI	CGTCTC	1 cut(s)	211
BsmFI	GGGAC	2 cut(s)	118, 275
BsnI	GGCC	3 cut(s)	194, 310, 497
Bso31I	GGTCTC	1 cut(s)	663
Bsp119I	TTCGAA	1 cut(s)	135
Bsp143I	GATC	5 cut(s)	529, 633, 693, 769, 795
BspACI	CCGC	8 cut(s)	6, 59, 62, 98, 191, 198, 226, 660
BspANI	GGCC	3 cut(s)	194, 310, 497
BspFNI	CGCG	3 cut(s)	6, 32, 234
BspLI	GGNNCC	1 cut(s)	561
BspPI	GGATC	3 cut(s)	537, 701, 777
BspT104I	TTCGAA	1 cut(s)	135
BspTNI	GGTCTC	1 cut(s)	663
BssECI	CCNNGG	4 cut(s)	184, 214, 311, 525
BssHII	GCGCGC	1 cut(s)	232
BssMI	GATC	5 cut(s)	529, 633, 693, 769, 795
BssNI	GRCGYC	1 cut(s)	35
Bst2UI	CCWGG	2 cut(s)	167, 499
Bst4CI	ACNGT	3 cut(s)	17, 109, 793
Bst6I	CTCTTC	1 cut(s)	609
BstACI	GRCGYC	1 cut(s)	35
BstBI	TTCGAA	1 cut(s)	135
BstC8I	GCNNGC	5 cut(s)	8, 202, 234, 238, 415
BstDEI	CTNAG	1 cut(s)	448
BstF5I	GGATG	4 cut(s)	228, 580, 616, 656
BstFNI	CGCG	3 cut(s)	6, 32, 234
BstH2I	RGCGCY	2 cut(s)	155, 601
BstHHI	GCGC	6 cut(s)	6, 32, 154, 234, 236, 600
BstKTI	GATC	5 cut(s)	532, 636, 696, 772, 798
BstMAI	GTCTC	2 cut(s)	211, 663
BstMBI	GATC	5 cut(s)	529, 633, 693, 769, 795
BstMWI	GCNNNNNNNGC	5 cut(s)	38, 149, 188, 197, 659
BstNI	CCWGG	2 cut(s)	167, 499
BstSCI	CCNGG	3 cut(s)	165, 184, 497
BstUI	CGCG	3 cut(s)	6, 32, 234
BstV1I	GCAGC	6 cut(s)	53, 56, 216, 365, 422, 640
BstV2I	GAAGAC	1 cut(s)	746
BstX2I	RGATCY	1 cut(s)	529
BstYI	RGATCY	1 cut(s)	529
BsuI	GTATCC	1 cut(s)	583
BsuRI	GGCC	3 cut(s)	194, 310, 497
BtsCI	GGATG	4 cut(s)	228, 580, 616, 656
Cac8I	GCNNGC	5 cut(s)	8, 202, 234, 238, 415
CfoI	GCGC	6 cut(s)	6, 32, 154, 234, 236, 600
Cfr13I	GGNCC	2 cut(s)	163, 308
CseI	GACGC	1 cut(s)	193
Csp6I	GTAC	2 cut(s)	484, 784
CviAII	CATG	1 cut(s)	284
CviQI	GTAC	2 cut(s)	484, 784
DdeI	CTNAG	1 cut(s)	448
DpnI	GATC	5 cut(s)	531, 635, 695, 771, 797
DpnII	GATC	5 cut(s)	529, 633, 693, 769, 795
EaeI	YGGCCR	1 cut(s)	192
Eam1104I	CTCTTC	1 cut(s)	609
EarI	CTCTTC	1 cut(s)	609
EciI	GGCGGA	1 cut(s)	113
Eco147I	AGGCCT	1 cut(s)	497
Eco31I	GGTCTC	1 cut(s)	663
Eco32I	GATATC	2 cut(s)	260, 465
Eco47I	GGWCC	1 cut(s)	163
Eco47III	AGCGCT	1 cut(s)	153
EcoRII	CCWGG	2 cut(s)	165, 497
EcoRV	GATATC	2 cut(s)	260, 465
Esp3I	CGTCTC	1 cut(s)	211
FaeI	CATG	1 cut(s)	287
FaiI	YATR	9 cut(s)	50, 246, 281, 285, 303, 435, 546, 591, 687
FaqI	GGGAC	2 cut(s)	118, 275
FatI	CATG	1 cut(s)	283
FbaI	TGATCA	2 cut(s)	633, 795
Fnu4HI	GCNGC	9 cut(s)	42, 45, 60, 192, 227, 230, 354, 411, 654
FokI	GGATG	4 cut(s)	235, 567, 623, 643
Fsp4HI	GCNGC	9 cut(s)	42, 45, 60, 192, 227, 230, 354, 411, 654
GlaI	GCGC	6 cut(s)	5, 31, 153, 233, 235, 599
GluI	GCNGC	9 cut(s)	42, 45, 60, 192, 227, 230, 354, 411, 654
HaeII	RGCGCY	2 cut(s)	155, 601
HaeIII	GGCC	3 cut(s)	194, 310, 497
HapII	CCGG	1 cut(s)	186
HgaI	GACGC	1 cut(s)	193
HhaI	GCGC	6 cut(s)	6, 32, 154, 234, 236, 600
Hin1I	GRCGYC	1 cut(s)	35
Hin1II	CATG	1 cut(s)	287
Hin6I	GCGC	6 cut(s)	4, 30, 152, 232, 234, 598
HinP1I	GCGC	6 cut(s)	4, 30, 152, 232, 234, 598
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HinfI	GANTC	6 cut(s)	125, 137, 249, 377, 383, 455
HpaII	CCGG	1 cut(s)	186
HphI	GGTGA	1 cut(s)	805
Hpy166II	GTNNAC	1 cut(s)	172
Hpy188I	TCNGA	4 cut(s)	382, 469, 526, 728
Hpy188III	TCNNGA	5 cut(s)	343, 359, 637, 668, 691
Hpy8I	GTNNAC	1 cut(s)	172
Hpy99I	CGWCG	7 cut(s)	37, 40, 73, 82, 85, 88, 91
HpyAV	CCTTC	2 cut(s)	487, 587
HpyCH4III	ACNGT	3 cut(s)	17, 109, 793
HpyCH4IV	ACGT	1 cut(s)	35
HpyCH4V	TGCA	2 cut(s)	353, 656
HpyF10VI	GCNNNNNNNGC	5 cut(s)	38, 149, 188, 197, 659
HpyF3I	CTNAG	1 cut(s)	448
HpySE526I	ACGT	1 cut(s)	35
Hsp92I	GRCGYC	1 cut(s)	35
Hsp92II	CATG	1 cut(s)	287
HspAI	GCGC	6 cut(s)	4, 30, 152, 232, 234, 598
Ksp22I	TGATCA	2 cut(s)	633, 795
Kzo9I	GATC	5 cut(s)	529, 633, 693, 769, 795
LmnI	GCTCC	4 cut(s)	115, 361, 407, 728
Lsp1109I	GCAGC	6 cut(s)	53, 56, 216, 365, 422, 640
LweI	GCATC	2 cut(s)	213, 665
MaeII	ACGT	1 cut(s)	35
MaeIII	GTNAC	2 cut(s)	22, 364
MalI	GATC	5 cut(s)	531, 635, 695, 771, 797
MboI	GATC	5 cut(s)	529, 633, 693, 769, 795
MboII	GAAGA	4 cut(s)	415, 626, 719, 751
MflI	RGATCY	1 cut(s)	529
MluCI	AATT	2 cut(s)	347, 746
MlyI	GAGTC	3 cut(s)	258, 377, 464
MmeI	TCCRAC	3 cut(s)	93, 153, 200
MnlI	CCTC	5 cut(s)	224, 306, 520, 601, 772
MseI	TTAA	2 cut(s)	12, 788
MspI	CCGG	1 cut(s)	186
MspR9I	CCNGG	3 cut(s)	167, 186, 499
MvaI	CCWGG	2 cut(s)	167, 499
MvnI	CGCG	3 cut(s)	6, 32, 234
MwoI	GCNNNNNNNGC	5 cut(s)	38, 149, 188, 197, 659
NciI	CCSGG	1 cut(s)	186
NdeII	GATC	5 cut(s)	529, 633, 693, 769, 795
NlaIII	CATG	1 cut(s)	287
NlaIV	GGNNCC	1 cut(s)	561
NmeAIII	GCCGAG	1 cut(s)	336
NspV	TTCGAA	1 cut(s)	135
PauI	GCGCGC	1 cut(s)	232
PceI	AGGCCT	1 cut(s)	497
PcsI	WCGNNNNNNNCGW	5 cut(s)	32, 74, 77, 83, 86
PfeI	GAWTC	3 cut(s)	125, 137, 377
PflFI	GACNNNGTC	1 cut(s)	161
PkrI	GCNGC	9 cut(s)	43, 46, 61, 193, 228, 231, 355, 412, 655
PleI	GAGTC	3 cut(s)	257, 377, 463
PpsI	GAGTC	3 cut(s)	257, 377, 463
Psp6I	CCWGG	2 cut(s)	165, 497
PspGI	CCWGG	2 cut(s)	165, 497
PspN4I	GGNNCC	1 cut(s)	561
PspPI	GGNCC	2 cut(s)	163, 308
PsuI	RGATCY	1 cut(s)	529
PsyI	GACNNNGTC	1 cut(s)	161
PteI	GCGCGC	1 cut(s)	232
RsaI	GTAC	2 cut(s)	485, 785
RsaNI	GTAC	2 cut(s)	484, 784
SaqAI	TTAA	2 cut(s)	12, 788
SatI	GCNGC	9 cut(s)	42, 45, 60, 192, 227, 230, 354, 411, 654
Sau3AI	GATC	5 cut(s)	529, 633, 693, 769, 795
Sau96I	GGNCC	2 cut(s)	163, 308
ScaI	AGTACT	1 cut(s)	785
SchI	GAGTC	3 cut(s)	258, 377, 464
ScrFI	CCNGG	3 cut(s)	167, 186, 499
SetI	ASST	7 cut(s)	38, 49, 120, 276, 358, 561, 675
SfaNI	GCATC	2 cut(s)	213, 665
SfuI	TTCGAA	1 cut(s)	135
SinI	GGWCC	1 cut(s)	163
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
Sse9I	AATT	2 cut(s)	347, 746
SseBI	AGGCCT	1 cut(s)	497
SsiI	CCGC	8 cut(s)	6, 59, 62, 98, 191, 198, 226, 660
StuI	AGGCCT	1 cut(s)	497
StyD4I	CCNGG	3 cut(s)	165, 184, 497
TaaI	ACNGT	3 cut(s)	17, 109, 793
TaiI	ACGT	1 cut(s)	38
TaqI	TCGA	4 cut(s)	135, 252, 667, 772
TasI	AATT	2 cut(s)	347, 746
TatI	WGTACW	2 cut(s)	483, 783
TauI	GCSGC	3 cut(s)	62, 194, 229
TfiI	GAWTC	3 cut(s)	125, 137, 377
Tru1I	TTAA	2 cut(s)	12, 788
Tru9I	TTAA	2 cut(s)	12, 788
TseI	GCWGC	6 cut(s)	41, 44, 229, 353, 410, 653
TspDTI	ATGAA	2 cut(s)	569, 627
TspGWI	ACGGA	1 cut(s)	448
Tth111I	GACNNNGTC	1 cut(s)	161
VpaK11BI	GGWCC	1 cut(s)	163
XapI	RAATTY	1 cut(s)	347
ZraI	GACGTC	1 cut(s)	36
ZrmI	AGTACT	1 cut(s)	785

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.