Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0006094

Physical Location & Seq

Genomic Coordinates Reverse (-)

51917683 .. 52038307

Gene Structure 120625 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG382000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

ATGCGCGTCTTAACGGTGTGGTTCTGGGCGCTGACGTCAGCAGCAGCAGCTATATTGGGGGCGTCATCGTCATCGTCATCGTCATCGTCATCGTCATCGTCGTGGGTGGCGGACGGGACGGTGCTGGAGCTGGACGATTCCAACTTCGAATCGGCGATTTCAGCGCTGGACTTGGTCTTGGTTGACTTCCACGCCCCCTGGTGCGGCCACTGCAAGCGTCTCTCTCCTCAGTTGGATGCGGCTGCGCCGGTGCTTGCTTCGTTGAAGAACCCAATAGTGATAGCAAAAGTTAATGCTGACAAGTACACATCTCTAGCTCGCAAATATGGAGTCGATGGATATCCTACGCTGAAGCTCTTTATACATGGTGTCCCCCAAGAGTATAAAGGGCCGAGGAAAGCCGATTTGCTTGTTAGTTATCTCAAGAAATTTGCAGCTCCCGATGTTACCCTACTTGATTCAGACTCTGCTGTTGCTGACTTTGTTGGAGCAGCAGGCACATTCTTCCCCATATATGTTGGTTTTGGCTTAGATGAGTCCCTGATATCTGCGTTGGGATTGAAGTACAAAAGGAAGGCCTGGTTTTCTGTTGCAAAGGATTTCTCGGAGGATCTAATGATGTTGTATGATTTTGACAAGGTTCCTGCCTTGGTATCCCTTCATCCAAGTTACGATGAGCGCCACGTCTTTTACGGCCCCTTTGAAGAGGAATTTTTGGAAGATTTCATAAAACAAAGTTTGTTACCTTTGGCCATACCCATCAACTATGACACATTAAAATCATTGGACGATGATGAAAGAAAAATTGTGTTGACAATTGTGGAGGATGAGGATGAAGAGAAGTCAAAGAACTTGATCAAGATTTTGAAATCTGCTGCATCCGCTAATCGAGACCTTGTATTTGGTTATGTTGGGATCAAACAATGGGAAGATTTTGCTGAAACATTCGGAGCGAACAAGAAGACAAAACTACCAAAAATGGTTGTTTGGGATCGAATGGAGGAGTACTTAACAGTCAACGGCTCAGAAAGCATTGACGGGGAAGATCAGGCATCTCAAGTCTCGCAGTTTCTTGAAGCATATAAGGAAGGAAGAACGATTAAAGAAAAAGTTGGTGGCAGTGTGTCGCTTACTGCCTTTATATCTTCATTTATTGGGATTGGAACTGTGTATATATTAGTTTTTGTGGTAGCGACGATAATTCTTATTAGAAAAGCCACTGAGGAAGAACCTCTCAGGGTTGGTAGGGGAGATAAGGTTGATCATGCTACAAGCTCTACTGCCGAGGCTGAAAGCAGTGAGCATAAAGCTGGAGAAAAGGAAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005911 GO:0006457 GO:0006950 GO:0008150 GO:0009505 GO:0009506 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016860 GO:0016864 GO:0030054 GO:0030312 GO:0031090 GO:0033554 GO:0034976 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055044 GO:0071944 GO:0098588 GO:0098805 GO:0140096

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Thioredoxin Thioredoxin_6

Protein Analysis

442

Amino Acids

48.62

Weight (kDa)

4.91

Isoelectric Point (pI)

34.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	41 - 143	1.5e-25	Thioredoxin
Thioredoxin_6	PF13848	201 - 358	2.2e-10	Thioredoxin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35620
fragaria_vesca	FvH4_5g30970 FvH4_5g30970
malus_domestica	MD08G1220700.v1.1 MD09G1249700.v1.1 MD15G1411400.v1.1
prunus_persica	Prupe.1G557400_v2.0.a1
pyrus_communis	pycom08g19150 pycom15g36620
rosa_chinensis	RchiOBHm_Chr7g0226321 RchiOBHm_Chr7g0226361
rosa_laevigata	RLG00000001746 RLG00000001751
rosa_multiflora	Rmu_sc0001044.1_g000026 Rmu_sc0004322.1_g000024 Rmu_sc0004426.1_g000003 Rmu_sc0004426.1_g000004
rosa_roxburghii	Rroxscaffold_3G00233030 Rroxscaffold_5G00366610
rosa_rugosa	Rorug07G0236600
rosa_samantha	Rh7AG383600 Rh7BG370400 Rh7CG403200 Rh7DG382000
rosa_wichuraiana	Rw7G032130 Rw7G032150 Rw7G032210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	38
AccII	CGCG	1 cut(s)	6
AciI	CCGC	4 cut(s)	110, 204, 239, 882
AclWI	GGATC	3 cut(s)	618, 923, 999
AcoI	YGGCCR	2 cut(s)	205, 750
AcsI	RAATTY	2 cut(s)	428, 710
AcuI	CTGAAG	1 cut(s)	371
AcyI	GRCGYC	2 cut(s)	35, 62
AfaI	GTAC	3 cut(s)	305, 566, 1007
AfeI	AGCGCT	1 cut(s)	165
AfiI	CCNNNNNNNGG	1 cut(s)	203
AgsI	TTSAA	5 cut(s)	265, 562, 704, 868, 1076
AjiI	CACGTC	1 cut(s)	685
AjnI	CCWGG	2 cut(s)	197, 578
AluBI	AGCT	7 cut(s)	50, 130, 317, 355, 437, 1275, 1310
AluI	AGCT	7 cut(s)	50, 130, 317, 355, 437, 1275, 1310
Alw26I	GTCTC	3 cut(s)	224, 885, 1066
AlwI	GGATC	3 cut(s)	618, 923, 999
AlwNI	CAGNNNCTG	1 cut(s)	467
Aor51HI	AGCGCT	1 cut(s)	165
AoxI	GGCC	5 cut(s)	205, 389, 576, 694, 750
ApeKI	GCWGC	7 cut(s)	41, 44, 47, 242, 434, 491, 875
ApoI	RAATTY	2 cut(s)	428, 710
ArsI	GACNNNNNNTTYG	4 cut(s)	315, 347, 884, 916
AspLEI	GCGC	5 cut(s)	6, 31, 166, 247, 681
AspS9I	GGNCC	2 cut(s)	389, 695
AsuII	TTCGAA	1 cut(s)	147
BalI	TGGCCA	1 cut(s)	752
BbsI	GAAGAC	1 cut(s)	968
BbvI	GCAGC	7 cut(s)	53, 56, 59, 229, 446, 503, 862
BccI	CCATC	2 cut(s)	329, 767
BceAI	ACGGC	2 cut(s)	709, 1036
BciT130I	CCWGG	2 cut(s)	199, 580
BciVI	GTATCC	1 cut(s)	664
BclI	TGATCA	2 cut(s)	855, 1261
BcoDI	GTCTC	3 cut(s)	224, 885, 1066
BfaI	CTAG	1 cut(s)	314
BfoI	RGCGCY	3 cut(s)	32, 167, 682
BfuI	GTATCC	1 cut(s)	664
BisI	GCNGC	9 cut(s)	42, 45, 48, 205, 240, 243, 435, 492, 876
BlsI	GCNGC	9 cut(s)	43, 46, 49, 206, 241, 244, 436, 493, 877
BmcAI	AGTACT	1 cut(s)	1007
Bme1390I	CCNGG	2 cut(s)	199, 580
BmgBI	CACGTC	1 cut(s)	685
BmgT120I	GGNCC	2 cut(s)	389, 695
BmiI	GGNNCC	2 cut(s)	642, 697
BmrFI	CCNGG	2 cut(s)	199, 580
BmsI	GCATC	3 cut(s)	226, 887, 1061
BpiI	GAAGAC	1 cut(s)	968
BpmI	CTGGAG	1 cut(s)	146
Bpu14I	TTCGAA	1 cut(s)	147
BpuEI	CTTGAG	2 cut(s)	407, 1041
BsaBI	GATNNNNATC	1 cut(s)	339
BsaHI	GRCGYC	2 cut(s)	35, 62
BsaI	GGTCTC	1 cut(s)	885
BsaJI	CCNNGG	4 cut(s)	197, 392, 648, 1284
BsaXI	ACNNNNNCTCC	2 cut(s)	1242, 1272
Bsc4I	CCNNNNNNNGG	1 cut(s)	203
Bse118I	RCCGGY	1 cut(s)	247
Bse8I	GATNNNNATC	1 cut(s)	339
BseBI	CCWGG	2 cut(s)	199, 580
BseDI	CCNNGG	4 cut(s)	197, 392, 648, 1284
BseGI	GGATG	5 cut(s)	241, 661, 832, 838, 878
BseJI	GATNNNNATC	1 cut(s)	339
BseLI	CCNNNNNNNGG	1 cut(s)	203
BseMII	CTCAG	4 cut(s)	242, 1038, 1212, 1249
BseRI	GAGGAG	2 cut(s)	216, 1016
BseXI	GCAGC	7 cut(s)	53, 56, 59, 229, 446, 503, 862
Bsh1236I	CGCG	1 cut(s)	6
BshFI	GGCC	5 cut(s)	207, 391, 578, 696, 752
BsiSI	CCGG	1 cut(s)	248
BslFI	GGGAC	3 cut(s)	130, 356, 523
BslI	CCNNNNNNNGG	1 cut(s)	203
BsmAI	GTCTC	3 cut(s)	224, 885, 1066
BsmBI	CGTCTC	1 cut(s)	224
BsmFI	GGGAC	3 cut(s)	130, 356, 523
BsnI	GGCC	5 cut(s)	207, 391, 578, 696, 752
Bso31I	GGTCTC	1 cut(s)	885
Bsp119I	TTCGAA	1 cut(s)	147
Bsp143I	GATC	6 cut(s)	610, 855, 915, 991, 1045, 1261
BspACI	CCGC	4 cut(s)	110, 204, 239, 882
BspANI	GGCC	5 cut(s)	207, 391, 578, 696, 752
BspCNI	CTCAG	4 cut(s)	241, 1037, 1213, 1248
BspFNI	CGCG	1 cut(s)	6
BspLI	GGNNCC	2 cut(s)	642, 697
BspPI	GGATC	3 cut(s)	618, 923, 999
BspT104I	TTCGAA	1 cut(s)	147
BspTNI	GGTCTC	1 cut(s)	885
BsrFI	RCCGGY	1 cut(s)	247
BssAI	RCCGGY	1 cut(s)	247
BssECI	CCNNGG	4 cut(s)	197, 392, 648, 1284
BssMI	GATC	6 cut(s)	610, 855, 915, 991, 1045, 1261
BssNI	GRCGYC	2 cut(s)	35, 62
BssT1I	CCWWGG	1 cut(s)	648
Bst2UI	CCWGG	2 cut(s)	199, 580
Bst4CI	ACNGT	4 cut(s)	16, 121, 1015, 1168
Bst6I	CTCTTC	2 cut(s)	699, 831
BstACI	GRCGYC	2 cut(s)	35, 62
BstBI	TTCGAA	1 cut(s)	147
BstC8I	GCNNGC	4 cut(s)	215, 255, 319, 496
BstDEI	CTNAG	5 cut(s)	228, 529, 1024, 1221, 1235
BstF5I	GGATG	5 cut(s)	241, 661, 832, 838, 878
BstFNI	CGCG	1 cut(s)	6
BstH2I	RGCGCY	3 cut(s)	32, 167, 682
BstHHI	GCGC	5 cut(s)	6, 31, 166, 247, 681
BstKTI	GATC	6 cut(s)	613, 858, 918, 994, 1048, 1264
BstMAI	GTCTC	3 cut(s)	224, 885, 1066
BstMBI	GATC	6 cut(s)	610, 855, 915, 991, 1045, 1261
BstMWI	GCNNNNNNNGC	5 cut(s)	47, 161, 210, 881, 1029
BstNI	CCWGG	2 cut(s)	199, 580
BstSCI	CCNGG	2 cut(s)	197, 578
BstUI	CGCG	1 cut(s)	6
BstV1I	GCAGC	7 cut(s)	53, 56, 59, 229, 446, 503, 862
BstV2I	GAAGAC	1 cut(s)	968
BstX2I	RGATCY	1 cut(s)	610
BstYI	RGATCY	1 cut(s)	610
BsuI	GTATCC	1 cut(s)	664
BsuRI	GGCC	5 cut(s)	207, 391, 578, 696, 752
BtrI	CACGTC	1 cut(s)	685
BtsCI	GGATG	5 cut(s)	241, 661, 832, 838, 878
BtsI	GCAGTG	3 cut(s)	208, 1126, 1303
BtsIMutI	CAGTG	4 cut(s)	208, 1126, 1218, 1303
Cac8I	GCNNGC	4 cut(s)	215, 255, 319, 496
CaiI	CAGNNNCTG	1 cut(s)	467
CfoI	GCGC	5 cut(s)	6, 31, 166, 247, 681
Cfr10I	RCCGGY	1 cut(s)	247
Cfr13I	GGNCC	2 cut(s)	389, 695
CseI	GACGC	2 cut(s)	51, 206
Csp6I	GTAC	3 cut(s)	304, 565, 1006
CviAII	CATG	2 cut(s)	365, 1265
CviQI	GTAC	3 cut(s)	304, 565, 1006
DdeI	CTNAG	5 cut(s)	228, 529, 1024, 1221, 1235
DpnI	GATC	6 cut(s)	612, 857, 917, 993, 1047, 1263
DpnII	GATC	6 cut(s)	610, 855, 915, 991, 1045, 1261
EaeI	YGGCCR	2 cut(s)	205, 750
Eam1104I	CTCTTC	2 cut(s)	699, 831
EarI	CTCTTC	2 cut(s)	699, 831
EciI	GGCGGA	1 cut(s)	125
Eco130I	CCWWGG	1 cut(s)	648
Eco147I	AGGCCT	1 cut(s)	578
Eco31I	GGTCTC	1 cut(s)	885
Eco32I	GATATC	2 cut(s)	341, 546
Eco47III	AGCGCT	1 cut(s)	165
Eco57I	CTGAAG	1 cut(s)	371
EcoRII	CCWGG	2 cut(s)	197, 578
EcoRV	GATATC	2 cut(s)	341, 546
EcoT14I	CCWWGG	1 cut(s)	648
ErhI	CCWWGG	1 cut(s)	648
Esp3I	CGTCTC	1 cut(s)	224
FaeI	CATG	2 cut(s)	368, 1268
FaqI	GGGAC	3 cut(s)	130, 356, 523
FatI	CATG	2 cut(s)	364, 1264
FbaI	TGATCA	2 cut(s)	855, 1261
Fnu4HI	GCNGC	9 cut(s)	42, 45, 48, 205, 240, 243, 435, 492, 876
FokI	GGATG	5 cut(s)	248, 648, 839, 845, 865
Fsp4HI	GCNGC	9 cut(s)	42, 45, 48, 205, 240, 243, 435, 492, 876
FspBI	CTAG	1 cut(s)	314
GlaI	GCGC	5 cut(s)	5, 30, 165, 246, 680
GluI	GCNGC	9 cut(s)	42, 45, 48, 205, 240, 243, 435, 492, 876
GsuI	CTGGAG	1 cut(s)	146
HaeII	RGCGCY	3 cut(s)	32, 167, 682
HaeIII	GGCC	5 cut(s)	207, 391, 578, 696, 752
HapII	CCGG	1 cut(s)	248
HgaI	GACGC	2 cut(s)	51, 206
HhaI	GCGC	5 cut(s)	6, 31, 166, 247, 681
Hin1I	GRCGYC	2 cut(s)	35, 62
Hin1II	CATG	2 cut(s)	368, 1268
Hin6I	GCGC	5 cut(s)	4, 29, 164, 245, 679
HinP1I	GCGC	5 cut(s)	4, 29, 164, 245, 679
HincII	GTYRAC	3 cut(s)	184, 813, 1018
HindII	GTYRAC	3 cut(s)	184, 813, 1018
HinfI	GANTC	6 cut(s)	137, 149, 330, 458, 464, 536
HpaII	CCGG	1 cut(s)	248
Hpy166II	GTNNAC	4 cut(s)	184, 306, 813, 1018
Hpy188I	TCNGA	4 cut(s)	463, 607, 950, 1027
Hpy188III	TCNNGA	5 cut(s)	424, 440, 859, 890, 1073
Hpy8I	GTNNAC	4 cut(s)	184, 306, 813, 1018
Hpy99I	CGWCG	2 cut(s)	103, 1198
HpyAV	CCTTC	3 cut(s)	568, 668, 1082
HpyCH4III	ACNGT	4 cut(s)	16, 121, 1015, 1168
HpyCH4IV	ACGT	2 cut(s)	35, 684
HpyCH4V	TGCA	4 cut(s)	213, 434, 593, 878
HpyF10VI	GCNNNNNNNGC	5 cut(s)	47, 161, 210, 881, 1029
HpyF3I	CTNAG	5 cut(s)	228, 529, 1024, 1221, 1235
HpySE526I	ACGT	2 cut(s)	35, 684
Hsp92I	GRCGYC	2 cut(s)	35, 62
Hsp92II	CATG	2 cut(s)	368, 1268
HspAI	GCGC	5 cut(s)	4, 29, 164, 245, 679
Ksp22I	TGATCA	2 cut(s)	855, 1261
Kzo9I	GATC	6 cut(s)	610, 855, 915, 991, 1045, 1261
LmnI	GCTCC	4 cut(s)	127, 442, 488, 950
Lsp1109I	GCAGC	7 cut(s)	53, 56, 59, 229, 446, 503, 862
LweI	GCATC	3 cut(s)	226, 887, 1061
MaeI	CTAG	1 cut(s)	314
MaeII	ACGT	2 cut(s)	35, 684
MaeIII	GTNAC	3 cut(s)	445, 668, 741
MalI	GATC	6 cut(s)	612, 857, 917, 993, 1047, 1263
MboI	GATC	6 cut(s)	610, 855, 915, 991, 1045, 1261
MfeI	CAATTG	1 cut(s)	816
MflI	RGATCY	1 cut(s)	610
MlsI	TGGCCA	1 cut(s)	752
MluCI	AATT	5 cut(s)	428, 710, 804, 816, 1200
MluNI	TGGCCA	1 cut(s)	752
MlyI	GAGTC	3 cut(s)	339, 458, 545
MmeI	TCCRAC	3 cut(s)	165, 213, 466
Mox20I	TGGCCA	1 cut(s)	752
MscI	TGGCCA	1 cut(s)	752
MseI	TTAA	5 cut(s)	11, 291, 776, 1010, 1101
MslI	CAYNNNNRTG	1 cut(s)	100
Msp20I	TGGCCA	1 cut(s)	752
MspI	CCGG	1 cut(s)	248
MspR9I	CCNGG	2 cut(s)	199, 580
MunI	CAATTG	1 cut(s)	816
MvaI	CCWGG	2 cut(s)	199, 580
MvnI	CGCG	1 cut(s)	6
MwoI	GCNNNNNNNGC	5 cut(s)	47, 161, 210, 881, 1029
NdeII	GATC	6 cut(s)	610, 855, 915, 991, 1045, 1261
NlaIII	CATG	2 cut(s)	368, 1268
NlaIV	GGNNCC	2 cut(s)	642, 697
NmeAIII	GCCGAG	2 cut(s)	417, 1309
NspV	TTCGAA	1 cut(s)	147
PceI	AGGCCT	1 cut(s)	578
PcsI	WCGNNNNNNNCGW	1 cut(s)	98
PfeI	GAWTC	3 cut(s)	137, 149, 458
PflFI	GACNNNGTC	1 cut(s)	173
PkrI	GCNGC	9 cut(s)	43, 46, 49, 206, 241, 244, 436, 493, 877
PleI	GAGTC	3 cut(s)	338, 458, 544
PpsI	GAGTC	3 cut(s)	338, 458, 544
Psp6I	CCWGG	2 cut(s)	197, 578
PspGI	CCWGG	2 cut(s)	197, 578
PspN4I	GGNNCC	2 cut(s)	642, 697
PspPI	GGNCC	2 cut(s)	389, 695
PstNI	CAGNNNCTG	1 cut(s)	467
PsuI	RGATCY	1 cut(s)	610
PsyI	GACNNNGTC	1 cut(s)	173
RsaI	GTAC	3 cut(s)	305, 566, 1007
RsaNI	GTAC	3 cut(s)	304, 565, 1006
RseI	CAYNNNNRTG	1 cut(s)	100
SaqAI	TTAA	5 cut(s)	11, 291, 776, 1010, 1101
SatI	GCNGC	9 cut(s)	42, 45, 48, 205, 240, 243, 435, 492, 876
Sau3AI	GATC	6 cut(s)	610, 855, 915, 991, 1045, 1261
Sau96I	GGNCC	2 cut(s)	389, 695
ScaI	AGTACT	1 cut(s)	1007
SchI	GAGTC	3 cut(s)	339, 458, 545
ScrFI	CCNGG	2 cut(s)	199, 580
SfaNI	GCATC	3 cut(s)	226, 887, 1061
SfuI	TTCGAA	1 cut(s)	147
SgrAI	CRCCGGYG	1 cut(s)	247
SmiMI	CAYNNNNRTG	1 cut(s)	100
SmlI	CTYRAG	2 cut(s)	422, 1056
SmoI	CTYRAG	2 cut(s)	422, 1056
Sse9I	AATT	5 cut(s)	428, 710, 804, 816, 1200
SseBI	AGGCCT	1 cut(s)	578
SsiI	CCGC	4 cut(s)	110, 204, 239, 882
SspMI	CTAG	1 cut(s)	314
StuI	AGGCCT	1 cut(s)	578
StyD4I	CCNGG	2 cut(s)	197, 578
StyI	CCWWGG	1 cut(s)	648
TaaI	ACNGT	4 cut(s)	16, 121, 1015, 1168
TaiI	ACGT	2 cut(s)	38, 687
TaqI	TCGA	4 cut(s)	147, 333, 889, 994
TasI	AATT	5 cut(s)	428, 710, 804, 816, 1200
TatI	WGTACW	3 cut(s)	303, 564, 1005
TauI	GCSGC	2 cut(s)	207, 242
TfiI	GAWTC	3 cut(s)	137, 149, 458
Tru1I	TTAA	5 cut(s)	11, 291, 776, 1010, 1101
Tru9I	TTAA	5 cut(s)	11, 291, 776, 1010, 1101
TscAI	CASTG	4 cut(s)	215, 1126, 1225, 1303
TseI	GCWGC	7 cut(s)	41, 44, 47, 242, 434, 491, 875
TspDTI	ATGAA	5 cut(s)	650, 715, 810, 849, 1137
TspRI	CASTG	4 cut(s)	215, 1126, 1225, 1303
Tth111I	GACNNNGTC	1 cut(s)	173
XapI	RAATTY	2 cut(s)	428, 710
XspI	CTAG	1 cut(s)	314
ZraI	GACGTC	1 cut(s)	36
ZrmI	AGTACT	1 cut(s)	1007

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.